Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

42494620 .. 42495668

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008907

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGTTGGTGTTGAGGATGTGACTTCGAAACTTGCGGTGGCCCTTGCCATTGGGGGTGATGACTTTCACCATGAGGATCCAGCAGTGGTCTGGCAGATCCAACCTAACATTGGTTGGTGGGTCGTCTGGTCTCGGTGGAGCCGACGAAGGCGGCGCTGCACCGGTTCATGGCTCAAATTGGGAAAATTTGGCCGTTCGGCAACGTTGGTTTTAAGGGATTATGATGGGGTGGGTGAGGTCATGGATGTGCCTCTGAATAGGTTGCTGATTTGGGTGCAGATCAGGGGGCTTTCGTCGGCTTTTACCACATCGAATTGGGCTCGGAGGGTTGCTGGGTGCTTGGGTCGAGTTGTCCATATGGATGAACGGCGACTGCAGCTGCATGAGGAGGTGAAGGTGTTGGTGGTGGTGAATCTCAATCGGCCTCTTCCACGGCATTTTAGGTACCCTTTTTCTGATTCTTATGTGAAAGAGATTGATCTTGAGTATTTGAATGTTCGAGGATTGTGTTTGGTGTGTGGCTTTTTTGAGCATGGTGTGGGGGGCTGTGGTGGCCCTCCAACGGCGGAATGGGATACGGGTATGGTTGCAACCTCGTCTGGGGGTGGGCAGCGGAGTGTTGTTGTGCAGGGAGGTCCGTCAGCAGTGGTGGAGACAGTTACCAGGCCCAGCGGGTTGCGTGTGCCACCGAGTTTTGCTGCTTTGCCGATGTCTGAGGAGGTGGGTGTTCCGTCTGGGGTTGGTTCATTATTGCTGGAAGGTAAGGTGCATGAGAGGCCTCTGGTCTTGACAGAGAGTGTTGATGAGGTGCAAACCATTGTTAGGTCTTTACTTGGGAAGTGGGGTGGAAATGGTGAGGTCACTTCCCCGCTGAAAAAAGGGAGATTGGGAGTTGGGGCAGGTCAAGGGCTTCACCTCTGGAGTTACTATGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

312

Amino Acids

34.02

Weight (kDa)

