Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003110.1

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

86533 .. 87711

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003110.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atggctggtgttgaggatgtgacttcgaagcttgctgcggcccttgccattgggggagatgacttccacaatgaggatccagcggtggagttggcagatccaacctatcattggttggtggggcgtctggtctctgtggatccgatgaaagtggcgccgcacaggtttatggcccaaatcggacagatctggcctgtggctgaccatgggttggtgatccgtgaacgaccaaataggcgatttctcttccgctttgttaatccgaccgataagcaacgggttttggctaaatcactatggtattatcgttcggcaatgttggttttaggggactatgatggggtgggtgatatcatggaggtgactctgaatcgattgccgatttggatccagatcagaggattactgccggcttattccacaccgagttgggcaaggaaggttgctgggtgcttgggtcaggttgttcatgtggatgaaaggagattgaagtggcataaggaagtgaaggtgttggtggtggtggatctcgttcgtccccttcctcggcattttaggtactcattttctaattcttgtgtgaaagagattgatattgagtatttgaatgtcaggggtttgtgcttggtttgtgggttctttgagcatggtgtgggaggttgtggtggtcctccaaaggaagtgtggaatacaggtgtggctgtaacctcatctggaggtggacagttgagtgtggttttacagggtgattcatcggtggtggtggaggctgttccccgtccgagtgggatgggagtatcaccgagttttgaagctttactgggatctaaggtggtgggtgaccatcctgggattgggccattaatgttggaagggaagatagattctcggccgctggtgttggaggagagtgttgatgaggtacaggttatggttaggtcaatgcttgggaaaaagggtggtgatggtgaagttatgtctccattgaagaaagggaggttgtgttctgaatctggtgttgatcgagggcttagtgactcatctagagttgttgtgggaggtgtgccattggctcctggtagtccagattccttgggtcattggaagcataggatatatatatgtttccactttcagttttgggatggagggctcccctaccaaaggcttgcagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

392

Amino Acids

42.92

Weight (kDa)

