Prupe.3G281700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001406
Physical Location & Seq
Forward (+)
25674242 .. 25674764
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G281700.1

Sequence Viewer

Length: 252 bp
ATGGCCAGAGAAATCAAGCTCCAGCGTTTCCTCGTTCCCCTACTTGTTCTGAGCTTCGTTTTGCTAGCTGCTGCCATAGAAGCCCGTCCTCTTTCACATCATTATAAGAATCATCACCACCAGGGCCACCAGCTCCACCACAACCCGAGGGAGGCCGGCCCGAGCCCAGGAGGGGTAGGCCATTACTTCGGTGATGTTCTTGCCCTTTGGGGAGTCAAGAATTCTGGTCAAAGCCCCGGTGAAGGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.12

Weight (kDa)

9.4

Isoelectric Point (pI)

56.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 220
AfiI CCNNNNNNNGG 4 cut(s) 151, 167, 172, 242
AjnI CCWGG 2 cut(s) 120, 166
AluBI AGCT 4 cut(s) 19, 54, 68, 133
AluI AGCT 4 cut(s) 19, 54, 68, 133
Ama87I CYCGRG 2 cut(s) 145, 160
AoxI GGCC 6 cut(s) 3, 124, 153, 157, 178, 244
ApeKI GCWGC 2 cut(s) 68, 71
ApoI RAATTY 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 124, 158
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 3 cut(s) 107, 203, 251
AsuNHI GCTAGC 1 cut(s) 64
AvaI CYCGRG 2 cut(s) 145, 160
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 55, 58
BciT130I CCWGG 2 cut(s) 122, 168
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 65
BisI GCNGC 2 cut(s) 69, 72
BlsI GCNGC 2 cut(s) 70, 73
Bme1390I CCNGG 3 cut(s) 122, 168, 237
BmeT110I CYCGRG 2 cut(s) 145, 160
BmgT120I GGNCC 2 cut(s) 124, 158
BmrFI CCNGG 3 cut(s) 122, 168, 237
BmtI GCTAGC 1 cut(s) 68
BpmI CTGGAG 1 cut(s) 5
BpuMI CCSGG 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 121, 146, 166, 235
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 167, 172, 242
Bse118I RCCGGY 1 cut(s) 155
BseBI CCWGG 2 cut(s) 122, 168
BseDI CCNNGG 4 cut(s) 121, 146, 166, 235
BseLI CCNNNNNNNGG 4 cut(s) 151, 167, 172, 242
BseMII CTCAG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 55, 58
BshFI GGCC 6 cut(s) 5, 126, 155, 159, 180, 246
BsiHKCI CYCGRG 2 cut(s) 145, 160
BsiSI CCGG 2 cut(s) 156, 237
BslI CCNNNNNNNGG 4 cut(s) 151, 167, 172, 242
BsnI GGCC 6 cut(s) 5, 126, 155, 159, 180, 246
BsoBI CYCGRG 2 cut(s) 145, 160
Bsp1286I GDGCHC 1 cut(s) 167
BspANI GGCC 6 cut(s) 5, 126, 155, 159, 180, 246
BspCNI CTCAG 1 cut(s) 42
BspOI GCTAGC 1 cut(s) 68
BsrFI RCCGGY 1 cut(s) 155
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 121, 146, 166, 235
Bst2UI CCWGG 2 cut(s) 122, 168
BstC8I GCNNGC 2 cut(s) 66, 157
BstDEI CTNAG 1 cut(s) 50
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 122, 168
BstSCI CCNGG 3 cut(s) 120, 166, 235
BstV1I GCAGC 2 cut(s) 55, 58
BsuRI GGCC 6 cut(s) 5, 126, 155, 159, 180, 246
Cac8I GCNNGC 2 cut(s) 66, 157
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 2 cut(s) 124, 158
DdeI CTNAG 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 167
Eco88I CYCGRG 2 cut(s) 145, 160
EcoRI GAATTC 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 120, 166
EcoT38I GRGCYC 1 cut(s) 167
FaiI YATR 2 cut(s) 77, 105
Fnu4HI GCNGC 2 cut(s) 69, 72
FriOI GRGCYC 1 cut(s) 167
FseI GGCCGGCC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 69, 72
FspBI CTAG 1 cut(s) 65
GluI GCNGC 2 cut(s) 69, 72
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 6 cut(s) 5, 126, 155, 159, 180, 246
HapII CCGG 2 cut(s) 156, 237
HinfI GANTC 2 cut(s) 109, 213
HpaII CCGG 2 cut(s) 156, 237
HphI GGTGA 3 cut(s) 107, 203, 251
Hpy188I TCNGA 1 cut(s) 51
Hpy188III TCNNGA 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 50
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 24, 138
LpnPI CCDG 9 cut(s) 19, 35, 107, 134, 143, 153, 169, 180, 210
Lsp1109I GCAGC 2 cut(s) 55, 58
MaeI CTAG 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 167
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 220
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 5 cut(s) 41, 99, 141, 145, 164
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 156, 237
MspR9I CCNGG 3 cut(s) 122, 168, 237
MvaI CCWGG 2 cut(s) 122, 168
MwoI GCNNNNNNNGC 1 cut(s) 80
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 237
NgoMIV GCCGGC 1 cut(s) 155
NheI GCTAGC 1 cut(s) 64
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 2 cut(s) 70, 73
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 120, 166
PspGI CCWGG 2 cut(s) 120, 166
PspPI GGNCC 2 cut(s) 124, 158
RigI GGCCGGCC 1 cut(s) 159
SatI GCNGC 2 cut(s) 69, 72
Sau96I GGNCC 2 cut(s) 124, 158
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 3 cut(s) 122, 168, 237
SduI GDGCHC 1 cut(s) 167
SetI ASST 4 cut(s) 21, 56, 70, 135
Sse9I AATT 1 cut(s) 220
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 120, 166, 235
TasI AATT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 109
TseI GCWGC 2 cut(s) 68, 71
XapI RAATTY 1 cut(s) 220
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.