Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

79776573 .. 79779116

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021990

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTGGGTTGATGCTTGGGAAAAGTGTTGGAGGTGGAGAAGTCACTTCCCCATTGAAAAAAGGAAGATTGGGATCTGGTGTTGATCAAGGGCTTAAAGACTCACCTGGAGCTTCTATGGGTGGTGTGCAATCGACTCCTATTAGCCCGGATTCCTTGGGTCATTGGAAGCGCAGGGTGAATGCTTCCACTTTCAGTTTTGGGATGGAGGCTTCCCCTACCAAAGGCCTGCAGTTTGAGGTGGGGAAGTCTTCATCCCCTACTAATGGTAAGCGTTTTATTGTTCCTGTACTCGTCCTGAGCTTCATCTTGCTATCTCTGGCCATTGAAGCCCGGCCGATGCATGAGCATGGCTCGAAGATTCATCATCATCGTCATCAGTTTCACCACCACAAGGAGGTAGTGCACAACCACAAGTACAATGGTCACAGGAAGGCTGTACCAAGCCCAGGAGGGGCACTTGGTCAAGGCTTTATTGATCTTCTGAACCTTTGGGGAGTCAAGAACAGTGGTCCGAGTCCTGGTGCAGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

18.88

Weight (kDa)

10.24

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	321, 335
AfaI	GTAC	3 cut(s)	291, 419, 441
AfiI	CCNNNNNNNGG	8 cut(s)	224, 266, 394, 397, 449, 454, 521, 527
AgsI	TTSAA	2 cut(s)	58, 329
AjnI	CCWGG	3 cut(s)	106, 448, 520
AluBI	AGCT	2 cut(s)	113, 303
AluI	AGCT	2 cut(s)	113, 303
Alw21I	GWGCWC	1 cut(s)	408
Alw44I	GTGCAC	1 cut(s)	404
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	4 cut(s)	226, 321, 335, 529
ApaLI	GTGCAC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	512
AsuC2I	CCSGG	2 cut(s)	149, 334
AsuHPI	GGTGA	3 cut(s)	96, 190, 377
AvaII	GGWCC	1 cut(s)	512
BaeGI	GKGCMC	2 cut(s)	408, 460
BalI	TGGCCA	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	408
BccI	CCATC	1 cut(s)	199
BciT130I	CCWGG	3 cut(s)	108, 450, 522
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	149, 334
BfmI	CTRYAG	1 cut(s)	230
Bme1390I	CCNGG	5 cut(s)	108, 149, 334, 450, 522
Bme18I	GGWCC	1 cut(s)	512
BmgT120I	GGNCC	1 cut(s)	512
BmrFI	CCNGG	5 cut(s)	108, 149, 334, 450, 522
BmsI	GCATC	2 cut(s)	3, 330
BpiI	GAAGAC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	129
Bpu10I	CCTNAGC	1 cut(s)	299
BpuMI	CCSGG	2 cut(s)	149, 334
BsaBI	GATNNNNATC	1 cut(s)	73
BsaJI	CCNNGG	2 cut(s)	156, 448
Bsc4I	CCNNNNNNNGG	8 cut(s)	224, 266, 394, 397, 449, 454, 521, 527
Bse8I	GATNNNNATC	1 cut(s)	73
BseBI	CCWGG	3 cut(s)	108, 450, 522
BseDI	CCNNGG	2 cut(s)	156, 448
BseGI	GGATG	2 cut(s)	210, 254
BseJI	GATNNNNATC	1 cut(s)	73
BseLI	CCNNNNNNNGG	8 cut(s)	224, 266, 394, 397, 449, 454, 521, 527
BseMII	CTCAG	1 cut(s)	290
BseSI	GKGCMC	2 cut(s)	408, 460
BseX3I	CGGCCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	4 cut(s)	228, 323, 337, 531
BsiEI	CGRYCG	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	149, 334
BslI	CCNNNNNNNGG	8 cut(s)	224, 266, 394, 397, 449, 454, 521, 527
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	228, 323, 337, 531
Bsp1286I	GDGCHC	2 cut(s)	408, 460
Bsp143I	GATC	3 cut(s)	74, 85, 478
BspANI	GGCC	4 cut(s)	228, 323, 337, 531
BspCNI	CTCAG	1 cut(s)	291
BspMAI	CTGCAG	1 cut(s)	234
BspPI	GGATC	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	156, 448
BssMI	GATC	3 cut(s)	74, 85, 478
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	3 cut(s)	108, 450, 522
Bst4CI	ACNGT	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	230, 529
BstDEI	CTNAG	1 cut(s)	299
BstENI	CCTNNNNNAGG	2 cut(s)	222, 525
BstF5I	GGATG	2 cut(s)	210, 254
BstHHI	GCGC	1 cut(s)	174
BstKTI	GATC	3 cut(s)	77, 88, 481
BstMBI	GATC	3 cut(s)	74, 85, 478
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	1 cut(s)	329
BstNI	CCWGG	3 cut(s)	108, 450, 522
BstSCI	CCNGG	5 cut(s)	106, 147, 332, 448, 520
BstSFI	CTRYAG	1 cut(s)	230
BstSLI	GKGCMC	2 cut(s)	408, 460
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
BstZI	CGGCCG	1 cut(s)	335
BsuRI	GGCC	4 cut(s)	228, 323, 337, 531
BtsCI	GGATG	2 cut(s)	210, 254
BtsIMutI	CAGTG	1 cut(s)	514
Cac8I	GCNNGC	2 cut(s)	230, 529
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	290, 418, 440