8.84

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	890
Acc65I	GGTACC	1 cut(s)	444
AccB1I	GGYRCC	1 cut(s)	444
AciI	CCGC	6 cut(s)	35, 151, 566, 613, 672, 869
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	3 cut(s)	71, 84, 91
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	5 cut(s)	110, 168, 562, 600, 822
AgeI	ACCGGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	1 cut(s)	379
AluI	AGCT	1 cut(s)	379
Alw26I	GTCTC	2 cut(s)	135, 647
AlwI	GGATC	3 cut(s)	71, 84, 91
AoxI	GGCC	6 cut(s)	39, 190, 422, 553, 665, 776
ApeKI	GCWGC	5 cut(s)	156, 376, 379, 610, 698
ApoI	RAATTY	1 cut(s)	185
AsiGI	ACCGGT	1 cut(s)	161
Asp718I	GGTACC	1 cut(s)	444
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	4 cut(s)	40, 554, 635, 666
AsuHPI	GGTGA	7 cut(s)	59, 68, 245, 403, 421, 866, 905
AsuII	TTCGAA	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	635
BamHI	GGATCC	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	444
BanII	GRGCYC	1 cut(s)	322
BbvI	GCAGC	5 cut(s)	143, 366, 388, 622, 685
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	4 cut(s)	177, 383, 449, 579
BciT130I	CCWGG	1 cut(s)	664
BciVI	GTATCC	1 cut(s)	568
BcoDI	GTCTC	2 cut(s)	135, 647
BfmI	CTRYAG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	890
BfuI	GTATCC	1 cut(s)	568
BisI	GCNGC	6 cut(s)	152, 157, 377, 380, 611, 699
BlsI	GCNGC	6 cut(s)	153, 158, 378, 381, 612, 700
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	4 cut(s)	40, 554, 635, 666
BmiI	GGNNCC	3 cut(s)	78, 140, 446
BmrFI	CCNGG	1 cut(s)	664
Bpu14I	TTCGAA	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	1 cut(s)	431
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	5 cut(s)	110, 168, 562, 600, 822
Bse118I	RCCGGY	1 cut(s)	161
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	1 cut(s)	431
BseGI	GGATG	3 cut(s)	22, 250, 367
BseLI	CCNNNNNNNGG	5 cut(s)	110, 168, 562, 600, 822
BseMII	CTCAG	1 cut(s)	705
BseRI	GAGGAG	2 cut(s)	401, 731
BseXI	GCAGC	5 cut(s)	143, 366, 388, 622, 685
BseYI	CCCAGC	2 cut(s)	332, 668
BsgI	GTGCAG	3 cut(s)	142, 296, 647
BshFI	GGCC	6 cut(s)	41, 192, 424, 555, 667, 778
BshNI	GGYRCC	1 cut(s)	444
BshTI	ACCGGT	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	5 cut(s)	110, 168, 562, 600, 822
BsmAI	GTCTC	2 cut(s)	135, 647
BsnI	GGCC	6 cut(s)	41, 192, 424, 555, 667, 778
Bso31I	GGTCTC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	4 cut(s)	76, 96, 279, 478
BspACI	CCGC	6 cut(s)	35, 151, 566, 613, 672, 869
BspANI	GGCC	6 cut(s)	41, 192, 424, 555, 667, 778
BspCNI	CTCAG	1 cut(s)	706
BspLI	GGNNCC	3 cut(s)	78, 140, 446
BspMAI	CTGCAG	1 cut(s)	378
BspMI	ACCTGC	1 cut(s)	890
BspPI	GGATC	3 cut(s)	71, 84, 91
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	444
BspTNI	GGTCTC	1 cut(s)	135
BsrFI	RCCGGY	1 cut(s)	161
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	431
BssMI	GATC	4 cut(s)	76, 96, 279, 478
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	1 cut(s)	658
Bst6I	CTCTTC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	26
BstDEI	CTNAG	1 cut(s)	714
BstDSI	CCRYGG	1 cut(s)	431
BstF5I	GGATG	3 cut(s)	22, 250, 367
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	4 cut(s)	79, 99, 282, 481
BstMAI	GTCTC	2 cut(s)	135, 647
BstMBI	GATC	4 cut(s)	76, 96, 279, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	376, 552, 775
BstNI	CCWGG	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	662
BstSFI	CTRYAG	1 cut(s)	374
BstV1I	GCAGC	5 cut(s)	143, 366, 388, 622, 685
BstX2I	RGATCY	2 cut(s)	76, 96
BstYI	RGATCY	2 cut(s)	76, 96
BsuI	GTATCC	1 cut(s)	568
BsuRI	GGCC	6 cut(s)	41, 192, 424, 555, 667, 778
BtgI	CCRYGG	1 cut(s)	431
BtsCI	GGATG	3 cut(s)	22, 250, 367
BtsI	GCAGTG	2 cut(s)	90, 651
BtsIMutI	CAGTG	2 cut(s)	90, 651
BveI	ACCTGC	1 cut(s)	890
CfoI	GCGC	1 cut(s)	156
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	4 cut(s)	40, 554, 635, 666
Csp6I	GTAC	1 cut(s)	445
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	6 cut(s)	71, 168, 241, 383, 533, 770
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	4 cut(s)	78, 98, 281, 480
DpnII	GATC	4 cut(s)	76, 96, 279, 478
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
EciI	GGCGGA	1 cut(s)	581
