Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

47269241 .. 47270460

Gene Structure 1220 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034655

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGTCGGTGTTGAGGATGTGACGTTGAAGCTTGCTGCAGCCCTAGCTATTGGGGGAGACGAGTTCCAAAGTGAGGATCCTATGGTGGACTCAACGGATCCAACCTACCATTGGTTGGTGGCCGTCTGGTCTCTGTGGAGCCAACGAAGGCAGCGGCGCACTGCTTTATGGCGCAAATTGGGCAGATTATGGATGTGCCGCTTAACCGGTTACCGATCTGGGTGCAAATCAGAGGGTTGTCGCCGCCTACACTTCAAGACTTGGGCTCGGAAGATTGCAGGGTGTCTAGGTCGGGTTGTTCATGTGGATGAAAAGAGGTTGAAGTGGTATGAGGAAGTGAAGGTGTTGGTGTTGGTGGTGGTGAGTCTCGAGCGGCCCCTTCCAATGCACTTCAGGTATTCTTTTTCCTATTCTTTTGCTAAAGAGATTGATTTGGATTACCTGAATGTGCGAGAGAGTGTAGCCCATCCCAGTAGGGTGAGTGTGCCGCCGGGTTTTGCTGCCTTACCCAGTCCTAAAGAGGTTAGTGATCACTCTGGGGTTGGGCCTCTCTTGTTGGAAGGGAAGATGAGTTCACTACCTCTCGGATCAAAGGACAGTGTTGATGAGGCCCAGAACATGGTTGGATCGACGCTGGGCAAAAGGGATGGAGTAGGAGAAGTTACGTCCCCATTGAAAAAAAGGCGTTTGGGGCCTAGTGTTGATTCAGGGATTAAAGGCTCACCTGGGGCTTCAGTGGGTGGTGTGCATTCTGATAATCATAGCCCGGATTCCTCGGGTCATCGGAAGCGCAGGATGGATGCTTCCACCTTCAGTTTTGGTATGAAGACCTCTCCAACAAAGGGTCTGCAATTTGAGGTAGGGAAGTCTTCATCCCCCACGGATGGTAAGTCAGGGGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

33.0

Weight (kDa)

