RchiOBHm_Chr6g0289031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001406
Physical Location & Seq
Forward (+)
52222084 .. 52225471
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25930

Sequence Viewer

Length: 273 bp
ATGTGTTGCTTGGTTGCTAGAACGACTTGTCCAAGAAAGTGTTTTGTAAACCAACAGTTTGAACCCACAAGGCCTTGCGATTTCGGGTTGATGAGTTTTCGGGATGTCATTCGTGACATATCGATTTCTCATTGGCTCGGGGTCGCGGCGCTGTGGGACCCCTCTCTCGGGTCACCACAACTTACAAATCAAAACACAAAGTATATATATGTGATTCCCATCTTTCTCTCCTTGAGTAACCCTAAAACCCAAAGACCGGTCTTTTTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.34

Weight (kDa)

8.73

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 1 cut(s) 146
AfiI CCNNNNNNNGG 3 cut(s) 167, 168, 256
AgeI ACCGGT 1 cut(s) 256
AgsI TTSAA 1 cut(s) 62
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
Ama87I CYCGRG 2 cut(s) 137, 167
AoxI GGCC 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 256
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 165
AvaI CYCGRG 2 cut(s) 137, 167
AvaII GGWCC 1 cut(s) 157
BccI CCATC 1 cut(s) 227
BfaI CTAG 1 cut(s) 18
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme18I GGWCC 1 cut(s) 157
BmeT110I CYCGRG 2 cut(s) 137, 167
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 2 cut(s) 158, 159
BpuEI CTTGAG 1 cut(s) 253
Bsa29I ATCGAT 1 cut(s) 122
BsaBI GATNNNNATC 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 168, 256
Bse118I RCCGGY 1 cut(s) 256
Bse8I GATNNNNATC 1 cut(s) 218
BseCI ATCGAT 1 cut(s) 122
BseGI GGATG 1 cut(s) 109
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 167, 168, 256
Bsh1236I CGCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 73
BshTI ACCGGT 1 cut(s) 256
BshVI ATCGAT 1 cut(s) 122
BsiHKCI CYCGRG 2 cut(s) 137, 167
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 3 cut(s) 167, 168, 256
BsmFI GGGAC 1 cut(s) 170
BsnI GGCC 1 cut(s) 73
BsoBI CYCGRG 2 cut(s) 137, 167
BspACI CCGC 1 cut(s) 146
BspANI GGCC 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 122
BspFNI CGCG 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 158, 159
BsrFI RCCGGY 1 cut(s) 256
BssAI RCCGGY 1 cut(s) 256
Bst4CI ACNGT 1 cut(s) 57
BstEII GGTNACC 1 cut(s) 171
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 146
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstPI GGTNACC 1 cut(s) 171
BstUI CGCG 1 cut(s) 146
Bsu15I ATCGAT 1 cut(s) 122
BsuRI GGCC 1 cut(s) 73
BsuTUI ATCGAT 1 cut(s) 122
BtsCI GGATG 1 cut(s) 109
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 157
ClaI ATCGAT 1 cut(s) 122
CspAI ACCGGT 1 cut(s) 256
CviJI RGCY 2 cut(s) 73, 136
CviKI_1 RGCY 2 cut(s) 73, 136
Eco147I AGGCCT 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 157
Eco88I CYCGRG 2 cut(s) 137, 167
Eco91I GGTNACC 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 157
EcoO65I GGTNACC 1 cut(s) 171
FaiI YATR 5 cut(s) 119, 204, 206, 208, 210
FaqI GGGAC 1 cut(s) 170
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 1 cut(s) 147
FspBI CTAG 1 cut(s) 18
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 257
HhaI GCGC 1 cut(s) 151
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 49
Hpy188III TCNNGA 2 cut(s) 101, 113
Hpy8I GTNNAC 1 cut(s) 49
HpyCH4III ACNGT 1 cut(s) 57
HspAI GCGC 1 cut(s) 149
KflI GGGWCCC 1 cut(s) 157
MaeI CTAG 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 113, 171, 236
MnlI CCTC 1 cut(s) 172
MseI TTAA 1 cut(s) 271
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 146
NlaIV GGNNCC 2 cut(s) 158, 159
NmuCI GTSAC 2 cut(s) 113, 171
PceI AGGCCT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 214
PinAI ACCGGT 1 cut(s) 256
PkrI GCNGC 1 cut(s) 148
PpuMI RGGWCCY 1 cut(s) 157
Psp5II RGGWCCY 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 171
PspN4I GGNNCC 2 cut(s) 158, 159
PspPI GGNCC 1 cut(s) 157
PspPPI RGGWCCY 1 cut(s) 157
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 157
SinI GGWCC 1 cut(s) 157
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
SseBI AGGCCT 1 cut(s) 73
SsiI CCGC 1 cut(s) 146
SspMI CTAG 1 cut(s) 18
StuI AGGCCT 1 cut(s) 73
TaaI ACNGT 1 cut(s) 57
TaqI TCGA 2 cut(s) 122, 267
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TseFI GTSAC 2 cut(s) 113, 171
Tsp45I GTSAC 2 cut(s) 113, 171
VpaK11BI GGWCC 1 cut(s) 157
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.