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	322
Eco31I	GGTCTC	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	635
EcoRII	CCWGG	1 cut(s)	662
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	6 cut(s)	74, 171, 244, 386, 536, 773
FatI	CATG	6 cut(s)	70, 167, 240, 382, 532, 769
FauI	CCCGC	2 cut(s)	665, 876
FauNDI	CATATG	1 cut(s)	357
Fnu4HI	GCNGC	6 cut(s)	152, 157, 377, 380, 611, 699
FokI	GGATG	3 cut(s)	29, 257, 374
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	6 cut(s)	152, 157, 377, 380, 611, 699
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	6 cut(s)	152, 157, 377, 380, 611, 699
GsaI	CCCAGC	2 cut(s)	336, 672
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	6 cut(s)	41, 192, 424, 555, 667, 778
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	6 cut(s)	74, 171, 244, 386, 536, 773
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HinfI	GANTC	2 cut(s)	412, 458
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	7 cut(s)	59, 68, 245, 403, 421, 866, 905
Hpy188I	TCNGA	4 cut(s)	255, 324, 457, 715
Hpy188III	TCNNGA	3 cut(s)	482, 787, 919
Hpy99I	CGWCG	2 cut(s)	147, 298
HpyAV	CCTTC	3 cut(s)	141, 388, 752
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	1 cut(s)	203
HpyCH4V	TGCA	8 cut(s)	159, 277, 376, 382, 590, 628, 769, 811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	376, 552, 775
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	1 cut(s)	203
Hsp92II	CATG	6 cut(s)	74, 171, 244, 386, 536, 773
HspAI	GCGC	1 cut(s)	154
KpnI	GGTACC	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	76, 96, 279, 478
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	5 cut(s)	143, 366, 388, 622, 685
MaeII	ACGT	1 cut(s)	203
MaeIII	GTNAC	4 cut(s)	19, 658, 859, 923
MalI	GATC	4 cut(s)	78, 98, 281, 480
MboI	GATC	4 cut(s)	76, 96, 279, 478
MboII	GAAGA	1 cut(s)	419
MflI	RGATCY	2 cut(s)	76, 96
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	3 cut(s)	176, 185, 313
MmeI	TCCRAC	2 cut(s)	124, 584
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	2 cut(s)	245, 360
MspA1I	CMGCKG	4 cut(s)	379, 613, 672, 871
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	664
MvaI	CCWGG	1 cut(s)	664
MwoI	GCNNNNNNNGC	3 cut(s)	376, 552, 775
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	4 cut(s)	76, 96, 279, 478
NlaIII	CATG	6 cut(s)	74, 171, 244, 386, 536, 773
NlaIV	GGNNCC	3 cut(s)	78, 140, 446
NmuCI	GTSAC	2 cut(s)	19, 859
NspV	TTCGAA	1 cut(s)	26
PceI	AGGCCT	1 cut(s)	778
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PfeI	GAWTC	2 cut(s)	412, 458
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	153, 158, 378, 381, 612, 700
Psp1406I	AACGTT	1 cut(s)	203
Psp6I	CCWGG	1 cut(s)	662
PspFI	CCCAGC	2 cut(s)	332, 668
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	3 cut(s)	78, 140, 446
PspPI	GGNCC	4 cut(s)	40, 554, 635, 666
PstI	CTGCAG	1 cut(s)	378
PsuI	RGATCY	2 cut(s)	76, 96
PvuII	CAGCTG	1 cut(s)	379
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	245, 360
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	6 cut(s)	152, 157, 377, 380, 611, 699
Sau3AI	GATC	4 cut(s)	76, 96, 279, 478
Sau96I	GGNCC	4 cut(s)	40, 554, 635, 666
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	374
SfuI	TTCGAA	1 cut(s)	26
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	245, 360
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	176, 185, 313
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	6 cut(s)	35, 151, 566, 613, 672, 869
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	1 cut(s)	662
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	1 cut(s)	206
TaqI	TCGA	4 cut(s)	26, 311, 346, 499
TasI	AATT	3 cut(s)	176, 185, 313
TauI	GCSGC	1 cut(s)	154
TfiI	GAWTC	2 cut(s)	412, 458
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	2 cut(s)	90, 651
TseFI	GTSAC	2 cut(s)	19, 859
TseI	GCWGC	5 cut(s)	156, 376, 379, 610, 698
Tsp45I	GTSAC	2 cut(s)	19, 859
TspDTI	ATGAA	3 cut(s)	156, 378, 735
TspGWI	ACGGA	2 cut(s)	627, 720
TspRI	CASTG	2 cut(s)	90, 651
VpaK11BI	GGWCC	1 cut(s)	635
XapI	RAATTY	1 cut(s)	185
XcmI	CCANNNNNNNNNTGG	3 cut(s)	87, 107, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.