Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

49246603 .. 49247553

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG377900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGATGTGCCTCTGAACCGGTTGCCGATCTGGGTCCAAATCCGAGGGATGCCGTCGGCCTATTCCACACCGAATTGGGCTCGAAAGGTTGATGGGTGCTTGGGTCGGGTTGTCCATGTGGATGAAAGGAGATTGAAGTGTCACAAGGAGGTCAAGGTGTTGGTGGTGGTGAATCTCGATCGCCTCCTTCCAAGGCATTTCAGGTACTCTTTTTCTAATTCTTGTGCGAAAGAGGTTGATCTTGAATATTTGAATGTCAGGGGTTTATGTTTAGTGTGTGGTTTCTTCGAGCATGGGGTGGGGGGTTGTGGTGGTCCTCCGACGGAGGTGTGGGGTACGAGTGTGACTGCAGCCTCATCTGGGGATGGACAGCAGAGTGTGGTTTTGCAAGGCGATTCATCGATGGTGATGGAGGCTGTTACTCATCCCAGTAGGGTGAGAGTGCCACCGGGTTTTGCAGCTTTACCAGAACCCAGGGGGGTGGGTGACCTTTCTGGGGTTGGTCCATTATTGTTGGAAGGAAAGGTGGACTCTCTGCCTATGGTGTTGGAAGAGAGTGTTAATGAGGTGCAAACCATGGTTGGGTCGATGCTTGGGAAAAAGGGCGATGGTGGTGAAATCACTTCCCCATTGAAGAAAAGGAGATTGGGATTTGGATCTGGTATTGATCAAGGGCCTAATGACTCAGCTAGAGCTTCTGTGGGAGGTGTGCAACCGGCTCCTCATAGCCTGGATTCTTTGGGTCATCGGAAGCGCAGGGTGTCTGCTTCCACTTTCAGTTTTGGGGTGGAGGGCTCCCCTACCAAAGGCTTGCAATTTGAGGTGGGGAAGTCTGCATCCCCTACTACTGGTAAGGTAGGGGATGGGAAGAAACACAAACCAAAGATTCTTTCAGCTGCAAAGCGTCGTGCACTGCTCTCTAGGCTTGAGGAGGAGGCCTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

316

Amino Acids

33.64

Weight (kDa)

