Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011582.1

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

89078 .. 90324

Gene Structure 1247 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011582.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgacttccacaatgaggatccagcggtggagttggcagatccaacctatcactggttggtgggggcgtctggtctctgtggatccgacgaaagcggcgctgcacaggtttatggcccaaattggacagatctggcttgtggctgaccattggttggtgatccatgaacgaccaaataggcgatttctcttccactttgttaatctgaccgataagcaatgggttttggttaaatcactatggtattatcgttcggcaacgttggtttcaggggactatgacggggtgggtgatatcatggaggtgactctgaatcgattgccgatttggaccccgataagaggattgttgcaggcctattccacaccgagttgggcaaggaaggttgctgggtgcttgggtcgggttgttcatgtggatgaaaggagattgaagtggcatgaggaagtgaaggtgttggtggtggtggatctcgtttgtccccttcgtcggcagtttaggggtttgtgcttggtctgtgggttctttgagcatggtgtgggaggttgtggtggtcctccaaaggaagtgtggaatacaggtgtggctgtaacctcatctggaggtggacagcggagtgtggttttgcagggtgattcatcggtggtggtggtggctgttccccttccgagtgggataggagtaccaccgggttttgaagctttactgggatctaagggggtgggtgaccatcctgggattgggccattaatgttggaaaggaagatggattctcggccgctggtgttggaggagagtgttgatgaggtacaagttatggttaggtcaatgcttgggaaaaagggtggtgatggtgaagttacgtctcaattgaagaaagggaggttgtgttctagatctggtgttgatcgagggcttagtgactcatctagagttgttgtgggaggtgtgccattggctcctggtagtccagattccttggatcattggaagcataggatatctgtttccactttcatttttgggatggagggctcccctaccaaaggcttgcagtttgaggtggttccgtcttcctctcctgctattggtaaggttggggatgggaagaaacataaacgaaagattatatcagctgcaaagcgttatgcactgctatctctgcttgagaaggaggcctctgctccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

396

Amino Acids

43.39

Weight (kDa)

9.69

Isoelectric Point (pI)

