Rh2CG604200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001406
Physical Location & Seq
Forward (+)
77938849 .. 77939869
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG604200.1

Sequence Viewer

Length: 285 bp
ATGGCCGGAGTACTGAAACTGCAGCGTTTTATTGTTCCTGTACTCGTCCTGAGCTTCATCTTGCTATCTCTGGCCATTGAAGCCCGGCCGATGCATGAGCATGGCTCGAAGATTCATCATCATCGTCATCAGTTTCACCACCACAAGGAGGTGCACAACCACAAGTACAATGGTCACAGGAAGGCTGTACCAAGCCCAGGAGGGGCACTTGGTCAAGGCTTTATTGATTTTCTGAACCTTTGGGGAGTCAAGAACAGTGGTCCGAGTCCTGGTGCAGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.44

Weight (kDa)

10.37

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 3, 72, 86
AfaI GTAC 4 cut(s) 12, 42, 167, 189
AfiI CCNNNNNNNGG 6 cut(s) 145, 148, 197, 202, 269, 275
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 196, 268
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw21I GWGCWC 1 cut(s) 156
Alw44I GTGCAC 1 cut(s) 152
AoxI GGCC 4 cut(s) 3, 72, 86, 277
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 260
BaeGI GKGCMC 2 cut(s) 156, 208
BalI TGGCCA 1 cut(s) 74
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 34
BciT130I CCWGG 2 cut(s) 198, 270
BcnI CCSGG 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 23
BlsI GCNGC 1 cut(s) 24
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 3 cut(s) 85, 198, 270
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 3 cut(s) 85, 198, 270
BmsI GCATC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 196
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 148, 197, 202, 269, 275
BseBI CCWGG 2 cut(s) 198, 270
BseDI CCNNGG 1 cut(s) 196
BseLI CCNNNNNNNGG 6 cut(s) 145, 148, 197, 202, 269, 275
BseMII CTCAG 1 cut(s) 41
BseSI GKGCMC 2 cut(s) 156, 208
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 34
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 5, 74, 88, 279
BsiEI CGRYCG 1 cut(s) 89
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 2 cut(s) 6, 85
BslI CCNNNNNNNGG 6 cut(s) 145, 148, 197, 202, 269, 275
BsnI GGCC 4 cut(s) 5, 74, 88, 279
Bsp1286I GDGCHC 2 cut(s) 156, 208
BspANI GGCC 4 cut(s) 5, 74, 88, 279
BspCNI CTCAG 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 196
Bst2UI CCWGG 2 cut(s) 198, 270
Bst4CI ACNGT 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 273
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 2 cut(s) 198, 270
BstSCI CCNGG 3 cut(s) 83, 196, 268
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 2 cut(s) 156, 208
BstV1I GCAGC 1 cut(s) 34
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 4 cut(s) 5, 74, 88, 279
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 4 cut(s) 11, 41, 166, 188
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 95, 101
CviQI GTAC 4 cut(s) 11, 41, 166, 188
DdeI CTNAG 1 cut(s) 50
EaeI YGGCCR 3 cut(s) 3, 72, 86
EagI CGGCCG 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 260
Eco52I CGGCCG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 2 cut(s) 196, 268
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 2 cut(s) 98, 104
FaiI YATR 2 cut(s) 96, 102
FatI CATG 2 cut(s) 94, 100
Fnu4HI GCNGC 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 23
GluI GCNGC 1 cut(s) 23
HaeIII GGCC 4 cut(s) 5, 74, 88, 279
HapII CCGG 2 cut(s) 6, 85
Hin1II CATG 2 cut(s) 98, 104
HinfI GANTC 3 cut(s) 112, 246, 265
HpaII CCGG 2 cut(s) 6, 85
HphI GGTGA 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 234, 264
Hpy188III TCNNGA 2 cut(s) 49, 250
Hpy8I GTNNAC 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 4 cut(s) 22, 94, 154, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 2 cut(s) 98, 104
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 1 cut(s) 121
MhlI GDGCHC 2 cut(s) 156, 208
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 255, 274
MnlI CCTC 2 cut(s) 142, 194
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 96
MscI TGGCCA 1 cut(s) 74
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 2 cut(s) 6, 85
MspR9I CCNGG 3 cut(s) 85, 198, 270
MvaI CCWGG 2 cut(s) 198, 270
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 85
NlaIII CATG 2 cut(s) 98, 104
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 1 cut(s) 24
PleI GAGTC 2 cut(s) 254, 273
PpsI GAGTC 2 cut(s) 254, 273
Psp6I CCWGG 2 cut(s) 196, 268
PspGI CCWGG 2 cut(s) 196, 268
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 24
RsaI GTAC 4 cut(s) 12, 42, 167, 189
RsaNI GTAC 4 cut(s) 11, 41, 166, 188
RseI CAYNNNNRTG 1 cut(s) 99
SatI GCNGC 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 2 cut(s) 255, 274
ScrFI CCNGG 3 cut(s) 85, 198, 270
SduI GDGCHC 2 cut(s) 156, 208
SetI ASST 3 cut(s) 56, 153, 240
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 99
StyD4I CCNGG 3 cut(s) 83, 196, 268
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 1 cut(s) 107
TatI WGTACW 3 cut(s) 10, 40, 165
TfiI GAWTC 1 cut(s) 112
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 1 cut(s) 22
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 46, 104
TspRI CASTG 1 cut(s) 262
VneI GTGCAC 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.