RLG00000001172

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001406
Physical Location & Seq
Forward (+)
11335507 .. 11336159
653 bp
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UTR
Exon/CDS
Intron
RLM00000001172

Sequence Viewer

Length: 561 bp
ATGGTGTGGGGGGCTGTGGTGGCCCTTCGAAGGAGGATTGGGGTATTGGGGGTTGCAACGACTTCTCCTGGGGGTGGACAGAGGAGTGTGGTTTTGCAGGATGGTTCATCTATGGTGGTAAAGAGTGTAGCCCGTCTCAATAGGGTGAGTGTACCACCTGGTTTTGAGGCCTTACCTGCTCCAAAGGTGACCATGGTTGGATCAATGTTGGCTAAAAGGGGTGAAAGAGGAGAAGTTACCTCCCAATTGAAAAAAGGGCGATTGGGGCTTGATGTTGATTTATGGATTAAGGGCACACCTAGGGCTTCAGTGGATGGTGTGCAATTTGGTGCTCTTAGCTCGGATTCCTTGGGTCATCGGAAGCGCAAGGTGGATGCTTCCACCTTCAATTTTGGTATGAAGACCTCTCCTACAAAGGGTCTGCAGTTTGAGGTAGGGAAGTCTTTATCCCCCACAGATGGTAAGTTAGGGGCTAGGAAGAAACATAAACCAAAGATTCTCTCAGCTACAAAGCGTCGTGCACTGCTCTCTAAGCTTAAGGAGGAGGCTTCTGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

19.71

Weight (kDa)