42.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	154
AciI	CCGC	4 cut(s)	25, 95, 613, 779
AclI	AACGTT	1 cut(s)	260
AclWI	GGATC	9 cut(s)	13, 26, 34, 77, 90, 154, 477, 718, 990
AcoI	YGGCCR	1 cut(s)	776
AcyI	GRCGYC	1 cut(s)	67
AfaI	GTAC	2 cut(s)	684, 810
AfiI	CCNNNNNNNGG	8 cut(s)	15, 53, 154, 341, 489, 740, 1046, 1088
AgsI	TTSAA	3 cut(s)	433, 698, 874
AjnI	CCWGG	2 cut(s)	733, 961
AloI	GAACNNNNNNTCC	2 cut(s)	874, 906
AluBI	AGCT	2 cut(s)	701, 1136
AluI	AGCT	2 cut(s)	701, 1136
Alw26I	GTCTC	2 cut(s)	79, 870
AlwI	GGATC	9 cut(s)	13, 26, 34, 77, 90, 154, 477, 718, 990
AoxI	GGCC	5 cut(s)	114, 354, 743, 776, 1176
ApeKI	GCWGC	2 cut(s)	100, 1136
AseI	ATTAAT	1 cut(s)	749
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	4 cut(s)	115, 330, 554, 743
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	7 cut(s)	169, 302, 316, 644, 737, 860, 866
AvaII	GGWCC	2 cut(s)	330, 554
BamHI	GGATCC	2 cut(s)	18, 82
BanII	GRGCYC	1 cut(s)	1037
BbsI	GAAGAC	1 cut(s)	1065
BbvI	GCAGC	2 cut(s)	87, 1123
BccI	CCATC	5 cut(s)	738, 760, 845, 1021, 1097
BciT130I	CCWGG	2 cut(s)	735, 963
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	2 cut(s)	79, 870
BfaI	CTAG	2 cut(s)	894, 930
BfoI	RGCGCY	1 cut(s)	101
BglII	AGATCT	2 cut(s)	129, 896
BisI	GCNGC	4 cut(s)	96, 101, 779, 1137
BlsI	GCNGC	4 cut(s)	97, 102, 780, 1138
Bme1390I	CCNGG	3 cut(s)	690, 735, 963
Bme18I	GGWCC	2 cut(s)	330, 554
BmgT120I	GGNCC	4 cut(s)	115, 330, 554, 743
BmiI	GGNNCC	6 cut(s)	20, 84, 332, 960, 1036, 1068
BmrFI	CCNGG	3 cut(s)	690, 735, 963
BmrI	ACTGGG	1 cut(s)	716
BmuI	ACTGGG	1 cut(s)	716
BpiI	GAAGAC	1 cut(s)	1065
BpmI	CTGGAG	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	1187
BpuMI	CCSGG	1 cut(s)	690
Bsa29I	ATCGAT	1 cut(s)	316
BsaHI	GRCGYC	1 cut(s)	67
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	2 cut(s)	734, 978
BsaXI	ACNNNNNCTCC	2 cut(s)	874, 904
Bsc4I	CCNNNNNNNGG	8 cut(s)	15, 53, 154, 341, 489, 740, 1046, 1088
Bse1I	ACTGG	2 cut(s)	58, 711
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	735, 963
BseCI	ATCGAT	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	734, 978
BseGI	GGATG	4 cut(s)	424, 730, 1032, 1108
BseLI	CCNNNNNNNGG	8 cut(s)	15, 53, 154, 341, 489, 740, 1046, 1088
BseMI	GCAATG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	58, 711
BseRI	GAGGAG	1 cut(s)	806
BseX3I	CGGCCG	1 cut(s)	776
BseXI	GCAGC	2 cut(s)	87, 1123
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	86
Bsh1285I	CGRYCG	1 cut(s)	779
BshFI	GGCC	5 cut(s)	116, 356, 745, 778, 1178
BshVI	ATCGAT	1 cut(s)	316
BsiEI	CGRYCG	1 cut(s)	779
BsiSI	CCGG	1 cut(s)	689
BslFI	GGGAC	2 cut(s)	287, 465
BslI	CCNNNNNNNGG	8 cut(s)	15, 53, 154, 341, 489, 740, 1046, 1088
BsmAI	GTCTC	2 cut(s)	79, 870
BsmBI	CGTCTC	1 cut(s)	870
BsmFI	GGGAC	2 cut(s)	287, 465
BsnI	GGCC	5 cut(s)	116, 356, 745, 778, 1178
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	1037
BspACI	CCGC	4 cut(s)	25, 95, 613, 779
BspANI	GGCC	5 cut(s)	116, 356, 745, 778, 1178
BspDI	ATCGAT	1 cut(s)	316
BspLI	GGNNCC	6 cut(s)	20, 84, 332, 960, 1036, 1068
BspPI	GGATC	9 cut(s)	13, 26, 34, 77, 90, 154, 477, 718, 990
BspTNI	GGTCTC	1 cut(s)	79
BsrDI	GCAATG	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	58, 711
BssECI	CCNNGG	2 cut(s)	734, 978
BssNI	GRCGYC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	978
Bst2UI	CCWGG	2 cut(s)	735, 963
Bst6I	CTCTTC	1 cut(s)	194
BstACI	GRCGYC	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	354, 1052
BstDEI	CTNAG	2 cut(s)	714, 917
BstEII	GGTNACC	1 cut(s)	725
BstENI	CCTNNNNNAGG	1 cut(s)	1044
BstF5I	GGATG	4 cut(s)	424, 730, 1032, 1108
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	1 cut(s)	100
