Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

76363984 .. 76365514

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG480000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTGGTGTTGAGGATGTGACTTCGAAGCTTGCTGCGGCCCTCGCTATTGGGGGAGATGACTTCCACAATGAGGATCCAGCGGTGGAGTTGGTGGCTCCAACCTATCACTGGTTGGTGGGGCGTCTGGTCTCCGTGGAACCGACGAAAGCGGCGCCGCACAGGGGTTTGTGTTTGGTCTATGGGTTCTTTGAGCATGGTGTAGGAGGTTGTGGTGGTCCTCCAAAGGAAGTGTGGAATTCGGGTGTGGCTGTAACCTCATCTGGAGGTGGACAGCGGAGTGTGGTTTTGCAGGGTGATTTATCGGTGGTGGTGGGGGCTGTTCCCTGTCAGAGTGGGCTGGGAGTACCACTGGGTTTTGAAGCTTTACCTGGATCTAAGGGGGTGGGTGACCATCCTGGGATTGGGCTATTGATATTGGAAGGGAAGATGGATTCTCGGCCACCAGTGTTGGAGGAGAGTGTTGATGAGGTACAGGTTATGGTTGGGTCAATGCTTGGGAAAAGGGGTGGTGATGGTGAAGTCATGTCTCCATTGAAGAAAGGGAGGTTGGGATCTGGATCTGGTGTTGATCGAGGGCTTAGTGACTCATCTGGAGTTGTTGTGGGAGGTGTGCCATTGGCTCCTGGTAGTCCGGATTCCTTGGGTCATCAGAAGCGTAGGATCTCTGCTTCCACTTTCAGTTTTGGGATGGAAGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCCTGCTATTGGTAAGGTTGGGGATGGGAAGAAACATAAACCAAAGCTTATCTCAGCTGCAAAGCGTCGTGCACTACTCTCTCGGCTTGAGGAGGAGGCCTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

284

Amino Acids

28.87

Weight (kDa)

