Rh5BG373200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001406
Physical Location & Seq
Reverse (-)
58699400 .. 58699915
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG373200.1

Sequence Viewer

Length: 516 bp
ATGGGAGTACCACCGGGTTTTGAAGCTTTACTGGGATCTAAGGGGGTGGGTGACCATCCTGGGATTGGGCCATTAATGTTGGAAGGGAAGATGGATTCTCGGCCGCTGGTGTTGGAGGAGAGTGTTGAAGAGGTACAGGTTATGGTTAGGTCAATCCTTGGGAAAAAGGGTGGTGATGGTGAAGTTACATCTCCATTGAAGAAAGGGAGGTTGTGTTCTGGATCTGGTGTTGATCGAGGGCTTAGTGACTCATCTAGAGTTGTTGTGGGAGGTGTGCCATTGGCTCCTGGTAGTCCAGAGTCCTTAGGTCATTGGAAGCATAGGATATCTGTTTCCACTTTCAGTTTTGGGATGGAGGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCTTGCTATTGGTAAGGTTGGGGATGTGAAGAAACATAAACGAAAGATTATCTCAGCTGCAAAGCGTTATGCACTGCTCTCTCGGCTTGAGAAGGAGGCCCCTGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

17.85

Weight (kDa)

9.64

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 43, 229
AcoI YGGCCR 1 cut(s) 101
AfaI GTAC 2 cut(s) 9, 135
AfiI CCNNNNNNNGG 2 cut(s) 65, 371
AgsI TTSAA 3 cut(s) 23, 128, 199
AjnI CCWGG 2 cut(s) 58, 286
AloI GAACNNNNNNTCC 2 cut(s) 199, 231
AluBI AGCT 2 cut(s) 26, 461
AluI AGCT 2 cut(s) 26, 461
AlwI GGATC 2 cut(s) 43, 229
AoxI GGCC 3 cut(s) 68, 101, 501
ApeKI GCWGC 1 cut(s) 461
AseI ATTAAT 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 68, 502
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 3 cut(s) 62, 185, 191
AxyI CCTNAGG 1 cut(s) 304
BanII GRGCYC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 390
BbvI GCAGC 1 cut(s) 448
BccI CCATC 4 cut(s) 63, 85, 170, 346
BciT130I CCWGG 2 cut(s) 60, 288
BcnI CCSGG 1 cut(s) 15
BfaI CTAG 1 cut(s) 255
BisI GCNGC 2 cut(s) 104, 462
BlsI GCNGC 2 cut(s) 105, 463
Bme1390I CCNGG 3 cut(s) 15, 60, 288
BmgT120I GGNCC 2 cut(s) 68, 502
BmiI GGNNCC 3 cut(s) 285, 361, 504
BmrFI CCNGG 3 cut(s) 15, 60, 288
BmrI ACTGGG 1 cut(s) 41
BmuI ACTGGG 1 cut(s) 41
BpiI GAAGAC 1 cut(s) 390
BpuEI CTTGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 59, 157
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 371
Bse1I ACTGG 1 cut(s) 36
Bse21I CCTNAGG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 60, 288
BseDI CCNNGG 2 cut(s) 59, 157
BseGI GGATG 3 cut(s) 55, 357, 433
BseLI CCNNNNNNNGG 2 cut(s) 65, 371
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 1 cut(s) 36
BseRI GAGGAG 1 cut(s) 131
BseX3I CGGCCG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 104
BshFI GGCC 3 cut(s) 70, 103, 503
BsiEI CGRYCG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 2 cut(s) 65, 371
BsnI GGCC 3 cut(s) 70, 103, 503
Bsp1286I GDGCHC 1 cut(s) 362
Bsp143I GATC 3 cut(s) 35, 221, 232
BspACI CCGC 1 cut(s) 104
BspANI GGCC 3 cut(s) 70, 103, 503
BspCNI CTCAG 1 cut(s) 470
BspLI GGNNCC 3 cut(s) 285, 361, 504
BspPI GGATC 2 cut(s) 43, 229
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 2 cut(s) 59, 157
BssMI GATC 3 cut(s) 35, 221, 232
BssT1I CCWWGG 1 cut(s) 157
Bst2UI CCWGG 2 cut(s) 60, 288
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 377
BstDEI CTNAG 4 cut(s) 39, 242, 304, 457
BstEII GGTNACC 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 369
BstF5I GGATG 3 cut(s) 55, 357, 433
BstKTI GATC 3 cut(s) 38, 224, 235
BstMBI GATC 3 cut(s) 35, 221, 232
BstMCI CGRYCG 1 cut(s) 104
BstMWI GCNNNNNNNGC 1 cut(s) 487
BstNI CCWGG 2 cut(s) 60, 288
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 3 cut(s) 13, 58, 286
BstV1I GCAGC 1 cut(s) 448
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 2 cut(s) 35, 221