9.6

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	115, 619
AccBSI	CCGCTC	1 cut(s)	373
AciI	CCGC	5 cut(s)	154, 199, 244, 373, 488
AclWI	GGATC	6 cut(s)	71, 84, 92, 105, 595, 634
AcoI	YGGCCR	1 cut(s)	120
AcuI	CTGAAG	3 cut(s)	376, 717, 796
AfiI	CCNNNNNNNGG	6 cut(s)	73, 111, 115, 619, 842, 884
AgeI	ACCGGT	1 cut(s)	206
AgsI	TTSAA	4 cut(s)	28, 256, 322, 676
AjnI	CCWGG	1 cut(s)	724
AloI	GAACNNNNNNTCC	2 cut(s)	556, 588
AluBI	AGCT	2 cut(s)	31, 47
AluI	AGCT	2 cut(s)	31, 47
Alw26I	GTCTC	3 cut(s)	51, 135, 371
AlwI	GGATC	6 cut(s)	71, 84, 92, 105, 595, 634
Ama87I	CYCGRG	2 cut(s)	368, 775
AoxI	GGCC	5 cut(s)	120, 374, 545, 609, 692
ApeKI	GCWGC	4 cut(s)	35, 38, 151, 500
AsiGI	ACCGGT	1 cut(s)	206
AspLEI	GCGC	3 cut(s)	159, 174, 792
AspS9I	GGNCC	4 cut(s)	375, 545, 610, 692
AsuC2I	CCSGG	2 cut(s)	492, 767
AsuHPI	GGTGA	3 cut(s)	373, 490, 714
AvaI	CYCGRG	2 cut(s)	368, 775
BamHI	GGATCC	2 cut(s)	76, 97
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	2 cut(s)	833, 861
BbvI	GCAGC	4 cut(s)	22, 50, 163, 487
BccI	CCATC	4 cut(s)	474, 641, 790, 878
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	726
BclI	TGATCA	1 cut(s)	529
BcnI	CCSGG	2 cut(s)	492, 767
BcoDI	GTCTC	3 cut(s)	51, 135, 371
BfaI	CTAG	3 cut(s)	44, 287, 696
BfmI	CTRYAG	1 cut(s)	36
BisI	GCNGC	9 cut(s)	36, 39, 152, 155, 199, 244, 374, 488, 501
BlsI	GCNGC	9 cut(s)	37, 40, 153, 156, 200, 245, 375, 489, 502
Bme1390I	CCNGG	3 cut(s)	492, 726, 767
BmeT110I	CYCGRG	2 cut(s)	368, 775
BmgT120I	GGNCC	4 cut(s)	375, 545, 610, 692
BmiI	GGNNCC	5 cut(s)	78, 99, 140, 377, 693
BmrFI	CCNGG	3 cut(s)	492, 726, 767
BmrI	ACTGGG	2 cut(s)	465, 504
BmsI	GCATC	1 cut(s)	790
BmuI	ACTGGG	2 cut(s)	465, 504
BpiI	GAAGAC	2 cut(s)	833, 861
BpuMI	CCSGG	2 cut(s)	492, 767
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	725, 774, 879
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 111, 115, 619, 842, 884
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	471, 510
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	3 cut(s)	725, 774, 879
BseGI	GGATG	9 cut(s)	22, 198, 313, 466, 652, 801, 805, 872, 889
BseLI	CCNNNNNNNGG	6 cut(s)	73, 111, 115, 619, 842, 884
BseNI	ACTGG	2 cut(s)	471, 510
BseXI	GCAGC	4 cut(s)	22, 50, 163, 487
BseYI	CCCAGC	1 cut(s)	634
BshFI	GGCC	5 cut(s)	122, 376, 547, 611, 694
BshTI	ACCGGT	1 cut(s)	206
BsiHKCI	CYCGRG	2 cut(s)	368, 775
BsiSI	CCGG	3 cut(s)	207, 491, 767
BslFI	GGGAC	1 cut(s)	652
BslI	CCNNNNNNNGG	6 cut(s)	73, 111, 115, 619, 842, 884
BsmAI	GTCTC	3 cut(s)	51, 135, 371
BsmBI	CGTCTC	1 cut(s)	51
BsmFI	GGGAC	1 cut(s)	652
BsmI	GAATGC	1 cut(s)	748
BsnI	GGCC	5 cut(s)	122, 376, 547, 611, 694
Bso31I	GGTCTC	1 cut(s)	135
BsoBI	CYCGRG	2 cut(s)	368, 775
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp143I	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
BspACI	CCGC	5 cut(s)	154, 199, 244, 373, 488
BspANI	GGCC	5 cut(s)	122, 376, 547, 611, 694
BspLI	GGNNCC	5 cut(s)	78, 99, 140, 377, 693
BspMAI	CTGCAG	1 cut(s)	40
BspPI	GGATC	6 cut(s)	71, 84, 92, 105, 595, 634
BspTNI	GGTCTC	1 cut(s)	135
BsrBI	CCGCTC	1 cut(s)	373
