Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

47562080 .. 47563063

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTGGTGTGGAAGATGTTACGTCCAATCTTGTAGCGGCCCTGGCTATCAGGGTTGATGATCTCCAGTGTGAGGATGCCGATGTGGAATTGACGGAACCAACCTATCATTGGTTGGTGGCTAGTTTGGTCTCGGTGGAGCTGACGAAAGCAGCAGTGCACCTCTTCATGGCGCAAATTGGGCAGATCACTGGGTTGCCGCCGGACTTTATCACACCGACTTGGGCTCGGAAGATTGCTGGGCGTCTGGGTCATGTTGTCTATGTTAATGAGAGGAGGTTGCGTAATTATGAGGAGGAACTTGATTTTGAATACTTGAATGTGAGGGGGTTTGTGTTTGGTTTTGAATTTTTTGAACATGGAGTGGGTGGTTATGGTGGTTCTTCGGCGGAGGATTGGGGCCTGACTGTGGGAGCGGCCTCGTCTGGTGGAAGGACGAAGGGTGTCGTTGTGCAAGTGGGACCACCAGTGGTGGTAGAGACTGCATCTTGGCCTAGAGCTATGGGAATATCACCTAGCTTTGCAGCTTTGCTGACATCGAAGGGTGTAGGTGATCGATATGGAGATTATTTGTTGTTTTTGGATGATAGGGTGAACCCAATGCTCCTAAAAACTAGGGAGGTTATTGAGGAGGTGCAGACTATGGCTGCATCTATTCTTGGTAAGCGGGATGGAAGTGGGGATGCCACTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.07

Weight (kDa)