6.66

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	154
AccIII	TCCGGA	1 cut(s)	634
AciI	CCGC	5 cut(s)	38, 83, 152, 158, 277
AclWI	GGATC	6 cut(s)	71, 84, 382, 562, 568, 671
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	238
AcyI	GRCGYC	2 cut(s)	124, 155
AfaI	GTAC	2 cut(s)	348, 474
AfiI	CCNNNNNNNGG	6 cut(s)	73, 111, 164, 404, 710, 752
AgsI	TTSAA	2 cut(s)	362, 538
AjnI	CCWGG	3 cut(s)	370, 397, 625
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	4 cut(s)	31, 365, 790, 800
AluI	AGCT	4 cut(s)	31, 365, 790, 800
Alw21I	GWGCWC	1 cut(s)	817
Alw26I	GTCTC	2 cut(s)	136, 534
Alw44I	GTGCAC	1 cut(s)	813
AlwI	GGATC	6 cut(s)	71, 84, 382, 562, 568, 671
Aor13HI	TCCGGA	1 cut(s)	634
AoxI	GGCC	3 cut(s)	39, 440, 840
ApaLI	GTGCAC	1 cut(s)	813
ApeKI	GCWGC	2 cut(s)	35, 800
ApoI	RAATTY	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	2 cut(s)	40, 218
AsuHPI	GGTGA	4 cut(s)	308, 401, 524, 530
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	218
BaeGI	GKGCMC	1 cut(s)	817
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	729
Bbv12I	GWGCWC	1 cut(s)	817
BbvI	GCAGC	2 cut(s)	22, 787
BccI	CCATC	5 cut(s)	402, 424, 509, 685, 761
BciT130I	CCWGG	3 cut(s)	372, 399, 627
BcoDI	GTCTC	2 cut(s)	136, 534
BfoI	RGCGCY	1 cut(s)	158
BisI	GCNGC	5 cut(s)	36, 39, 153, 158, 801
BlsI	GCNGC	5 cut(s)	37, 40, 154, 159, 802
Bme1390I	CCNGG	3 cut(s)	372, 399, 627
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	40, 218
BmiI	GGNNCC	6 cut(s)	78, 99, 141, 156, 624, 700
BmrFI	CCNGG	3 cut(s)	372, 399, 627
BmrI	ACTGGG	1 cut(s)	362
BmuI	ACTGGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	729
BplI	GAGNNNNNCTC	1 cut(s)	827
BpmI	CTGGAG	2 cut(s)	285, 615
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	851
BsaBI	GATNNNNATC	1 cut(s)	559
BsaHI	GRCGYC	2 cut(s)	124, 155
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	135, 398, 642
BsaWI	WCCGGW	1 cut(s)	634
BsaXI	ACNNNNNCTCC	2 cut(s)	588, 618
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 111, 164, 404, 710, 752
Bse1I	ACTGG	3 cut(s)	116, 357, 446
Bse8I	GATNNNNATC	1 cut(s)	559
BseAI	TCCGGA	1 cut(s)	634
BseBI	CCWGG	3 cut(s)	372, 399, 627
BseDI	CCNNGG	3 cut(s)	135, 398, 642
BseGI	GGATG	4 cut(s)	22, 394, 696, 772
BseJI	GATNNNNATC	1 cut(s)	559
BseLI	CCNNNNNNNGG	6 cut(s)	73, 111, 164, 404, 710, 752
BseMII	CTCAG	1 cut(s)	810
BseNI	ACTGG	3 cut(s)	116, 357, 446
BseRI	GAGGAG	3 cut(s)	470, 848, 851
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	2 cut(s)	22, 787
BseYI	CCCAGC	1 cut(s)	340
BshFI	GGCC	3 cut(s)	41, 442, 842
BshNI	GGYRCC	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	817
BsiSI	CCGG	1 cut(s)	635
BslI	CCNNNNNNNGG	6 cut(s)	73, 111, 164, 404, 710, 752
BsmAI	GTCTC	2 cut(s)	136, 534
BsnI	GGCC	3 cut(s)	41, 442, 842
Bso31I	GGTCTC	1 cut(s)	136
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	634
Bsp143I	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
BspACI	CCGC	5 cut(s)	38, 83, 152, 158, 277
BspANI	GGCC	3 cut(s)	41, 442, 842
BspCNI	CTCAG	1 cut(s)	809
BspEI	TCCGGA	1 cut(s)	634
BspLI	GGNNCC	6 cut(s)	78, 99, 141, 156, 624, 700
BspPI	GGATC	6 cut(s)	71, 84, 382, 562, 568, 671
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	136
BsrI	ACTGG	3 cut(s)	116, 357, 446
BssECI	CCNNGG	3 cut(s)	135, 398, 642
BssMI	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
BssNI	GRCGYC	2 cut(s)	124, 155
BssT1I	CCWWGG	1 cut(s)	642
Bst2UI	CCWGG	3 cut(s)	372, 399, 627
BstACI	GRCGYC	2 cut(s)	124, 155
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	33, 716
BstDEI	CTNAG	3 cut(s)	378, 581, 796
BstDSI	CCRYGG	1 cut(s)	135
BstEII	GGTNACC	1 cut(s)	389
BstENI	CCTNNNNNAGG	1 cut(s)	708
BstF5I	GGATG	4 cut(s)	22, 394, 696, 772
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	6 cut(s)	79, 377, 557, 563, 574, 666
BstMAI	GTCTC	2 cut(s)	136, 534
BstMBI	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	3 cut(s)	372, 399, 627
BstPI	GGTNACC	1 cut(s)	389
BstSCI	CCNGG	3 cut(s)	370, 397, 625
BstSLI	GKGCMC	1 cut(s)	817
BstV1I	GCAGC	2 cut(s)	22, 787
BstV2I	GAAGAC	1 cut(s)	729
BstX2I	RGATCY	5 cut(s)	76, 374, 554, 560, 663
BstYI	RGATCY	5 cut(s)	76, 374, 554, 560, 663
BsuRI	GGCC	3 cut(s)	41, 442, 842
BtgI	CCRYGG	1 cut(s)	135
BtsCI	GGATG	4 cut(s)	22, 394, 696, 772
BtsIMutI	CAGTG	3 cut(s)	109, 350, 453
Cac8I	GCNNGC	2 cut(s)	33, 716
CfoI	GCGC	1 cut(s)	157
Cfr13I	GGNCC	2 cut(s)	40, 218
CseI	GACGC	2 cut(s)	113, 797
Csp6I	GTAC	2 cut(s)	347, 473
CspCI	CAANNNNNGTGG	2 cut(s)	432, 467