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	471, 510
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	3 cut(s)	725, 774, 879
BssMI	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	599
BstC8I	GCNNGC	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	879
BstEII	GGTNACC	1 cut(s)	209
BstF5I	GGATG	9 cut(s)	22, 198, 313, 466, 652, 801, 805, 872, 889
BstHHI	GCGC	3 cut(s)	159, 174, 792
BstKTI	GATC	6 cut(s)	79, 100, 218, 532, 590, 629
BstMAI	GTCTC	3 cut(s)	51, 135, 371
BstMBI	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 180, 691
BstNI	CCWGG	1 cut(s)	726
BstPI	GGTNACC	1 cut(s)	209
BstSCI	CCNGG	3 cut(s)	490, 724, 765
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	4 cut(s)	22, 50, 163, 487
BstV2I	GAAGAC	2 cut(s)	833, 861
BstX2I	RGATCY	2 cut(s)	76, 97
BstYI	RGATCY	2 cut(s)	76, 97
BsuRI	GGCC	5 cut(s)	122, 376, 547, 611, 694
BtgI	CCRYGG	1 cut(s)	879
BtsCI	GGATG	9 cut(s)	22, 198, 313, 466, 652, 801, 805, 872, 889
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	3 cut(s)	159, 604, 741
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	3 cut(s)	159, 174, 792
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	375, 545, 610, 692
CseI	GACGC	1 cut(s)	640
CspAI	ACCGGT	1 cut(s)	206
CviAII	CATG	2 cut(s)	302, 619
DpnI	GATC	6 cut(s)	78, 99, 217, 531, 589, 628
DpnII	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
EaeI	YGGCCR	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	135
Eco57I	CTGAAG	3 cut(s)	376, 717, 796
Eco88I	CYCGRG	2 cut(s)	368, 775
Eco91I	GGTNACC	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	692
EcoO65I	GGTNACC	1 cut(s)	209
EcoRII	CCWGG	1 cut(s)	724
EcoT38I	GRGCYC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	51
FaeI	CATG	2 cut(s)	305, 622
FaiI	YATR	8 cut(s)	83, 169, 190, 303, 330, 620, 762, 824
FaqI	GGGAC	1 cut(s)	652
FatI	CATG	2 cut(s)	301, 618
FbaI	TGATCA	1 cut(s)	529
Fnu4HI	GCNGC	9 cut(s)	36, 39, 152, 155, 199, 244, 374, 488, 501
FokI	GGATG	9 cut(s)	29, 205, 320, 453, 659, 808, 812, 859, 896
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	9 cut(s)	36, 39, 152, 155, 199, 244, 374, 488, 501
FspBI	CTAG	3 cut(s)	44, 287, 696
GlaI	GCGC	3 cut(s)	158, 173, 791
GluI	GCNGC	9 cut(s)	36, 39, 152, 155, 199, 244, 374, 488, 501
GsaI	CCCAGC	1 cut(s)	638
HaeIII	GGCC	5 cut(s)	122, 376, 547, 611, 694
HapII	CCGG	3 cut(s)	207, 491, 767
HgaI	GACGC	1 cut(s)	640
HhaI	GCGC	3 cut(s)	159, 174, 792
Hin1II	CATG	2 cut(s)	305, 622
Hin6I	GCGC	3 cut(s)	157, 172, 790
HinP1I	GCGC	3 cut(s)	157, 172, 790
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	4 cut(s)	89, 364, 704, 770
HpaII	CCGG	3 cut(s)	207, 491, 767
HphI	GGTGA	3 cut(s)	373, 490, 714
Hpy166II	GTNNAC	2 cut(s)	88, 575
Hpy188I	TCNGA	5 cut(s)	232, 270, 587, 754, 786
Hpy188III	TCNNGA	2 cut(s)	256, 368
Hpy8I	GTNNAC	2 cut(s)	88, 575
Hpy99I	CGWCG	1 cut(s)	634
HpyAV	CCTTC	5 cut(s)	141, 334, 389, 554, 820
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	2 cut(s)	23, 665
HpyCH4V	TGCA	6 cut(s)	38, 225, 278, 388, 748, 850
