Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

55078358 .. 55079520

Gene Structure 1163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G036470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGATGTGCCTCAAAACTGGTTGCCGATATGGGTGCAGATCAGAGGGTTGCCGCTGGCCTACACTACTCCTACTTTGGTCCGGAAGATTGCGGGGTGTCTGGGTCGGGTTGTTCATGTGGATGAAAGGAGGTTGAAGCGGTATGAGGAGGTGGAGGTTTTGGTGGTGGGTGGTTCCTCTATGGTGGTAGAGAGTGTAGCCCGTCCAAGTAGGGTGAGTGTGCCACCAGGTTTTGCTGCCTTACCCGATCCAAAGGTGGTTGGTGATCACTTTGGGGTTAAGCCTCTCTTGTTGGAAGGGAAGATGAATTCACTGCCTCTCGAATCAAAGGACATTGTTGATGAGGCGCAAACCATGGTTGAATTGATGCTGAGCAAAAGGGGTGGAGGAGGAGAAATTACCTCCCCATTGAAAAAAGGGCGATTGGGGCTTGGTGTTGATTCAGGGATTAAGGGCTCACCTGGGGCTTCAATGGGTGGTGTGCAATCTGATGCTCTTAGCCCGGATTCCTTGGGTCATCGGAAGCACAGTGCGGATGCTTCCACCTTCAGTTTTGGTATGAAGACCTCTCCTACAAAGGGTCTGCAGTTTGAGGTTCTCATTTTAACTGGACCACACACATGGTGGGTTCCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

22.7

Weight (kDa)

9.04

Isoelectric Point (pI)