CviAII	CATG	2 cut(s)	197, 526
CviQI	GTAC	2 cut(s)	347, 473
DdeI	CTNAG	3 cut(s)	378, 581, 796
DinI	GGCGCC	1 cut(s)	156
DpnI	GATC	6 cut(s)	78, 376, 556, 562, 573, 665
DpnII	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
EaeI	YGGCCR	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	642
Eco147I	AGGCCT	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	389
EcoNI	CCTNNNNNAGG	1 cut(s)	708
EcoO65I	GGTNACC	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	3 cut(s)	370, 397, 625
EcoT14I	CCWWGG	1 cut(s)	642
EgeI	GGCGCC	1 cut(s)	156
EheI	GGCGCC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	642
FaeI	CATG	2 cut(s)	200, 529
FaiI	YATR	5 cut(s)	183, 198, 482, 527, 780
FatI	CATG	2 cut(s)	196, 525
Fnu4HI	GCNGC	5 cut(s)	36, 39, 153, 158, 801
FokI	GGATG	4 cut(s)	29, 381, 703, 779
Fsp4HI	GCNGC	5 cut(s)	36, 39, 153, 158, 801
GlaI	GCGC	1 cut(s)	156
GluI	GCNGC	5 cut(s)	36, 39, 153, 158, 801
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	2 cut(s)	285, 615
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	3 cut(s)	41, 442, 842
HapII	CCGG	1 cut(s)	635
HgaI	GACGC	2 cut(s)	113, 797
HhaI	GCGC	1 cut(s)	157
Hin1I	GRCGYC	2 cut(s)	124, 155
Hin1II	CATG	2 cut(s)	200, 529
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HindIII	AAGCTT	3 cut(s)	29, 363, 788
HinfI	GANTC	3 cut(s)	434, 587, 638
HpaII	CCGG	1 cut(s)	635
HphI	GGTGA	4 cut(s)	308, 401, 524, 530
Hpy166II	GTNNAC	2 cut(s)	272, 815
Hpy188I	TCNGA	2 cut(s)	333, 654
Hpy188III	TCNNGA	4 cut(s)	264, 558, 594, 635
Hpy8I	GTNNAC	2 cut(s)	272, 815
Hpy99I	CGWCG	2 cut(s)	148, 813
HpyAV	CCTTC	2 cut(s)	416, 689
HpyCH4V	TGCA	4 cut(s)	292, 718, 803, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	3 cut(s)	378, 581, 796
Hsp92I	GRCGYC	2 cut(s)	124, 155
Hsp92II	CATG	2 cut(s)	200, 529
HspAI	GCGC	1 cut(s)	155
KasI	GGCGCC	1 cut(s)	154
Kpn2I	TCCGGA	1 cut(s)	634
Kzo9I	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
LmnI	GCTCC	4 cut(s)	103, 628, 704, 853
Lsp1109I	GCAGC	2 cut(s)	22, 787
MaeIII	GTNAC	4 cut(s)	19, 253, 389, 584
MalI	GATC	6 cut(s)	78, 376, 556, 562, 573, 665
MboI	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
MboII	GAAGA	4 cut(s)	439, 550, 729, 784
MflI	RGATCY	5 cut(s)	76, 374, 554, 560, 663
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	1 cut(s)	238
Mly113I	GGCGCC	1 cut(s)	155
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	2 cut(s)	125, 432
MroI	TCCGGA	1 cut(s)	634
MspA1I	CMGCKG	3 cut(s)	83, 277, 800
MspI	CCGG	1 cut(s)	635
MspR9I	CCNGG	3 cut(s)	372, 399, 627
MvaI	CCWGG	3 cut(s)	372, 399, 627
MwoI	GCNNNNNNNGC	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	155
NdeII	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
NlaIII	CATG	2 cut(s)	200, 529
NlaIV	GGNNCC	6 cut(s)	78, 99, 141, 156, 624, 700
NmeAIII	GCCGAG	2 cut(s)	418, 805
NmuCI	GTSAC	3 cut(s)	19, 389, 584
NspV	TTCGAA	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	842
PfeI	GAWTC	2 cut(s)	434, 638
PkrI	GCNGC	5 cut(s)	37, 40, 154, 159, 802
PleI	GAGTC	1 cut(s)	581
PluTI	GGCGCC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	581
Psp6I	CCWGG	3 cut(s)	370, 397, 625
PspEI	GGTNACC	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	370, 397, 625
PspN4I	GGNNCC	6 cut(s)	78, 99, 141, 156, 624, 700
PspPI	GGNCC	2 cut(s)	40, 218
PsuI	RGATCY	5 cut(s)	76, 374, 554, 560, 663
PvuII	CAGCTG	1 cut(s)	800
RsaI	GTAC	2 cut(s)	348, 474
RsaNI	GTAC	2 cut(s)	347, 473
SatI	GCNGC	5 cut(s)	36, 39, 153, 158, 801
Sau3AI	GATC	6 cut(s)	76, 374, 554, 560, 571, 663
Sau96I	GGNCC	2 cut(s)	40, 218
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	3 cut(s)	372, 399, 627
SduI	GDGCHC	1 cut(s)	817
SfoI	GGCGCC	1 cut(s)	156
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
Sse9I	AATT	1 cut(s)	238
SseBI	AGGCCT	1 cut(s)	842
SsiI	CCGC	5 cut(s)	38, 83, 152, 158, 277
SspDI	GGCGCC	1 cut(s)	154
StuI	AGGCCT	1 cut(s)	842
StyD4I	CCNGG	3 cut(s)	370, 397, 625
StyI	CCWWGG	1 cut(s)	642
TaqI	TCGA	2 cut(s)	26, 574
TasI	AATT	1 cut(s)	238
TauI	GCSGC	3 cut(s)	41, 155, 160
TfiI	GAWTC	2 cut(s)	434, 638
TscAI	CASTG	3 cut(s)	116, 357, 453
TseFI	GTSAC	3 cut(s)	19, 389, 584
TseI	GCWGC	2 cut(s)	35, 800
Tsp45I	GTSAC	3 cut(s)	19, 389, 584
TspGWI	ACGGA	1 cut(s)	124
TspRI	CASTG	3 cut(s)	116, 357, 453
VneI	GTGCAC	1 cut(s)	813
VpaK11BI	GGWCC	1 cut(s)	218
XagI	CCTNNNNNAGG	1 cut(s)	708
XapI	RAATTY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	3 cut(s)	108, 231, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.