11.21

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 208
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 4 cut(s) 30, 74, 416, 458
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 2 cut(s) 250, 388
AjnI CCWGG 2 cut(s) 67, 157
AluBI AGCT 3 cut(s) 339, 506, 535
AluI AGCT 3 cut(s) 339, 506, 535
Alw21I GWGCWC 2 cut(s) 334, 523
Alw26I GTCTC 1 cut(s) 140
Alw44I GTGCAC 1 cut(s) 519
AlwI GGATC 1 cut(s) 208
AoxI GGCC 2 cut(s) 21, 168
ApaLI GTGCAC 1 cut(s) 519
AspA2I CCTAGG 1 cut(s) 299
AspLEI GCGC 1 cut(s) 366
AspS9I GGNCC 1 cut(s) 22
AsuHPI GGTGA 3 cut(s) 157, 199, 233
AsuII TTCGAA 1 cut(s) 28
AvrII CCTAGG 1 cut(s) 299
BaeGI GKGCMC 2 cut(s) 296, 523
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 334, 523
BccI CCATC 3 cut(s) 95, 308, 452
BciT130I CCWGG 2 cut(s) 69, 159
BcoDI GTCTC 1 cut(s) 140
BfaI CTAG 2 cut(s) 300, 474
BfmI CTRYAG 1 cut(s) 422
BfrI CTTAAG 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 184
BlnI CCTAGG 1 cut(s) 299
Bme1390I CCNGG 2 cut(s) 69, 159
BmgT120I GGNCC 1 cut(s) 22
BmrFI CCNGG 2 cut(s) 69, 159
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 28
BsaJI CCNNGG 4 cut(s) 68, 192, 299, 348
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 74, 416, 458
BseBI CCWGG 2 cut(s) 69, 159
BseDI CCNNGG 4 cut(s) 68, 192, 299, 348
BseGI GGATG 3 cut(s) 106, 319, 379
BseLI CCNNNNNNNGG 4 cut(s) 30, 74, 416, 458
BseMII CTCAG 1 cut(s) 516
BseRI GAGGAG 3 cut(s) 97, 243, 557
BseSI GKGCMC 2 cut(s) 296, 523
BshFI GGCC 2 cut(s) 23, 170
BsiHKAI GWGCWC 2 cut(s) 334, 523
BslI CCNNNNNNNGG 4 cut(s) 30, 74, 416, 458
BsmAI GTCTC 1 cut(s) 140
BsmBI CGTCTC 1 cut(s) 140
BsnI GGCC 2 cut(s) 23, 170
Bsp119I TTCGAA 1 cut(s) 28
Bsp1286I GDGCHC 3 cut(s) 296, 334, 523
Bsp143I GATC 1 cut(s) 200
Bsp19I CCATGG 1 cut(s) 192
BspANI GGCC 2 cut(s) 23, 170
BspCNI CTCAG 1 cut(s) 515
BspMAI CTGCAG 1 cut(s) 426
BspMI ACCTGC 1 cut(s) 184
BspPI GGATC 1 cut(s) 208
BspT104I TTCGAA 1 cut(s) 28
BspTI CTTAAG 1 cut(s) 536
BssECI CCNNGG 4 cut(s) 68, 192, 299, 348
BssMI GATC 1 cut(s) 200
BssT1I CCWWGG 3 cut(s) 192, 299, 348
Bst2UI CCWGG 2 cut(s) 69, 159
BstAFI CTTAAG 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 335, 502, 531
BstDSI CCRYGG 1 cut(s) 192
BstEII GGTNACC 1 cut(s) 187
BstF5I GGATG 3 cut(s) 106, 319, 379
BstHHI GCGC 1 cut(s) 366
BstKTI GATC 1 cut(s) 203
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 4 cut(s) 20, 176, 265, 532
BstNI CCWGG 2 cut(s) 69, 159
BstPI GGTNACC 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 67, 157
BstSFI CTRYAG 1 cut(s) 422
BstSLI GKGCMC 2 cut(s) 296, 523
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 2 cut(s) 23, 170
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 3 cut(s) 106, 319, 379
BtsI GCAGTG 1 cut(s) 521
BtsIMutI CAGTG 2 cut(s) 315, 521
BveI ACCTGC 1 cut(s) 184
CfoI GCGC 1 cut(s) 366
Cfr13I GGNCC 1 cut(s) 22
CseI GACGC 1 cut(s) 503
CsiI ACCWGGT 1 cut(s) 157
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 3 cut(s) 335, 502, 531
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
Eco130I CCWWGG 3 cut(s) 192, 299, 348
Eco147I AGGCCT 1 cut(s) 170
Eco57I CTGAAG 1 cut(s) 291
Eco91I GGTNACC 1 cut(s) 187
EcoO65I GGTNACC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 67, 157
EcoT14I CCWWGG 3 cut(s) 192, 299, 348
ErhI CCWWGG 3 cut(s) 192, 299, 348
Esp3I CGTCTC 1 cut(s) 140
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 113, 194, 283, 398, 486
FatI CATG 1 cut(s) 192
FokI GGATG 3 cut(s) 113, 326, 386
FspBI CTAG 2 cut(s) 300, 474
GlaI GCGC 1 cut(s) 365
HaeIII GGCC 2 cut(s) 23, 170
HgaI GACGC 1 cut(s) 503
HhaI GCGC 1 cut(s) 366
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 364
HinP1I GCGC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 2 cut(s) 344, 496
HphI GGTGA 3 cut(s) 157, 199, 233
Hpy166II GTNNAC 3 cut(s) 77, 152, 521
Hpy188I TCNGA 2 cut(s) 343, 360
Hpy8I GTNNAC 3 cut(s) 77, 152, 521
Hpy99I CGWCG 1 cut(s) 519
HpyAV CCTTC 3 cut(s) 24, 35, 394
HpyCH4V TGCA 5 cut(s) 56, 97, 322, 424, 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 176, 265, 532
HpyF3I CTNAG 3 cut(s) 335, 502, 531
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 364
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 2 cut(s) 184, 559
LpnPI CCDG 6 cut(s) 54, 81, 83, 144, 171, 189
LweI GCATC 1 cut(s) 364
MabI ACCWGGT 1 cut(s) 157
MaeI CTAG 2 cut(s) 300, 474
MaeIII GTNAC 2 cut(s) 187, 235
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MboII GAAGA 2 cut(s) 412, 490
MfeI CAATTG 1 cut(s) 245
MhlI GDGCHC 3 cut(s) 296, 334, 523
MluCI AATT 3 cut(s) 245, 323, 388
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 9 cut(s) 27, 75, 160, 221, 250, 415, 424, 535, 538
MseI TTAA 2 cut(s) 288, 537
MspCI CTTAAG 1 cut(s) 536
MspR9I CCNGG 2 cut(s) 69, 159
MunI CAATTG 1 cut(s) 245
MvaI CCWGG 2 cut(s) 69, 159
MwoI GCNNNNNNNGC 4 cut(s) 20, 176, 265, 532
NcoI CCATGG 1 cut(s) 192
NdeII GATC 1 cut(s) 200
NlaIII CATG 1 cut(s) 196
NmuCI GTSAC 1 cut(s) 187
NspV TTCGAA 1 cut(s) 28
PceI AGGCCT 1 cut(s) 170
PfeI GAWTC 2 cut(s) 344, 496
Psp6I CCWGG 2 cut(s) 67, 157
PspEI GGTNACC 1 cut(s) 187
PspGI CCWGG 2 cut(s) 67, 157
PspPI GGNCC 1 cut(s) 22
PstI CTGCAG 1 cut(s) 426
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 288, 537
Sau3AI GATC 1 cut(s) 200
Sau96I GGNCC 1 cut(s) 22
ScrFI CCNGG 2 cut(s) 69, 159
SduI GDGCHC 3 cut(s) 296, 334, 523
SexAI ACCWGGT 1 cut(s) 157
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 3 cut(s) 245, 323, 388
SseBI AGGCCT 1 cut(s) 170
SspMI CTAG 2 cut(s) 300, 474
StuI AGGCCT 1 cut(s) 170
StyD4I CCNGG 2 cut(s) 67, 157
StyI CCWWGG 3 cut(s) 192, 299, 348
TaqI TCGA 1 cut(s) 28
TasI AATT 3 cut(s) 245, 323, 388
TfiI GAWTC 2 cut(s) 344, 496
Tru1I TTAA 2 cut(s) 288, 537
Tru9I TTAA 2 cut(s) 288, 537
TscAI CASTG 2 cut(s) 315, 528
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 2 cut(s) 96, 413
TspRI CASTG 2 cut(s) 315, 528
Vha464I CTTAAG 1 cut(s) 536
VneI GTGCAC 1 cut(s) 519
XmaJI CCTAGG 1 cut(s) 299
XspI CTAG 2 cut(s) 300, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.