BstYI RGATCY 2 cut(s) 35, 221
BstZI CGGCCG 1 cut(s) 101
Bsu36I CCTNAGG 1 cut(s) 304
BsuRI GGCC 3 cut(s) 70, 103, 503
BtsCI GGATG 3 cut(s) 55, 357, 433
BtsI GCAGTG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 476
Cac8I GCNNGC 1 cut(s) 377
Cfr13I GGNCC 2 cut(s) 68, 502
Csp6I GTAC 2 cut(s) 8, 134
CviQI GTAC 2 cut(s) 8, 134
DdeI CTNAG 4 cut(s) 39, 242, 304, 457
DpnI GATC 3 cut(s) 37, 223, 234
DpnII GATC 3 cut(s) 35, 221, 232
EaeI YGGCCR 1 cut(s) 101
EagI CGGCCG 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EclXI CGGCCG 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 362
Eco32I GATATC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 101
Eco81I CCTNAGG 1 cut(s) 304
Eco91I GGTNACC 1 cut(s) 50
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 502
EcoO65I GGTNACC 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 58, 286
EcoRV GATATC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 157
FaiI YATR 4 cut(s) 143, 321, 441, 474
Fnu4HI GCNGC 2 cut(s) 104, 462
FokI GGATG 3 cut(s) 42, 364, 440
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 2 cut(s) 104, 462
FspBI CTAG 1 cut(s) 255
GluI GCNGC 2 cut(s) 104, 462
HaeIII GGCC 3 cut(s) 70, 103, 503
HapII CCGG 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 95, 248, 299
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 62, 185, 191
Hpy188III TCNNGA 3 cut(s) 219, 255, 296
HpyAV CCTTC 2 cut(s) 77, 490
HpyCH4V TGCA 3 cut(s) 379, 464, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 487
HpyF3I CTNAG 4 cut(s) 39, 242, 304, 457
Kzo9I GATC 3 cut(s) 35, 221, 232
LmnI GCTCC 3 cut(s) 289, 365, 514
Lsp1109I GCAGC 1 cut(s) 448
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 3 cut(s) 50, 184, 245
MalI GATC 3 cut(s) 37, 223, 234
MboI GATC 3 cut(s) 35, 221, 232
MboII GAAGA 5 cut(s) 100, 140, 211, 390, 445
MflI RGATCY 2 cut(s) 35, 221
MhlI GDGCHC 1 cut(s) 362
MlyI GAGTC 2 cut(s) 242, 308
MmeI TCCRAC 2 cut(s) 60, 93
MnlI CCTC 9 cut(s) 109, 124, 201, 230, 263, 349, 379, 412, 493
MseI TTAA 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 106, 461
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 15, 60, 288
MvaI CCWGG 2 cut(s) 60, 288
MwoI GCNNNNNNNGC 1 cut(s) 487
NciI CCSGG 1 cut(s) 15
NdeII GATC 3 cut(s) 35, 221, 232
NlaIV GGNNCC 3 cut(s) 285, 361, 504
NmeAIII GCCGAG 2 cut(s) 79, 466
NmuCI GTSAC 2 cut(s) 50, 245
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 105, 463
PleI GAGTC 2 cut(s) 242, 307
PpsI GAGTC 2 cut(s) 242, 307
PshBI ATTAAT 1 cut(s) 74
Psp6I CCWGG 2 cut(s) 58, 286
PspEI GGTNACC 1 cut(s) 50
PspGI CCWGG 2 cut(s) 58, 286
PspN4I GGNNCC 3 cut(s) 285, 361, 504
PspPI GGNCC 2 cut(s) 68, 502
PsuI RGATCY 2 cut(s) 35, 221
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 2 cut(s) 9, 135
RsaNI GTAC 2 cut(s) 8, 134
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 104, 462
Sau3AI GATC 3 cut(s) 35, 221, 232
Sau96I GGNCC 2 cut(s) 68, 502
SchI GAGTC 2 cut(s) 242, 308
ScrFI CCNGG 3 cut(s) 15, 60, 288
SduI GDGCHC 1 cut(s) 362
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
SsiI CCGC 1 cut(s) 104
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 13, 58, 286
StyI CCWWGG 1 cut(s) 157
TaqI TCGA 1 cut(s) 235
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 1 cut(s) 483
TseFI GTSAC 2 cut(s) 50, 245
TseI GCWGC 1 cut(s) 461
Tsp45I GTSAC 2 cut(s) 50, 245
TspRI CASTG 1 cut(s) 483
VspI ATTAAT 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.