9.33

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	664
AfaI	GTAC	2 cut(s)	206, 337
AfiI	CCNNNNNNNGG	5 cut(s)	360, 496, 582, 806, 848
AgeI	ACCGGT	1 cut(s)	18
AgsI	TTSAA	4 cut(s)	136, 245, 253, 634
AjnI	CCWGG	2 cut(s)	473, 729
AjuI	GAANNNNNNNTTGG	4 cut(s)	629, 661, 874, 906
AluBI	AGCT	4 cut(s)	461, 689, 695, 896
AluI	AGCT	4 cut(s)	461, 689, 695, 896
Alw21I	GWGCWC	1 cut(s)	913
Alw44I	GTGCAC	1 cut(s)	909
AlwI	GGATC	1 cut(s)	664
AoxI	GGCC	3 cut(s)	57, 674, 936
ApaLI	GTGCAC	1 cut(s)	909
ApeKI	GCWGC	3 cut(s)	350, 458, 896
AsiGI	ACCGGT	1 cut(s)	18
AspLEI	GCGC	1 cut(s)	756
AspS9I	GGNCC	4 cut(s)	34, 314, 503, 674
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	5 cut(s)	181, 418, 448, 497, 626
AvaII	GGWCC	3 cut(s)	34, 314, 503
BaeGI	GKGCMC	1 cut(s)	913
BaeI	ACNNNNGTAYC	2 cut(s)	327, 360
BanII	GRGCYC	2 cut(s)	82, 797
Bbv12I	GWGCWC	1 cut(s)	913
BbvI	GCAGC	3 cut(s)	362, 470, 883
BccI	CCATC	6 cut(s)	86, 359, 397, 403, 602, 857
BceAI	ACGGC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	475, 731
BclI	TGATCA	1 cut(s)	667
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	2 cut(s)	690, 921
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	3 cut(s)	351, 459, 897
BlsI	GCNGC	3 cut(s)	352, 460, 898
Bme1390I	CCNGG	3 cut(s)	450, 475, 731
Bme18I	GGWCC	3 cut(s)	34, 314, 503
BmgT120I	GGNCC	4 cut(s)	34, 314, 503, 674
BmiI	GGNNCC	3 cut(s)	35, 720, 796
BmrFI	CCNGG	3 cut(s)	450, 475, 731
BmrI	ACTGGG	1 cut(s)	423
BmsI	GCATC	3 cut(s)	39, 579, 845
BmuI	ACTGGG	1 cut(s)	423
BplI	GAGNNNNNCTC	1 cut(s)	923
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	450
Bsa29I	ATCGAT	1 cut(s)	401
BsaBI	GATNNNNATC	1 cut(s)	655
BsaJI	CCNNGG	5 cut(s)	43, 191, 473, 474, 576
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	5 cut(s)	360, 496, 582, 806, 848
Bse118I	RCCGGY	2 cut(s)	18, 715
Bse1I	ACTGG	2 cut(s)	429, 853
Bse8I	GATNNNNATC	1 cut(s)	655
BseBI	CCWGG	2 cut(s)	475, 731
BseCI	ATCGAT	1 cut(s)	401
BseDI	CCNNGG	5 cut(s)	43, 191, 473, 474, 576
BseGI	GGATG	7 cut(s)	10, 54, 127, 370, 424, 836, 868
BseJI	GATNNNNATC	1 cut(s)	655
BseLI	CCNNNNNNNGG	5 cut(s)	360, 496, 582, 806, 848
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	429, 853
BseRI	GAGGAG	3 cut(s)	711, 944, 947
BseSI	GKGCMC	1 cut(s)	913
BseXI	GCAGC	3 cut(s)	362, 470, 883
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	3 cut(s)	59, 676, 938
BshTI	ACCGGT	1 cut(s)	18
BshVI	ATCGAT	1 cut(s)	401
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	913
BsiSI	CCGG	3 cut(s)	19, 449, 716
BslI	CCNNNNNNNGG	5 cut(s)	360, 496, 582, 806, 848
BsnI	GGCC	3 cut(s)	59, 676, 938
Bsp1286I	GDGCHC	3 cut(s)	82, 797, 913
Bsp143I	GATC	5 cut(s)	27, 178, 238, 656, 667
Bsp19I	CCATGG	1 cut(s)	576
BspANI	GGCC	3 cut(s)	59, 676, 938
BspCNI	CTCAG	1 cut(s)	698
BspDI	ATCGAT	1 cut(s)	401
BspLI	GGNNCC	3 cut(s)	35, 720, 796
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	664
BsrFI	RCCGGY	2 cut(s)	18, 715