7.67

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccB7I	CCANNNNNTGG	1 cut(s)	211
AciI	CCGC	5 cut(s)	38, 83, 158, 250, 893
AcoI	YGGCCR	1 cut(s)	890
AcyI	GRCGYC	2 cut(s)	124, 155
AfaI	GTAC	2 cut(s)	560, 924
AfiI	CCNNNNNNNGG	6 cut(s)	73, 111, 211, 546, 854, 1164
AgsI	TTSAA	4 cut(s)	490, 607, 812, 988
AjnI	CCWGG	2 cut(s)	847, 1075
AloI	GAACNNNNNNTCC	2 cut(s)	988, 1020
AluBI	AGCT	2 cut(s)	31, 815
AluI	AGCT	2 cut(s)	31, 815
Alw26I	GTCTC	2 cut(s)	136, 984
AoxI	GGCC	5 cut(s)	39, 171, 191, 857, 890
ApeKI	GCWGC	1 cut(s)	35
AseI	ATTAAT	1 cut(s)	863
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	4 cut(s)	40, 172, 668, 857
AsuHPI	GGTGA	8 cut(s)	226, 359, 373, 758, 792, 851, 974, 980
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	668
BamHI	GGATCC	3 cut(s)	76, 139, 387
BanI	GGYRCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	1155
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	5 cut(s)	332, 784, 852, 959, 1139
BciT130I	CCWGG	2 cut(s)	849, 1077
BcoDI	GTCTC	2 cut(s)	136, 984
BfaI	CTAG	1 cut(s)	1044
BfoI	RGCGCY	1 cut(s)	158
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	4 cut(s)	36, 39, 158, 893
BlsI	GCNGC	4 cut(s)	37, 40, 159, 894
Bme1390I	CCNGG	2 cut(s)	849, 1077
Bme18I	GGWCC	1 cut(s)	668
BmgT120I	GGNCC	4 cut(s)	40, 172, 668, 857
BmiI	GGNNCC	6 cut(s)	78, 141, 156, 389, 1074, 1154
BmrFI	CCNGG	2 cut(s)	849, 1077
BmrI	ACTGGG	1 cut(s)	830
BmuI	ACTGGG	1 cut(s)	830
BpmI	CTGGAG	1 cut(s)	735
Bpu14I	TTCGAA	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	373
BsaBI	GATNNNNATC	2 cut(s)	386, 392
BsaHI	GRCGYC	2 cut(s)	124, 155
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	4 cut(s)	205, 545, 848, 1092
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 111, 211, 546, 854, 1164
Bse118I	RCCGGY	1 cut(s)	409
Bse1I	ACTGG	1 cut(s)	825
Bse3DI	GCAATG	1 cut(s)	321
Bse8I	GATNNNNATC	2 cut(s)	386, 392
BseBI	CCWGG	2 cut(s)	849, 1077
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	4 cut(s)	205, 545, 848, 1092
BseGI	GGATG	5 cut(s)	22, 481, 795, 844, 1150
BseJI	GATNNNNATC	2 cut(s)	386, 392
BseLI	CCNNNNNNNGG	6 cut(s)	73, 111, 211, 546, 854, 1164
BseMI	GCAATG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	825
BseRI	GAGGAG	1 cut(s)	920
BseX3I	CGGCCG	1 cut(s)	890
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	446
Bsh1285I	CGRYCG	2 cut(s)	267, 893
BshFI	GGCC	5 cut(s)	41, 173, 193, 859, 892
BshNI	GGYRCC	1 cut(s)	154
BshVI	ATCGAT	1 cut(s)	373
BsiEI	CGRYCG	2 cut(s)	267, 893
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	2 cut(s)	344, 522
BslI	CCNNNNNNNGG	6 cut(s)	73, 111, 211, 546, 854, 1164
BsmAI	GTCTC	2 cut(s)	136, 984
BsmFI	GGGAC	2 cut(s)	344, 522
BsnI	GGCC	5 cut(s)	41, 173, 193, 859, 892
Bso31I	GGTCTC	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	1155
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	5 cut(s)	38, 83, 158, 250, 893
BspANI	GGCC	5 cut(s)	41, 173, 193, 859, 892
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	6 cut(s)	78, 141, 156, 389, 1074, 1154
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	409
BsrI	ACTGG	1 cut(s)	825
BssAI	RCCGGY	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	205, 545, 848, 1092