37.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	81
AciI	CCGC	4 cut(s)	53, 92, 139, 533
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	532
AdeI	CACNNNGTG	1 cut(s)	624
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgsI	TTSAA	4 cut(s)	136, 362, 412, 471
AjnI	CCWGG	2 cut(s)	226, 460
AlwI	GGATC	1 cut(s)	242
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	79, 611
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	226, 275, 450
AvaII	GGWCC	2 cut(s)	79, 611
BanII	GRGCYC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	16, 50
BciT130I	CCWGG	2 cut(s)	228, 462
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	584
BisI	GCNGC	2 cut(s)	53, 237
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	54, 238
Bme1390I	CCNGG	3 cut(s)	228, 462, 503
Bme18I	GGWCC	2 cut(s)	79, 611
BmgT120I	GGNCC	2 cut(s)	79, 611
BmiI	GGNNCC	2 cut(s)	175, 630
BmrFI	CCNGG	3 cut(s)	228, 462, 503
BmsI	GCATC	3 cut(s)	357, 481, 526
BpiI	GAAGAC	1 cut(s)	569
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	3 cut(s)	354, 461, 510
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse1I	ACTGG	2 cut(s)	23, 613
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	2 cut(s)	228, 462
BseDI	CCNNGG	3 cut(s)	354, 461, 510
BseGI	GGATG	3 cut(s)	10, 127, 541
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	23, 613
BseRI	GAGGAG	3 cut(s)	161, 402, 405
BseXI	GCAGC	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	59
BsiSI	CCGG	2 cut(s)	82, 503
BslI	CCNNNNNNNGG	1 cut(s)	578
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	458
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	39, 247, 265
Bsp1720I	GCTNAGC	1 cut(s)	371
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	4 cut(s)	53, 92, 139, 533
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	81
BspLI	GGNNCC	2 cut(s)	175, 630
BspMAI	CTGCAG	1 cut(s)	588
BspPI	GGATC	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	23, 613
BssECI	CCNNGG	3 cut(s)	354, 461, 510
BssMI	GATC	3 cut(s)	39, 247, 265
BssT1I	CCWWGG	2 cut(s)	354, 510
Bst2UI	CCWGG	2 cut(s)	228, 462
Bst4CI	ACNGT	1 cut(s)	530
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	2 cut(s)	371, 497
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	3 cut(s)	10, 127, 541
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	42, 250, 268
BstMBI	GATC	3 cut(s)	39, 247, 265
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	2 cut(s)	228, 462
BstSCI	CCNGG	3 cut(s)	226, 460, 501
BstSFI	CTRYAG	1 cut(s)	584
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	621
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	3 cut(s)	10, 127, 541
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	2 cut(s)	311, 535
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	79, 611
CsiI	ACCWGGT	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	364, 399
CviAII	CATG	3 cut(s)	116, 355, 621
CviJI	RGCY	7 cut(s)	59, 200, 283, 430, 456, 467, 501
CviKI_1	RGCY	7 cut(s)	59, 200, 283, 430, 456, 467, 501
DdeI	CTNAG	2 cut(s)	371, 497
DpnI	GATC	3 cut(s)	41, 249, 267
DpnII	GATC	3 cut(s)	39, 247, 265
DraIII	CACNNNGTG	1 cut(s)	624
Eco130I	CCWWGG	2 cut(s)	354, 510
Eco24I	GRGCYC	1 cut(s)	458
Eco47I	GGWCC	2 cut(s)	79, 611
Eco57I	CTGAAG	1 cut(s)	532
EcoRI	GAATTC	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	226, 460
EcoT14I	CCWWGG	2 cut(s)	354, 510
EcoT38I	GRGCYC	1 cut(s)	458
ErhI	CCWWGG	2 cut(s)	354, 510
FaeI	CATG	3 cut(s)	119, 358, 624
FaiI	YATR	7 cut(s)	31, 117, 144, 182, 356, 560, 622
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FatI	CATG	3 cut(s)	115, 354, 620
FauI	CCCGC	1 cut(s)	85
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	2 cut(s)	53, 237
FokI	GGATG	3 cut(s)	17, 134, 548
FriOI	GRGCYC	1 cut(s)	458
Fsp4HI	GCNGC	2 cut(s)	53, 237
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	2 cut(s)	53, 237
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	82, 503
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	3 cut(s)	119, 358, 624
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HinfI	GANTC	3 cut(s)	323, 440, 506
HpaII	CCGG	2 cut(s)	82, 503
HphI	GGTGA	3 cut(s)	226, 275, 450
Hpy188I	TCNGA	3 cut(s)	44, 490, 522
Hpy188III	TCNNGA	2 cut(s)	82, 320
HpyAV	CCTTC	2 cut(s)	290, 556
HpyCH4III	ACNGT	1 cut(s)	530
HpyCH4V	TGCA	3 cut(s)	37, 484, 586
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	2 cut(s)	371, 497
Hsp92II	CATG	3 cut(s)	119, 358, 624
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	3 cut(s)	39, 247, 265
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	3 cut(s)	357, 481, 526
MabI	ACCWGGT	1 cut(s)	226
MalI	GATC	3 cut(s)	41, 249, 267
MboI	GATC	3 cut(s)	39, 247, 265
MboII	GAAGA	3 cut(s)	97, 313, 574
MhlI	GDGCHC	1 cut(s)	458
MluCI	AATT	3 cut(s)	307, 362, 396
MmeI	TCCRAC	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	81
MseI	TTAA	3 cut(s)	279, 450, 605
MslI	CAYNNNNRTG	2 cut(s)	120, 619
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	2 cut(s)	82, 503
MspR9I	CCNGG	3 cut(s)	228, 462, 503
MvaI	CCWGG	2 cut(s)	228, 462
MwoI	GCNNNNNNNGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	503
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	3 cut(s)	39, 247, 265
NlaIII	CATG	3 cut(s)	119, 358, 624
NlaIV	GGNNCC	2 cut(s)	175, 630
PfeI	GAWTC	3 cut(s)	323, 440, 506
PkrI	GCNGC	2 cut(s)	54, 238
Psp6I	CCWGG	2 cut(s)	226, 460
PspGI	CCWGG	2 cut(s)	226, 460
PspN4I	GGNNCC	2 cut(s)	175, 630
PspPI	GGNCC	2 cut(s)	79, 611
PstI	CTGCAG	1 cut(s)	588
RseI	CAYNNNNRTG	2 cut(s)	120, 619
SaqAI	TTAA	3 cut(s)	279, 450, 605
SatI	GCNGC	2 cut(s)	53, 237
Sau3AI	GATC	3 cut(s)	39, 247, 265
Sau96I	GGNCC	2 cut(s)	79, 611
ScrFI	CCNGG	3 cut(s)	228, 462, 503
SduI	GDGCHC	1 cut(s)	458
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	3 cut(s)	357, 481, 526
SfcI	CTRYAG	1 cut(s)	584
SinI	GGWCC	2 cut(s)	79, 611
SmiMI	CAYNNNNRTG	2 cut(s)	120, 619
Sse9I	AATT	3 cut(s)	307, 362, 396
SsiI	CCGC	4 cut(s)	53, 92, 139, 533
StyD4I	CCNGG	3 cut(s)	226, 460, 501
StyI	CCWWGG	2 cut(s)	354, 510
TaaI	ACNGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	321
TasI	AATT	3 cut(s)	307, 362, 396
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	323, 440, 506
Tru1I	TTAA	3 cut(s)	279, 450, 605
Tru9I	TTAA	3 cut(s)	279, 450, 605
TscAI	CASTG	2 cut(s)	318, 535
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	4 cut(s)	104, 138, 320, 575
TspRI	CASTG	2 cut(s)	318, 535
VpaK11BI	GGWCC	2 cut(s)	79, 611
XapI	RAATTY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.