Rh5CG504200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001406
Physical Location & Seq
Forward (+)
70070579 .. 70072394
1816 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG504200.1

Sequence Viewer

Length: 426 bp
ATGGATTCTCGGCCACCAGTGTTGGAGGAGAGTGTTGATGAGGTACAGGTTATGGTTGGGTCAATGCTTGGGAAAAGGGGTGGTGATGGTGAAGTCATGTCTCCATTGAAGAAAGGGAGGTTGGGATCTGGATCTGGTGTTGATCGAGGGCTTAGTGACTCATCTGGAGTTGTTGTGGGAGGTGTGCCATTGGCTCCTGGTAGTCCGGATTCCTTGGGTCATCAGAAGCGTAGGATCTCTGCTTCCACTTTCAGTTTTGGGATGGAAGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCCTGCTATTGGTAAGGTTGGGGATGGGAAGAAACATAAACCAAAGCTTATCTCAGCTGCAAAGCGTCGTGCACTACTCTCTCGGCTTGAGGAGGAGGCCTCTGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

14.5

Weight (kDa)

9.69

Isoelectric Point (pI)

61.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 3 cut(s) 133, 139, 242
AcoI YGGCCR 1 cut(s) 11
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 2 cut(s) 281, 323
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
AluBI AGCT 2 cut(s) 361, 371
AluI AGCT 2 cut(s) 361, 371
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 384
AlwI GGATC 3 cut(s) 133, 139, 242
Aor13HI TCCGGA 1 cut(s) 205
AoxI GGCC 2 cut(s) 11, 411
ApaLI GTGCAC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 371
AsuHPI GGTGA 2 cut(s) 95, 101
BaeGI GKGCMC 1 cut(s) 388
BbsI GAAGAC 1 cut(s) 300
Bbv12I GWGCWC 1 cut(s) 388
BbvI GCAGC 1 cut(s) 358
BccI CCATC 3 cut(s) 80, 256, 332
BciT130I CCWGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 105
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 195, 271
BmrFI CCNGG 1 cut(s) 198
BpiI GAAGAC 1 cut(s) 300
BplI GAGNNNNNCTC 1 cut(s) 398
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 422
BsaBI GATNNNNATC 1 cut(s) 130
BsaJI CCNNGG 1 cut(s) 213
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 323
Bse1I ACTGG 1 cut(s) 17
Bse8I GATNNNNATC 1 cut(s) 130
BseAI TCCGGA 1 cut(s) 205
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 267, 343
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 281, 323
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 17
BseRI GAGGAG 3 cut(s) 41, 419, 422
BseSI GKGCMC 1 cut(s) 388
BseXI GCAGC 1 cut(s) 358
BshFI GGCC 2 cut(s) 13, 413
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 2 cut(s) 281, 323
BsmAI GTCTC 1 cut(s) 105
BsnI GGCC 2 cut(s) 13, 413
Bsp1286I GDGCHC 1 cut(s) 388
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 125, 131, 142, 234
BspANI GGCC 2 cut(s) 13, 413
BspCNI CTCAG 1 cut(s) 380
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 195, 271
BspPI GGATC 3 cut(s) 133, 139, 242
BsrI ACTGG 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 4 cut(s) 125, 131, 142, 234
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 152, 367
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 2 cut(s) 267, 343
BstKTI GATC 4 cut(s) 128, 134, 145, 237
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 125, 131, 142, 234
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 1 cut(s) 196
BstSLI GKGCMC 1 cut(s) 388
BstV1I GCAGC 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 300
BstX2I RGATCY 3 cut(s) 125, 131, 234
BstYI RGATCY 3 cut(s) 125, 131, 234
BsuRI GGCC 2 cut(s) 13, 413
BtsCI GGATG 2 cut(s) 267, 343
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 287
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 44
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 1 cut(s) 97
CviJI RGCY 9 cut(s) 13, 151, 194, 270, 285, 361, 371, 400, 413
CviKI_1 RGCY 9 cut(s) 13, 151, 194, 270, 285, 361, 371, 400, 413
CviQI GTAC 1 cut(s) 44
DdeI CTNAG 2 cut(s) 152, 367
DpnI GATC 4 cut(s) 127, 133, 144, 236
DpnII GATC 4 cut(s) 125, 131, 142, 234
EaeI YGGCCR 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 53, 98, 351
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 372
FokI GGATG 2 cut(s) 274, 350
Fsp4HI GCNGC 1 cut(s) 372
GluI GCNGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 2 cut(s) 13, 413
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 368
Hin1II CATG 1 cut(s) 100
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 3 cut(s) 5, 158, 209
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 95, 101
Hpy166II GTNNAC 1 cut(s) 386
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 3 cut(s) 129, 165, 206
Hpy8I GTNNAC 1 cut(s) 386
Hpy99I CGWCG 1 cut(s) 384
HpyAV CCTTC 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 289, 374, 386
HpyF3I CTNAG 2 cut(s) 152, 367
Hsp92II CATG 1 cut(s) 100
Kpn2I TCCGGA 1 cut(s) 205
Kzo9I GATC 4 cut(s) 125, 131, 142, 234
LmnI GCTCC 3 cut(s) 199, 275, 424
LpnPI CCDG 9 cut(s) 30, 32, 114, 120, 150, 183, 210, 219, 330
Lsp1109I GCAGC 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 155
MalI GATC 4 cut(s) 127, 133, 144, 236
MboI GATC 4 cut(s) 125, 131, 142, 234
MboII GAAGA 3 cut(s) 121, 300, 355
MflI RGATCY 3 cut(s) 125, 131, 234
MhlI GDGCHC 1 cut(s) 388
MlyI GAGTC 1 cut(s) 152
MroI TCCGGA 1 cut(s) 205
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
NdeII GATC 4 cut(s) 125, 131, 142, 234
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 2 cut(s) 195, 271
NmeAIII GCCGAG 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 155
PceI AGGCCT 1 cut(s) 413
PfeI GAWTC 2 cut(s) 5, 209
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 2 cut(s) 195, 271
PsuI RGATCY 3 cut(s) 125, 131, 234
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 4 cut(s) 125, 131, 142, 234
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 198
SduI GDGCHC 1 cut(s) 388
SetI ASST 8 cut(s) 45, 51, 122, 184, 300, 333, 363, 373
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 413
StuI AGGCCT 1 cut(s) 413
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 145
TfiI GAWTC 2 cut(s) 5, 209
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 155
TspRI CASTG 1 cut(s) 24
VneI GTGCAC 1 cut(s) 384
XagI CCTNNNNNAGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.