BssNI	GRCGYC	2 cut(s)	124, 155
BssT1I	CCWWGG	2 cut(s)	205, 1092
Bst2UI	CCWGG	2 cut(s)	849, 1077
Bst4CI	ACNGT	1 cut(s)	726
Bst6I	CTCTTC	1 cut(s)	251
BstACI	GRCGYC	2 cut(s)	124, 155
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	3 cut(s)	33, 411, 1170
BstDEI	CTNAG	2 cut(s)	828, 1031
BstDSI	CCRYGG	1 cut(s)	205
BstEII	GGTNACC	1 cut(s)	839
BstENI	CCTNNNNNAGG	1 cut(s)	1162
BstF5I	GGATG	5 cut(s)	22, 481, 795, 844, 1150
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstMAI	GTCTC	2 cut(s)	136, 984
BstMCI	CGRYCG	2 cut(s)	267, 893
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	2 cut(s)	849, 1077
BstPI	GGTNACC	1 cut(s)	839
BstSCI	CCNGG	2 cut(s)	847, 1075
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	7 cut(s)	76, 97, 139, 186, 387, 526, 824
BstYI	RGATCY	7 cut(s)	76, 97, 139, 186, 387, 526, 824
BstZI	CGGCCG	1 cut(s)	890
Bsu15I	ATCGAT	1 cut(s)	373
BsuRI	GGCC	5 cut(s)	41, 173, 193, 859, 892
BsuTUI	ATCGAT	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	205
BtsCI	GGATG	5 cut(s)	22, 481, 795, 844, 1150
Cac8I	GCNNGC	3 cut(s)	33, 411, 1170
CfoI	GCGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	409
Cfr13I	GGNCC	4 cut(s)	40, 172, 668, 857
ClaI	ATCGAT	1 cut(s)	373
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	559, 923
CviAII	CATG	4 cut(s)	206, 355, 470, 647
CviQI	GTAC	2 cut(s)	559, 923
DdeI	CTNAG	2 cut(s)	828, 1031
DinI	GGCGCC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	890
EagI	CGGCCG	1 cut(s)	890
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EclXI	CGGCCG	1 cut(s)	890
Eco130I	CCWWGG	2 cut(s)	205, 1092
Eco24I	GRGCYC	1 cut(s)	1155
Eco31I	GGTCTC	1 cut(s)	136
Eco32I	GATATC	1 cut(s)	352
Eco47I	GGWCC	1 cut(s)	668
Eco52I	CGGCCG	1 cut(s)	890
Eco91I	GGTNACC	1 cut(s)	839
EcoNI	CCTNNNNNAGG	1 cut(s)	1162
EcoO65I	GGTNACC	1 cut(s)	839
EcoRII	CCWGG	2 cut(s)	847, 1075
EcoRV	GATATC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	205, 1092
EcoT38I	GRGCYC	1 cut(s)	1155
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	205, 1092
FaeI	CATG	4 cut(s)	209, 358, 473, 650
FaqI	GGGAC	2 cut(s)	344, 522
FatI	CATG	4 cut(s)	205, 354, 469, 646
Fnu4HI	GCNGC	4 cut(s)	36, 39, 158, 893
FokI	GGATG	5 cut(s)	29, 488, 802, 831, 1157
FriOI	GRGCYC	1 cut(s)	1155
Fsp4HI	GCNGC	4 cut(s)	36, 39, 158, 893
FspBI	CTAG	1 cut(s)	1044
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	4 cut(s)	36, 39, 158, 893
GsaI	CCCAGC	1 cut(s)	450
GsuI	CTGGAG	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	5 cut(s)	41, 173, 193, 859, 892
HapII	CCGG	1 cut(s)	410
HgaI	GACGC	1 cut(s)	113
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	2 cut(s)	124, 155
Hin1II	CATG	4 cut(s)	209, 358, 473, 650
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	2 cut(s)	29, 813
HinfI	GANTC	7 cut(s)	364, 370, 749, 884, 1010, 1037, 1088
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	8 cut(s)	226, 359, 373, 758, 792, 851, 974, 980
Hpy166II	GTNNAC	2 cut(s)	224, 722
Hpy188I	TCNGA	7 cut(s)	144, 182, 264, 369, 398, 783, 1009
Hpy188III	TCNNGA	4 cut(s)	391, 714, 1044, 1085
Hpy8I	GTNNAC	2 cut(s)	224, 722