4.81

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	416
AciI	CCGC	5 cut(s)	38, 200, 389, 416, 667
AcsI	RAATTY	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	244
AfiI	CCNNNNNNNGG	4 cut(s)	73, 111, 169, 409
AgsI	TTSAA	4 cut(s)	311, 319, 347, 356
AjnI	CCWGG	1 cut(s)	42
AluBI	AGCT	4 cut(s)	142, 500, 519, 527
AluI	AGCT	4 cut(s)	142, 500, 519, 527
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	136, 473
Alw44I	GTGCAC	1 cut(s)	158
AoxI	GGCC	4 cut(s)	39, 400, 417, 491
ApaLI	GTGCAC	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	152, 524, 647
ApoI	RAATTY	1 cut(s)	347
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	3 cut(s)	40, 400, 461
AsuHPI	GGTGA	3 cut(s)	504, 563, 604
AvaII	GGWCC	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	3 cut(s)	164, 536, 634
BccI	CCATC	1 cut(s)	665
BciT130I	CCWGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	136, 473
BfaI	CTAG	4 cut(s)	123, 495, 516, 615
BisI	GCNGC	6 cut(s)	39, 153, 200, 417, 525, 648
BlsI	GCNGC	6 cut(s)	40, 154, 201, 418, 526, 649
Bme1390I	CCNGG	1 cut(s)	44
Bme18I	GGWCC	1 cut(s)	461
BmgT120I	GGNCC	3 cut(s)	40, 400, 461
BmiI	GGNNCC	3 cut(s)	99, 401, 462
BmrFI	CCNGG	1 cut(s)	44
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	4 cut(s)	67, 494, 659, 673
BmuI	ACTGGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	556
BsaHI	GRCGYC	1 cut(s)	244
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 111, 169, 409
Bse1I	ACTGG	3 cut(s)	67, 196, 467
BseBI	CCWGG	1 cut(s)	44
BseCI	ATCGAT	1 cut(s)	556
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	4 cut(s)	82, 589, 676, 688
BseLI	CCNNNNNNNGG	4 cut(s)	73, 111, 169, 409
BseNI	ACTGG	3 cut(s)	67, 196, 467
BseRI	GAGGAG	3 cut(s)	289, 308, 644
BseSI	GKGCMC	1 cut(s)	162
BseXI	GCAGC	3 cut(s)	164, 536, 634
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	4 cut(s)	41, 402, 419, 493
BshVI	ATCGAT	1 cut(s)	556
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	4 cut(s)	73, 111, 169, 409
BsmAI	GTCTC	2 cut(s)	136, 473
BsmFI	GGGAC	1 cut(s)	474
BsnI	GGCC	4 cut(s)	41, 402, 419, 493
Bso31I	GGTCTC	1 cut(s)	136
Bsp1286I	GDGCHC	2 cut(s)	162, 229
Bsp143I	GATC	3 cut(s)	61, 186, 553
BspACI	CCGC	5 cut(s)	38, 200, 389, 416, 667
BspANI	GGCC	4 cut(s)	41, 402, 419, 493
BspDI	ATCGAT	1 cut(s)	556
BspLI	GGNNCC	3 cut(s)	99, 401, 462
BspTNI	GGTCTC	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	67, 196, 467
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	3 cut(s)	61, 186, 553
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	44
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	1 cut(s)	170
BstACI	GRCGYC	1 cut(s)	244
BstF5I	GGATG	4 cut(s)	82, 589, 676, 688
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	64, 189, 556
BstMAI	GTCTC	2 cut(s)	136, 473
BstMBI	GATC	3 cut(s)	61, 186, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 181
BstNI	CCWGG	1 cut(s)	44
BstSCI	CCNGG	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	164, 536, 634
Bsu15I	ATCGAT	1 cut(s)	556
BsuRI	GGCC	4 cut(s)	41, 402, 419, 493
BsuTUI	ATCGAT	1 cut(s)	556
BtsCI	GGATG	4 cut(s)	82, 589, 676, 688
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	4 cut(s)	74, 162, 189, 474
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	3 cut(s)	40, 400, 461
ClaI	ATCGAT	1 cut(s)	556
CseI	GACGC	1 cut(s)	233
CviAII	CATG	3 cut(s)	169, 254, 359
DpnI	GATC	3 cut(s)	63, 188, 555
DpnII	GATC	3 cut(s)	61, 186, 553
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
EciI	GGCGGA	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	229
Eco31I	GGTCTC	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	461
EcoO109I	RGGNCCY	1 cut(s)	400
EcoRII	CCWGG	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	229
FaeI	CATG	3 cut(s)	172, 257, 362
FaiI	YATR	9 cut(s)	170, 255, 264, 291, 360, 375, 503, 561, 644
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	168, 253, 358
FauI	CCCGC	1 cut(s)	660
Fnu4HI	GCNGC	6 cut(s)	39, 153, 200, 417, 525, 648
FokI	GGATG	3 cut(s)	89, 596, 683
FriOI	GRGCYC	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	39, 153, 200, 417, 525, 648
FspBI	CTAG	4 cut(s)	123, 495, 516, 615
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	6 cut(s)	39, 153, 200, 417, 525, 648
GsaI	CCCAGC	1 cut(s)	243
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	4 cut(s)	41, 402, 419, 493
HapII	CCGG	1 cut(s)	203
HgaI	GACGC	1 cut(s)	233
HhaI	GCGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	3 cut(s)	172, 257, 362
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	3 cut(s)	504, 563, 604
Hpy166II	GTNNAC	2 cut(s)	160, 595
Hpy188I	TCNGA	1 cut(s)	231
Hpy8I	GTNNAC	2 cut(s)	160, 595
HpyAV	CCTTC	3 cut(s)	426, 433, 535
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	6 cut(s)	160, 454, 485, 524, 637, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 181
HpySE526I	ACGT	1 cut(s)	23
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	3 cut(s)	172, 257, 362
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	61, 186, 553
LmnI	GCTCC	3 cut(s)	139, 413, 609
Lsp1109I	GCAGC	3 cut(s)	164, 536, 634
LweI	GCATC	4 cut(s)	67, 494, 659, 673
MaeI	CTAG	4 cut(s)	123, 495, 516, 615
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	3 cut(s)	63, 188, 555
MbiI	CCGCTC	1 cut(s)	416
MboI	GATC	3 cut(s)	61, 186, 553
MboII	GAAGA	4 cut(s)	26, 157, 244, 375
MhlI	GDGCHC	2 cut(s)	162, 229
MluCI	AATT	4 cut(s)	89, 177, 286, 347
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	44, 181
NdeII	GATC	3 cut(s)	61, 186, 553
NlaIII	CATG	3 cut(s)	172, 257, 362
NlaIV	GGNNCC	3 cut(s)	99, 401, 462
PkrI	GCNGC	6 cut(s)	40, 154, 201, 418, 526, 649
Psp6I	CCWGG	1 cut(s)	42
PspFI	CCCAGC	1 cut(s)	239
PspGI	CCWGG	1 cut(s)	42
PspN4I	GGNNCC	3 cut(s)	99, 401, 462
PspPI	GGNCC	3 cut(s)	40, 400, 461
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	6 cut(s)	39, 153, 200, 417, 525, 648
Sau3AI	GATC	3 cut(s)	61, 186, 553
Sau96I	GGNCC	3 cut(s)	40, 400, 461
ScrFI	CCNGG	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	162, 229
SfaNI	GCATC	4 cut(s)	67, 494, 659, 673
SinI	GGWCC	1 cut(s)	461
Sse9I	AATT	4 cut(s)	89, 177, 286, 347
SsiI	CCGC	5 cut(s)	38, 200, 389, 416, 667
SspMI	CTAG	4 cut(s)	123, 495, 516, 615
StyD4I	CCNGG	1 cut(s)	42
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	539, 556
TasI	AATT	4 cut(s)	89, 177, 286, 347
TauI	GCSGC	3 cut(s)	41, 202, 419
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	4 cut(s)	74, 162, 196, 474
TseI	GCWGC	3 cut(s)	152, 524, 647
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	4 cut(s)	74, 162, 196, 474
VneI	GTGCAC	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	461
XapI	RAATTY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XspI	CTAG	4 cut(s)	123, 495, 516, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.