Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

49292262 .. 49292624

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014203

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTGGGAAAAGGGGTGGTGATGGTGAAGTCACTTCTCCATTGAAGAAAGGGAGGTTGGGATCTGGATCTGGTGTTGTTCGAGGGCTTTGTAACTCATCTGGAGTTGTTGTGGGAGGTGTGCCATCGGCTCCTGGTAGCCTAGATTCCTTGGGTCATTGGAAGCGTAGGATCTCTGCTTCCACTTTCAGTTTTGGGATGGAGGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCCTGGTATTGGTAAGGTTGGGGATGGGAAGAAACATAAACCAAAGATTATCTCAGCTGCAAAGCGTCGTGCACTACTCTCTCGGCTTGCGGAGGAGGCCTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

121

Amino Acids

12.16

Weight (kDa)

10.62

Isoelectric Point (pI)

50.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	3 cut(s)	70, 76, 179
AfiI	CCNNNNNNNGG	2 cut(s)	218, 260
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	2 cut(s)	133, 253
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	1 cut(s)	308
AluI	AGCT	1 cut(s)	308
Alw21I	GWGCWC	1 cut(s)	325
Alw44I	GTGCAC	1 cut(s)	321
AlwI	GGATC	3 cut(s)	70, 76, 179
AoxI	GGCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	321
ApeKI	GCWGC	1 cut(s)	308
AsuHPI	GGTGA	2 cut(s)	32, 38
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	4 cut(s)	17, 133, 193, 269
BciT130I	CCWGG	2 cut(s)	135, 255
BfaI	CTAG	1 cut(s)	143
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	135, 255
BmiI	GGNNCC	2 cut(s)	132, 208
BmrFI	CCNGG	2 cut(s)	135, 255
BpiI	GAAGAC	1 cut(s)	237
BplI	GAGNNNNNCTC	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	123
BsaBI	GATNNNNATC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 260
Bse8I	GATNNNNATC	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	135, 255
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	2 cut(s)	204, 280
BseJI	GATNNNNATC	1 cut(s)	67
BseLI	CCNNNNNNNGG	2 cut(s)	218, 260
BseMII	CTCAG	1 cut(s)	318
BseRI	GAGGAG	1 cut(s)	359
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	218, 260
BsnI	GGCC	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	209, 325
Bsp143I	GATC	3 cut(s)	62, 68, 171
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	132, 208
BspPI	GGATC	3 cut(s)	70, 76, 179
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	3 cut(s)	62, 68, 171
BssT1I	CCWWGG	1 cut(s)	150
Bst2UI	CCWGG	2 cut(s)	135, 255
BstC8I	GCNNGC	2 cut(s)	224, 339
BstDEI	CTNAG	1 cut(s)	304
BstENI	CCTNNNNNAGG	1 cut(s)	216
BstF5I	GGATG	2 cut(s)	204, 280
BstKTI	GATC	3 cut(s)	65, 71, 174
BstMBI	GATC	3 cut(s)	62, 68, 171
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	135, 255
BstSCI	CCNGG	2 cut(s)	133, 253
BstSLI	GKGCMC	1 cut(s)	325
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	3 cut(s)	62, 68, 171
BstYI	RGATCY	3 cut(s)	62, 68, 171
BsuRI	GGCC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	204, 280
Cac8I	GCNNGC	2 cut(s)	224, 339
CseI	GACGC	1 cut(s)	305
CviJI	RGCY	8 cut(s)	88, 131, 141, 207, 222, 308, 337, 350
CviKI_1	RGCY	8 cut(s)	88, 131, 141, 207, 222, 308, 337, 350
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	3 cut(s)	64, 70, 173
DpnII	GATC	3 cut(s)	62, 68, 171
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	133, 253
EcoT14I	CCWWGG	1 cut(s)	150
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	150
FaiI	YATR	1 cut(s)	288
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	211, 287
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	1 cut(s)	143
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	350
HgaI	GACGC	1 cut(s)	305
HinfI	GANTC	1 cut(s)	146
HphI	GGTGA	2 cut(s)	32, 38
Hpy166II	GTNNAC	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	66, 102
Hpy8I	GTNNAC	1 cut(s)	323
Hpy99I	CGWCG	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	226, 311, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpyF3I	CTNAG	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	62, 68, 171
LmnI	GCTCC	3 cut(s)	136, 212, 361
LpnPI	CCDG	7 cut(s)	51, 57, 87, 120, 147, 240, 267
Lsp1109I	GCAGC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	143
MaeIII	GTNAC	2 cut(s)	31, 92
MalI	GATC	3 cut(s)	64, 70, 173
MboI	GATC	3 cut(s)	62, 68, 171
MboII	GAAGA	3 cut(s)	58, 237, 292
MflI	RGATCY	3 cut(s)	62, 68, 171
MhlI	GDGCHC	2 cut(s)	209, 325
MnlI	CCTC	9 cut(s)	48, 77, 110, 196, 226, 259, 337, 340, 361
MspA1I	CMGCKG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	135, 255
MvaI	CCWGG	2 cut(s)	135, 255
MwoI	GCNNNNNNNGC	1 cut(s)	347
NdeII	GATC	3 cut(s)	62, 68, 171
NlaIV	GGNNCC	2 cut(s)	132, 208
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	133, 253
PspGI	CCWGG	2 cut(s)	133, 253
PspN4I	GGNNCC	2 cut(s)	132, 208
PsuI	RGATCY	3 cut(s)	62, 68, 171
PvuII	CAGCTG	1 cut(s)	308
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	3 cut(s)	62, 68, 171
ScrFI	CCNGG	2 cut(s)	135, 255
SduI	GDGCHC	2 cut(s)	209, 325
SetI	ASST	5 cut(s)	59, 121, 237, 270, 310
SseBI	AGGCCT	1 cut(s)	350
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	143
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	133, 253
StyI	CCWWGG	1 cut(s)	150
TaqI	TCGA	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	31
VneI	GTGCAC	1 cut(s)	321
XagI	CCTNNNNNAGG	1 cut(s)	216
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.