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 180, 691
HpySE526I	ACGT	2 cut(s)	23, 665
Hsp92II	CATG	2 cut(s)	305, 622
HspAI	GCGC	3 cut(s)	157, 172, 790
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
LmnI	GCTCC	1 cut(s)	138
Lsp1109I	GCAGC	4 cut(s)	22, 50, 163, 487
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	3 cut(s)	44, 287, 696
MaeII	ACGT	2 cut(s)	23, 665
MaeIII	GTNAC	3 cut(s)	19, 209, 661
MalI	GATC	6 cut(s)	78, 99, 217, 531, 589, 628
MbiI	CCGCTC	1 cut(s)	373
MboI	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
MboII	GAAGA	4 cut(s)	283, 577, 838, 861
MflI	RGATCY	2 cut(s)	76, 97
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	176, 851
MlyI	GAGTC	2 cut(s)	83, 373
MmeI	TCCRAC	4 cut(s)	125, 537, 604, 860
MseI	TTAA	2 cut(s)	203, 714
MslI	CAYNNNNRTG	1 cut(s)	306
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	3 cut(s)	207, 491, 767
MspR9I	CCNGG	3 cut(s)	492, 726, 767
Mva1269I	GAATGC	1 cut(s)	748
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	3 cut(s)	44, 180, 691
NciI	CCSGG	2 cut(s)	492, 767
NdeII	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
NlaIII	CATG	2 cut(s)	305, 622
NlaIV	GGNNCC	5 cut(s)	78, 99, 140, 377, 693
NmuCI	GTSAC	1 cut(s)	19
PaeR7I	CTCGAG	1 cut(s)	368
PctI	GAATGC	1 cut(s)	748
PfeI	GAWTC	2 cut(s)	704, 770
PflMI	CCANNNNNTGG	2 cut(s)	115, 619
PinAI	ACCGGT	1 cut(s)	206
PkrI	GCNGC	9 cut(s)	37, 40, 153, 156, 200, 245, 375, 489, 502
PleI	GAGTC	2 cut(s)	83, 372
PpsI	GAGTC	2 cut(s)	83, 372
Psp6I	CCWGG	1 cut(s)	724
PspEI	GGTNACC	1 cut(s)	209
PspFI	CCCAGC	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	724
PspN4I	GGNNCC	5 cut(s)	78, 99, 140, 377, 693
PspPI	GGNCC	4 cut(s)	375, 545, 610, 692
PstI	CTGCAG	1 cut(s)	40
PsuI	RGATCY	2 cut(s)	76, 97
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	203, 714
SatI	GCNGC	9 cut(s)	36, 39, 152, 155, 199, 244, 374, 488, 501
Sau3AI	GATC	6 cut(s)	76, 97, 215, 529, 587, 626
Sau96I	GGNCC	4 cut(s)	375, 545, 610, 692
SchI	GAGTC	2 cut(s)	83, 373
ScrFI	CCNGG	3 cut(s)	492, 726, 767
SduI	GDGCHC	1 cut(s)	268
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	1 cut(s)	36
Sfr274I	CTCGAG	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	176, 851
SsiI	CCGC	5 cut(s)	154, 199, 244, 373, 488
SspMI	CTAG	3 cut(s)	44, 287, 696
StyD4I	CCNGG	3 cut(s)	490, 724, 765
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	2 cut(s)	26, 668
TaqI	TCGA	2 cut(s)	369, 629
TasI	AATT	2 cut(s)	176, 851
TauI	GCSGC	5 cut(s)	157, 201, 246, 376, 490
TfiI	GAWTC	2 cut(s)	704, 770
Tru1I	TTAA	2 cut(s)	203, 714
Tru9I	TTAA	2 cut(s)	203, 714
TscAI	CASTG	3 cut(s)	166, 604, 741
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	4 cut(s)	35, 38, 151, 500
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	4 cut(s)	290, 324, 839, 861
TspGWI	ACGGA	2 cut(s)	110, 896
TspRI	CASTG	3 cut(s)	166, 604, 741
Van91I	CCANNNNNTGG	2 cut(s)	115, 619
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 620
XhoI	CTCGAG	1 cut(s)	368
XspI	CTAG	3 cut(s)	44, 287, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.