HpyAV	CCTTC	4 cut(s)	433, 502, 551, 866
HpyCH4III	ACNGT	1 cut(s)	726
HpyCH4V	TGCA	1 cut(s)	1172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	2 cut(s)	828, 1031
Hsp92I	GRCGYC	2 cut(s)	124, 155
Hsp92II	CATG	4 cut(s)	209, 358, 473, 650
HspAI	GCGC	1 cut(s)	155
KasI	GGCGCC	1 cut(s)	154
KroI	GCCGGC	1 cut(s)	409
KroNI	GCCGGC	1 cut(s)	411
LmnI	GCTCC	2 cut(s)	1078, 1158
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	1044
MaeIII	GTNAC	5 cut(s)	19, 361, 703, 839, 1034
MboII	GAAGA	3 cut(s)	238, 889, 1000
MflI	RGATCY	7 cut(s)	76, 97, 139, 186, 387, 526, 824
MhlI	GDGCHC	1 cut(s)	1155
MluCI	AATT	1 cut(s)	571
Mly113I	GGCGCC	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	358, 1031
MmeI	TCCRAC	4 cut(s)	125, 287, 849, 882
MroNI	GCCGGC	1 cut(s)	409
MseI	TTAA	2 cut(s)	258, 863
MslI	CAYNNNNRTG	2 cut(s)	359, 474
MspA1I	CMGCKG	2 cut(s)	83, 895
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	849, 1077
MvaI	CCWGG	2 cut(s)	849, 1077
MwoI	GCNNNNNNNGC	1 cut(s)	44
NaeI	GCCGGC	1 cut(s)	411
NarI	GGCGCC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	205
NgoMIV	GCCGGC	1 cut(s)	409
NlaIII	CATG	4 cut(s)	209, 358, 473, 650
NlaIV	GGNNCC	6 cut(s)	78, 141, 156, 389, 1074, 1154
NmeAIII	GCCGAG	2 cut(s)	526, 868
NmuCI	GTSAC	4 cut(s)	19, 361, 839, 1034
NspV	TTCGAA	1 cut(s)	26
PdiI	GCCGGC	1 cut(s)	411
PfeI	GAWTC	5 cut(s)	370, 749, 884, 1010, 1088
PflMI	CCANNNNNTGG	1 cut(s)	211
PkrI	GCNGC	4 cut(s)	37, 40, 159, 894
PleI	GAGTC	2 cut(s)	358, 1031
PluTI	GGCGCC	1 cut(s)	158
PpsI	GAGTC	2 cut(s)	358, 1031
PshBI	ATTAAT	1 cut(s)	863
Psp6I	CCWGG	2 cut(s)	847, 1075
PspEI	GGTNACC	1 cut(s)	839
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	2 cut(s)	847, 1075
PspN4I	GGNNCC	6 cut(s)	78, 141, 156, 389, 1074, 1154
PspPI	GGNCC	4 cut(s)	40, 172, 668, 857
PsuI	RGATCY	7 cut(s)	76, 97, 139, 186, 387, 526, 824
RsaI	GTAC	2 cut(s)	560, 924
RsaNI	GTAC	2 cut(s)	559, 923
RseI	CAYNNNNRTG	2 cut(s)	359, 474
SaqAI	TTAA	2 cut(s)	258, 863
SatI	GCNGC	4 cut(s)	36, 39, 158, 893
Sau96I	GGNCC	4 cut(s)	40, 172, 668, 857
SchI	GAGTC	2 cut(s)	358, 1031
ScrFI	CCNGG	2 cut(s)	849, 1077
SduI	GDGCHC	1 cut(s)	1155
SfoI	GGCGCC	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	668
SmiMI	CAYNNNNRTG	2 cut(s)	359, 474
Sse9I	AATT	1 cut(s)	571
SsiI	CCGC	5 cut(s)	38, 83, 158, 250, 893
SspDI	GGCGCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	1044
StyD4I	CCNGG	2 cut(s)	847, 1075
StyI	CCWWGG	2 cut(s)	205, 1092
TaaI	ACNGT	1 cut(s)	726
TaqI	TCGA	3 cut(s)	26, 373, 1024
TaqII	GACCGA	1 cut(s)	281
TasI	AATT	1 cut(s)	571
TauI	GCSGC	3 cut(s)	41, 160, 895
TfiI	GAWTC	5 cut(s)	370, 749, 884, 1010, 1088
Tru1I	TTAA	2 cut(s)	258, 863
Tru9I	TTAA	2 cut(s)	258, 863
TseFI	GTSAC	4 cut(s)	19, 361, 839, 1034
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	4 cut(s)	19, 361, 839, 1034
TspDTI	ATGAA	4 cut(s)	161, 458, 492, 741
TspGWI	ACGGA	1 cut(s)	209
Van91I	CCANNNNNTGG	1 cut(s)	211
VpaK11BI	GGWCC	1 cut(s)	668
VspI	ATTAAT	1 cut(s)	863
XagI	CCTNNNNNAGG	1 cut(s)	1162
XbaI	TCTAGA	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	3 cut(s)	108, 681, 851
XspI	CTAG	1 cut(s)	1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.