Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

42545528 .. 42546183

Gene Structure 656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008913

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGGAATGGGATACGGGTATGGTTGCAACCTCATCTGGGGGTGGGCAGCGGAGTGTTGTTGTGCAGGGAGGTCCGTCAGCAGTGGTGGAGACAGTTACCAGGCCCAGCGGGTTGCGTGTGCCACCGAGTTTTGCTACTTTGCCGATGTCTGAGGAGGTGGGTGTTCCGTCTGGGGTTGGTTCATTATTGCTGGAAGGTAAGGTGGATGAGAGGCCTCTGGTCTTGACAGAGAATGTTGATGAGGTGCAAACCATTGTTAGGTCTTTACTTGGGAAGTGGGGTGGAAATCGTGAGCCGGATTCCTTGGGTTATAGGAAGCGCAGAGTGCATGCTTCTGCTCTCAATTTTGGATTGGCGACCTCCCCTACCAAAGATTTGCAATTTGAGGTAGGGAAATCTTCTTCCCCTACCAATGGTAAGGTTGGGGCTAGGAAGAAACATAAACCCAAGATTATCTCCGCGGCAAAGCGTCTGCATTGCTCTCTAGGCTGGAGGAGGAGGCTTCCGCTCCTTGAGGATTGTCCCTTTTGTTGGCTTTGTTTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

19.68

Weight (kDa)

9.65

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	464
AciI	CCGC	6 cut(s)	5, 52, 111, 462, 464, 509
AfiI	CCNNNNNNNGG	4 cut(s)	39, 261, 416, 534
AjnI	CCWGG	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	2 cut(s)	104, 215
ApeKI	GCWGC	1 cut(s)	49
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	74, 105
AvaII	GGWCC	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	2 cut(s)	432, 488
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	2 cut(s)	50, 465
BlsI	GCNGC	2 cut(s)	51, 466
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	74, 105
BmrFI	CCNGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	514
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	306, 462
Bsc4I	CCNNNNNNNGG	4 cut(s)	39, 261, 416, 534
Bse3DI	GCAATG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	2 cut(s)	306, 462
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	4 cut(s)	39, 261, 416, 534
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	1 cut(s)	144
BseRI	GAGGAG	3 cut(s)	170, 511, 514
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	107
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	464
BshFI	GGCC	2 cut(s)	106, 217
BsiSI	CCGG	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	4 cut(s)	39, 261, 416, 534
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	106, 217
BspACI	CCGC	6 cut(s)	5, 52, 111, 462, 464, 509
BspANI	GGCC	2 cut(s)	106, 217
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	1 cut(s)	478
BssECI	CCNNGG	2 cut(s)	306, 462
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	214
BstFNI	CGCG	1 cut(s)	464
BstHHI	GCGC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 489
BstNI	CCWGG	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	101
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	1 cut(s)	61
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	106, 217
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	1 cut(s)	333
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	2 cut(s)	74, 105
Cfr42I	CCGCGG	1 cut(s)	465
CseI	GACGC	1 cut(s)	461
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	7 cut(s)	106, 217, 298, 431, 492, 505, 538
CviKI_1	RGCY	7 cut(s)	106, 217, 298, 431, 492, 505, 538
DdeI	CTNAG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	335
FaiI	YATR	4 cut(s)	23, 315, 333, 444
FaqI	GGGAC	1 cut(s)	510
FatI	CATG	1 cut(s)	331
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	2 cut(s)	50, 465
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	2 cut(s)	50, 465
FspBI	CTAG	2 cut(s)	432, 488
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	2 cut(s)	50, 465
GsaI	CCCAGC	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	2 cut(s)	106, 217
HapII	CCGG	1 cut(s)	299
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	1 cut(s)	335
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	299
Hpy188I	TCNGA	1 cut(s)	154
Hpy188III	TCNNGA	2 cut(s)	226, 293
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4V	TGCA	6 cut(s)	29, 67, 250, 331, 382, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 489
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	335
HspAI	GCGC	1 cut(s)	322
KspI	CCGCGG	1 cut(s)	465
LmnI	GCTCC	1 cut(s)	516
Lsp1109I	GCAGC	1 cut(s)	61
MaeI	CTAG	2 cut(s)	432, 488
MaeIII	GTNAC	1 cut(s)	97
MbiI	CCGCTC	1 cut(s)	511
MboII	GAAGA	3 cut(s)	393, 396, 448
MluCI	AATT	2 cut(s)	346, 383
MspA1I	CMGCKG	3 cut(s)	52, 111, 464
MspI	CCGG	1 cut(s)	299
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MvnI	CGCG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	328, 489
NlaIII	CATG	1 cut(s)	335
NspI	RCATGY	1 cut(s)	335
PaeI	GCATGC	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	51, 466
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	1 cut(s)	101
PspPI	GGNCC	2 cut(s)	74, 105
SacII	CCGCGG	1 cut(s)	465
SatI	GCNGC	2 cut(s)	50, 465
Sau96I	GGNCC	2 cut(s)	74, 105
ScrFI	CCNGG	1 cut(s)	103
Sfr303I	CCGCGG	1 cut(s)	465
SgrBI	CCGCGG	1 cut(s)	465
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SphI	GCATGC	1 cut(s)	335
Sse9I	AATT	2 cut(s)	346, 383
SseBI	AGGCCT	1 cut(s)	217
SsiI	CCGC	6 cut(s)	5, 52, 111, 462, 464, 509
SspMI	CTAG	2 cut(s)	432, 488
StuI	AGGCCT	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	97
TasI	AATT	2 cut(s)	346, 383
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	1 cut(s)	174
TspGWI	ACGGA	2 cut(s)	66, 159
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	2 cut(s)	432, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.