BsrI	ACTGG	2 cut(s)	429, 853
BssAI	RCCGGY	2 cut(s)	18, 715
BssECI	CCNNGG	5 cut(s)	43, 191, 473, 474, 576
BssMI	GATC	5 cut(s)	27, 178, 238, 656, 667
BssT1I	CCWWGG	2 cut(s)	191, 576
Bst2UI	CCWGG	2 cut(s)	475, 731
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	812
BstDEI	CTNAG	1 cut(s)	685
BstDSI	CCRYGG	1 cut(s)	576
BstEII	GGTNACC	1 cut(s)	485
BstENI	CCTNNNNNAGG	1 cut(s)	804
BstF5I	GGATG	7 cut(s)	10, 54, 127, 370, 424, 836, 868
BstHHI	GCGC	1 cut(s)	756
BstKTI	GATC	5 cut(s)	30, 181, 241, 659, 670
BstMBI	GATC	5 cut(s)	27, 178, 238, 656, 667
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	922
BstNI	CCWGG	2 cut(s)	475, 731
BstPI	GGTNACC	1 cut(s)	485
BstSCI	CCNGG	3 cut(s)	448, 473, 729
BstSFI	CTRYAG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	913
BstV1I	GCAGC	3 cut(s)	362, 470, 883
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	656
Bsu15I	ATCGAT	1 cut(s)	401
BsuRI	GGCC	3 cut(s)	59, 676, 938
BsuTUI	ATCGAT	1 cut(s)	401
BtgI	CCRYGG	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	621
BtsCI	GGATG	7 cut(s)	10, 54, 127, 370, 424, 836, 868
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	1 cut(s)	911
Cac8I	GCNNGC	1 cut(s)	812
CfoI	GCGC	1 cut(s)	756
Cfr10I	RCCGGY	2 cut(s)	18, 715
Cfr13I	GGNCC	4 cut(s)	34, 314, 503, 674
ClaI	ATCGAT	1 cut(s)	401
CseI	GACGC	1 cut(s)	893
Csp6I	GTAC	2 cut(s)	205, 336
CspAI	ACCGGT	1 cut(s)	18
CviAII	CATG	3 cut(s)	116, 293, 577
CviQI	GTAC	2 cut(s)	205, 336
DdeI	CTNAG	1 cut(s)	685
DpnI	GATC	5 cut(s)	29, 180, 240, 658, 669
DpnII	GATC	5 cut(s)	27, 178, 238, 656, 667
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	191, 576
Eco147I	AGGCCT	1 cut(s)	938
Eco24I	GRGCYC	2 cut(s)	82, 797
Eco47I	GGWCC	3 cut(s)	34, 314, 503
Eco91I	GGTNACC	1 cut(s)	485
EcoNI	CCTNNNNNAGG	1 cut(s)	804
EcoO109I	RGGNCCY	1 cut(s)	674
EcoO65I	GGTNACC	1 cut(s)	485
EcoRII	CCWGG	2 cut(s)	473, 729
EcoT14I	CCWWGG	2 cut(s)	191, 576
EcoT38I	GRGCYC	2 cut(s)	82, 797
ErhI	CCWWGG	2 cut(s)	191, 576
FaeI	CATG	3 cut(s)	119, 296, 580
FaiI	YATR	6 cut(s)	117, 268, 294, 542, 578, 726
FatI	CATG	3 cut(s)	115, 292, 576
FbaI	TGATCA	1 cut(s)	667
Fnu4HI	GCNGC	3 cut(s)	351, 459, 897
FokI	GGATG	7 cut(s)	17, 61, 134, 377, 411, 823, 875
FriOI	GRGCYC	2 cut(s)	82, 797
Fsp4HI	GCNGC	3 cut(s)	351, 459, 897
FspBI	CTAG	2 cut(s)	690, 921
GlaI	GCGC	1 cut(s)	755
GluI	GCNGC	3 cut(s)	351, 459, 897
HaeIII	GGCC	3 cut(s)	59, 676, 938
HapII	CCGG	3 cut(s)	19, 449, 716
HgaI	GACGC	1 cut(s)	893
HhaI	GCGC	1 cut(s)	756
Hin1II	CATG	3 cut(s)	119, 296, 580
Hin6I	GCGC	1 cut(s)	754
HinP1I	GCGC	1 cut(s)	754
HinfI	GANTC	6 cut(s)	172, 395, 530, 683, 734, 886
HpaII	CCGG	3 cut(s)	19, 449, 716
HphI	GGTGA	5 cut(s)	181, 418, 448, 497, 626
Hpy166II	GTNNAC	2 cut(s)	529, 911
Hpy188I	TCNGA	4 cut(s)	15, 44, 321, 750
Hpy188III	TCNNGA	2 cut(s)	176, 242
Hpy8I	GTNNAC	2 cut(s)	529, 911
Hpy99I	CGWCG	3 cut(s)	58, 325, 909
HpyAV	CCTTC	2 cut(s)	197, 512