CspCI	CAANNNNNGTGG	2 cut(s)	490, 525
CviAII	CATG	2 cut(s)	344, 350
CviQI	GTAC	3 cut(s)	290, 418, 440
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	76, 87, 480
DpnII	GATC	3 cut(s)	74, 85, 478
EaeI	YGGCCR	2 cut(s)	321, 335
EagI	CGGCCG	1 cut(s)	335
EclXI	CGGCCG	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	512
Eco52I	CGGCCG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	2 cut(s)	222, 525
EcoRII	CCWGG	3 cut(s)	106, 448, 520
EcoT14I	CCWWGG	1 cut(s)	156
EcoT22I	ATGCAT	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	347, 353
FaiI	YATR	3 cut(s)	119, 345, 351
FatI	CATG	2 cut(s)	343, 349
FbaI	TGATCA	1 cut(s)	85
FokI	GGATG	2 cut(s)	217, 241
GlaI	GCGC	1 cut(s)	173
GsuI	CTGGAG	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	228, 323, 337, 531
HapII	CCGG	2 cut(s)	149, 334
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	2 cut(s)	347, 353
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HinfI	GANTC	6 cut(s)	101, 136, 152, 361, 498, 517
HpaII	CCGG	2 cut(s)	149, 334
HphI	GGTGA	3 cut(s)	96, 190, 377
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	486, 516
Hpy188III	TCNNGA	2 cut(s)	298, 502
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4V	TGCA	5 cut(s)	130, 232, 343, 406, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	329
HpyF3I	CTNAG	1 cut(s)	299
Hsp92II	CATG	2 cut(s)	347, 353
HspAI	GCGC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	74, 85, 478
LmnI	GCTCC	1 cut(s)	110
LweI	GCATC	2 cut(s)	3, 330
MaeIII	GTNAC	2 cut(s)	43, 425
MalI	GATC	3 cut(s)	76, 87, 480
MboI	GATC	3 cut(s)	74, 85, 478
MboII	GAAGA	4 cut(s)	78, 243, 370, 473
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	2 cut(s)	408, 460
MlsI	TGGCCA	1 cut(s)	323
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	4 cut(s)	95, 130, 507, 526
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	26, 202, 232, 391, 446
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	345
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	96
MslI	CAYNNNNRTG	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	323
MspI	CCGG	2 cut(s)	149, 334
MspR9I	CCNGG	5 cut(s)	108, 149, 334, 450, 522
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	3 cut(s)	108, 450, 522
MwoI	GCNNNNNNNGC	1 cut(s)	329
NciI	CCSGG	2 cut(s)	149, 334
NdeII	GATC	3 cut(s)	74, 85, 478
NlaIII	CATG	2 cut(s)	347, 353
NmuCI	GTSAC	2 cut(s)	43, 425
NsiI	ATGCAT	1 cut(s)	345
PceI	AGGCCT	1 cut(s)	228
PctI	GAATGC	1 cut(s)	187
PfeI	GAWTC	2 cut(s)	152, 361
PleI	GAGTC	4 cut(s)	95, 130, 506, 525
PpsI	GAGTC	4 cut(s)	95, 130, 506, 525
Psp6I	CCWGG	3 cut(s)	106, 448, 520
PspGI	CCWGG	3 cut(s)	106, 448, 520
PspPI	GGNCC	1 cut(s)	512
PstI	CTGCAG	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	74
RsaI	GTAC	3 cut(s)	291, 419, 441
RsaNI	GTAC	3 cut(s)	290, 418, 440
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	3 cut(s)	74, 85, 478
Sau96I	GGNCC	1 cut(s)	512
SchI	GAGTC	4 cut(s)	95, 130, 507, 526
ScrFI	CCNGG	5 cut(s)	108, 149, 334, 450, 522
SduI	GDGCHC	2 cut(s)	408, 460
SetI	ASST	7 cut(s)	37, 109, 115, 243, 305, 402, 492
SfaNI	GCATC	2 cut(s)	3, 330
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	512
SmiMI	CAYNNNNRTG	1 cut(s)	348
SseBI	AGGCCT	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	5 cut(s)	106, 147, 332, 448, 520
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	1 cut(s)	509
TaqI	TCGA	2 cut(s)	134, 356
TatI	WGTACW	2 cut(s)	289, 417
TfiI	GAWTC	2 cut(s)	152, 361
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	2 cut(s)	43, 425
Tsp45I	GTSAC	2 cut(s)	43, 425
TspDTI	ATGAA	3 cut(s)	243, 295, 353
TspRI	CASTG	1 cut(s)	514
VneI	GTGCAC	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	512
XagI	CCTNNNNNAGG	2 cut(s)	222, 525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.