Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

44267351 .. 44267707

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG348400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCTTGGGAAAAGGGGTGGAGGTGGTGAAGTCACTTCCCCATTGAAAAAAGGGAGATTGGGATCTGGTGTTGATCAAGGGTCTAATAACTCACTTGGAGCTTCCGTGGGTGATGTGCAATCGGCTCCTATTAGCCAGGATTCCTTGGGTCATCGGAAGCGCAGGGTGCCTGCTTCCACTTTCAATTTTGGGATGGAGGCATCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCATCCCCTACTACTGGTAAGGTAGGGGCTGGGAAGAAACATAAACCAAAGATTCTCTCAGCTGCAAAGCGTCATGCACTGCTCTCAAGGCTTGAGGAGGAGGCCTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.11

Weight (kDa)

10.44

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AclWI	GGATC	1 cut(s)	70
AfiI	CCNNNNNNNGG	2 cut(s)	212, 254
AgsI	TTSAA	2 cut(s)	46, 184
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	101, 302
AluI	AGCT	2 cut(s)	101, 302
AlwI	GGATC	1 cut(s)	70
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	302
AspLEI	GCGC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	38, 122
BanI	GGYRCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	137
BclI	TGATCA	1 cut(s)	73
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	126, 168
BmrFI	CCNGG	1 cut(s)	137
BmsI	GCATC	1 cut(s)	209
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	1 cut(s)	329
BpuEI	CTTGAG	2 cut(s)	310, 353
BsaBI	GATNNNNATC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	105, 144
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 254
Bse1I	ACTGG	1 cut(s)	259
Bse8I	GATNNNNATC	1 cut(s)	61
BseBI	CCWGG	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	105, 144
BseGI	GGATG	3 cut(s)	198, 200, 242
BseJI	GATNNNNATC	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	212, 254
BseMII	CTCAG	1 cut(s)	312
BseNI	ACTGG	1 cut(s)	259
BseRI	GAGGAG	2 cut(s)	350, 353
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	1 cut(s)	269
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	166
BslI	CCNNNNNNNGG	2 cut(s)	212, 254
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	62, 73
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	126, 168
BspPI	GGATC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	166
BsrI	ACTGG	1 cut(s)	259
BssECI	CCNNGG	2 cut(s)	105, 144
BssMI	GATC	2 cut(s)	62, 73
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	171, 218
BstDEI	CTNAG	1 cut(s)	298
BstDSI	CCRYGG	1 cut(s)	105
BstENI	CCTNNNNNAGG	1 cut(s)	210
BstF5I	GGATG	3 cut(s)	198, 200, 242
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	2 cut(s)	65, 76
BstMBI	GATC	2 cut(s)	62, 73
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 328
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstV1I	GCAGC	1 cut(s)	289
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	3 cut(s)	198, 200, 242
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	2 cut(s)	171, 218
CfoI	GCGC	1 cut(s)	162
CseI	GACGC	1 cut(s)	299
CviAII	CATG	1 cut(s)	314
CviJI	RGCY	8 cut(s)	101, 125, 135, 216, 269, 302, 331, 344
CviKI_1	RGCY	8 cut(s)	101, 125, 135, 216, 269, 302, 331, 344
DdeI	CTNAG	1 cut(s)	298
DpnI	GATC	2 cut(s)	64, 75
DpnII	GATC	2 cut(s)	62, 73
Eco130I	CCWWGG	1 cut(s)	144
Eco147I	AGGCCT	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	1 cut(s)	317
FaiI	YATR	2 cut(s)	282, 315
FatI	CATG	1 cut(s)	313
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	3 cut(s)	187, 205, 229
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	344
HgaI	GACGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	317
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	140, 292
HphI	GGTGA	2 cut(s)	38, 122
Hpy188I	TCNGA	1 cut(s)	156
HpyCH4V	TGCA	4 cut(s)	118, 220, 305, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 328
HpyF3I	CTNAG	1 cut(s)	298
Hsp92II	CATG	1 cut(s)	317
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	62, 73
LmnI	GCTCC	3 cut(s)	98, 130, 355
LpnPI	CCDG	7 cut(s)	51, 122, 148, 149, 183, 240, 255
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	64, 75
MboI	GATC	2 cut(s)	62, 73
MboII	GAAGA	2 cut(s)	231, 286
MflI	RGATCY	1 cut(s)	62
MluCI	AATT	1 cut(s)	184
MnlI	CCTC	7 cut(s)	14, 190, 220, 328, 331, 334, 355
MspA1I	CMGCKG	1 cut(s)	302
MspR9I	CCNGG	1 cut(s)	137
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	166, 328
NdeII	GATC	2 cut(s)	62, 73
NlaIII	CATG	1 cut(s)	317
NlaIV	GGNNCC	2 cut(s)	126, 168
NmuCI	GTSAC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	140, 292
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	2 cut(s)	126, 168
PsuI	RGATCY	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	302
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	62, 73
ScrFI	CCNGG	1 cut(s)	137
SetI	ASST	5 cut(s)	25, 103, 231, 264, 304
SfaNI	GCATC	1 cut(s)	209
SmlI	CTYRAG	2 cut(s)	325, 332
SmoI	CTYRAG	2 cut(s)	325, 332
Sse9I	AATT	1 cut(s)	184
SseBI	AGGCCT	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	135
StyI	CCWWGG	1 cut(s)	144
TasI	AATT	1 cut(s)	184
TfiI	GAWTC	2 cut(s)	140, 292
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	94
TspRI	CASTG	1 cut(s)	324
XagI	CCTNNNNNAGG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.