HpyCH4V	TGCA	9 cut(s)	350, 388, 458, 571, 712, 814, 836, 899, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	922
HpyF3I	CTNAG	1 cut(s)	685
Hsp92II	CATG	3 cut(s)	119, 296, 580
HspAI	GCGC	1 cut(s)	754
Ksp22I	TGATCA	1 cut(s)	667
Kzo9I	GATC	5 cut(s)	27, 178, 238, 656, 667
LmnI	GCTCC	3 cut(s)	724, 800, 949
Lsp1109I	GCAGC	3 cut(s)	362, 470, 883
LweI	GCATC	3 cut(s)	39, 579, 845
MaeI	CTAG	2 cut(s)	690, 921
MaeIII	GTNAC	4 cut(s)	140, 343, 418, 485
MalI	GATC	5 cut(s)	29, 180, 240, 658, 669
MboI	GATC	5 cut(s)	27, 178, 238, 656, 667
MboII	GAAGA	4 cut(s)	277, 563, 646, 880
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	3 cut(s)	82, 797, 913
MluCI	AATT	3 cut(s)	73, 217, 815
MlyI	GAGTC	2 cut(s)	524, 677
MmeI	TCCRAC	3 cut(s)	344, 495, 528
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	3 cut(s)	19, 449, 716
MspR9I	CCNGG	3 cut(s)	450, 475, 731
MvaI	CCWGG	2 cut(s)	475, 731
MwoI	GCNNNNNNNGC	1 cut(s)	922
NciI	CCSGG	1 cut(s)	450
NcoI	CCATGG	1 cut(s)	576
NdeII	GATC	5 cut(s)	27, 178, 238, 656, 667
NlaIII	CATG	3 cut(s)	119, 296, 580
NlaIV	GGNNCC	3 cut(s)	35, 720, 796
NmuCI	GTSAC	3 cut(s)	140, 343, 485
PasI	CCCWGGG	1 cut(s)	474
PceI	AGGCCT	1 cut(s)	938
PfeI	GAWTC	4 cut(s)	172, 395, 734, 886
PinAI	ACCGGT	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	352, 460, 898
Ple19I	CGATCG	1 cut(s)	181
PleI	GAGTC	2 cut(s)	524, 677
PpsI	GAGTC	2 cut(s)	524, 677
Psp6I	CCWGG	2 cut(s)	473, 729
PspEI	GGTNACC	1 cut(s)	485
PspGI	CCWGG	2 cut(s)	473, 729
PspN4I	GGNNCC	3 cut(s)	35, 720, 796
PspPI	GGNCC	4 cut(s)	34, 314, 503, 674
PstI	CTGCAG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	656
PvuI	CGATCG	1 cut(s)	181
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	2 cut(s)	206, 337
RsaNI	GTAC	2 cut(s)	205, 336
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	3 cut(s)	351, 459, 897
Sau3AI	GATC	5 cut(s)	27, 178, 238, 656, 667
Sau96I	GGNCC	4 cut(s)	34, 314, 503, 674
SchI	GAGTC	2 cut(s)	524, 677
ScrFI	CCNGG	3 cut(s)	450, 475, 731
SduI	GDGCHC	3 cut(s)	82, 797, 913
SfaNI	GCATC	3 cut(s)	39, 579, 845
SfcI	CTRYAG	1 cut(s)	348
SinI	GGWCC	3 cut(s)	34, 314, 503
SmiMI	CAYNNNNRTG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	3 cut(s)	73, 217, 815
SseBI	AGGCCT	1 cut(s)	938
SspI	AATATT	1 cut(s)	248
SspMI	CTAG	2 cut(s)	690, 921
StuI	AGGCCT	1 cut(s)	938
StyD4I	CCNGG	3 cut(s)	448, 473, 729
StyI	CCWWGG	2 cut(s)	191, 576
TaqI	TCGA	5 cut(s)	82, 177, 288, 401, 587
TasI	AATT	3 cut(s)	73, 217, 815
TfiI	GAWTC	4 cut(s)	172, 395, 734, 886
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	918
TseFI	GTSAC	3 cut(s)	140, 343, 485
TseI	GCWGC	3 cut(s)	350, 458, 896
Tsp45I	GTSAC	3 cut(s)	140, 343, 485
TspDTI	ATGAA	2 cut(s)	138, 387
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	918
VneI	GTGCAC	1 cut(s)	909
VpaK11BI	GGWCC	3 cut(s)	34, 314, 503
XagI	CCTNNNNNAGG	1 cut(s)	804
XspI	CTAG	2 cut(s)	690, 921

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.