BstMAI	GTCTC	2 cut(s)	79, 870
BstMCI	CGRYCG	1 cut(s)	779
BstMWI	GCNNNNNNNGC	1 cut(s)	1162
BstNI	CCWGG	2 cut(s)	735, 963
BstPI	GGTNACC	1 cut(s)	725
BstSCI	CCNGG	3 cut(s)	688, 733, 961
BstV1I	GCAGC	2 cut(s)	87, 1123
BstV2I	GAAGAC	1 cut(s)	1065
BstX2I	RGATCY	7 cut(s)	18, 39, 82, 129, 469, 710, 896
BstYI	RGATCY	7 cut(s)	18, 39, 82, 129, 469, 710, 896
BstZI	CGGCCG	1 cut(s)	776
Bsu15I	ATCGAT	1 cut(s)	316
BsuRI	GGCC	5 cut(s)	116, 356, 745, 778, 1178
BsuTUI	ATCGAT	1 cut(s)	316
BtsCI	GGATG	4 cut(s)	424, 730, 1032, 1108
BtsI	GCAGTG	1 cut(s)	1151
BtsIMutI	CAGTG	2 cut(s)	51, 1151
Cac8I	GCNNGC	2 cut(s)	354, 1052
CfoI	GCGC	1 cut(s)	100
Cfr13I	GGNCC	4 cut(s)	115, 330, 554, 743
ClaI	ATCGAT	1 cut(s)	316
CseI	GACGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	683, 809
CviAII	CATG	5 cut(s)	164, 298, 413, 440, 533
CviQI	GTAC	2 cut(s)	683, 809
DdeI	CTNAG	2 cut(s)	714, 917
EaeI	YGGCCR	1 cut(s)	776
EagI	CGGCCG	1 cut(s)	776
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EclXI	CGGCCG	1 cut(s)	776
Eco130I	CCWWGG	1 cut(s)	978
Eco147I	AGGCCT	2 cut(s)	356, 1178
Eco24I	GRGCYC	1 cut(s)	1037
Eco31I	GGTCTC	1 cut(s)	79
Eco32I	GATATC	2 cut(s)	295, 1002
Eco47I	GGWCC	2 cut(s)	330, 554
Eco52I	CGGCCG	1 cut(s)	776
Eco91I	GGTNACC	1 cut(s)	725
EcoNI	CCTNNNNNAGG	1 cut(s)	1044
EcoO65I	GGTNACC	1 cut(s)	725
EcoRII	CCWGG	2 cut(s)	733, 961
EcoRV	GATATC	2 cut(s)	295, 1002
EcoT14I	CCWWGG	1 cut(s)	978
EcoT38I	GRGCYC	1 cut(s)	1037
ErhI	CCWWGG	1 cut(s)	978
Esp3I	CGTCTC	1 cut(s)	870
FaeI	CATG	5 cut(s)	167, 301, 416, 443, 536
FaqI	GGGAC	2 cut(s)	287, 465
FatI	CATG	5 cut(s)	163, 297, 412, 439, 532
Fnu4HI	GCNGC	4 cut(s)	96, 101, 779, 1137
FokI	GGATG	4 cut(s)	431, 717, 1039, 1115
FriOI	GRGCYC	1 cut(s)	1037
Fsp4HI	GCNGC	4 cut(s)	96, 101, 779, 1137
FspBI	CTAG	2 cut(s)	894, 930
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	4 cut(s)	96, 101, 779, 1137
GsaI	CCCAGC	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	621
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	5 cut(s)	116, 356, 745, 778, 1178
HapII	CCGG	1 cut(s)	689
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	167, 301, 416, 443, 536
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HindIII	AAGCTT	1 cut(s)	699
HinfI	GANTC	6 cut(s)	307, 313, 635, 770, 923, 974
HpaII	CCGG	1 cut(s)	689
HphI	GGTGA	7 cut(s)	169, 302, 316, 644, 737, 860, 866
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	4 cut(s)	87, 207, 312, 669
Hpy188III	TCNNGA	4 cut(s)	600, 894, 930, 971
Hpy8I	GTNNAC	1 cut(s)	608
Hpy99I	CGWCG	2 cut(s)	91, 492
HpyAV	CCTTC	5 cut(s)	376, 445, 494, 674, 1165
HpyCH4IV	ACGT	2 cut(s)	260, 863
HpyCH4V	TGCA	6 cut(s)	103, 352, 628, 1054, 1139, 1151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1162
HpyF3I	CTNAG	2 cut(s)	714, 917
HpySE526I	ACGT	2 cut(s)	260, 863
Hsp92I	GRCGYC	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	167, 301, 416, 443, 536
HspAI	GCGC	1 cut(s)	98
LmnI	GCTCC	3 cut(s)	964, 1040, 1189
Lsp1109I	GCAGC	2 cut(s)	87, 1123
MaeI	CTAG	2 cut(s)	894, 930
MaeII	ACGT	2 cut(s)	260, 863
MaeIII	GTNAC	5 cut(s)	304, 589, 725, 859, 920
MboII	GAAGA	5 cut(s)	181, 775, 886, 1065, 1120
MfeI	CAATTG	1 cut(s)	869
MflI	RGATCY	7 cut(s)	18, 39, 82, 129, 469, 710, 896
MhlI	GDGCHC	1 cut(s)	1037
MluCI	AATT	2 cut(s)	120, 869
MlyI	GAGTC	2 cut(s)	301, 917
MmeI	TCCRAC	4 cut(s)	67, 110, 735, 768
MseI	TTAA	3 cut(s)	201, 231, 749
MslI	CAYNNNNRTG	2 cut(s)	302, 417
MspA1I	CMGCKG	4 cut(s)	25, 613, 781, 1136
MspI	CCGG	1 cut(s)	689
MspR9I	CCNGG	3 cut(s)	690, 735, 963
MunI	CAATTG	1 cut(s)	869
MvaI	CCWGG	2 cut(s)	735, 963
MwoI	GCNNNNNNNGC	1 cut(s)	1162
NciI	CCSGG	1 cut(s)	690
NlaIII	CATG	5 cut(s)	167, 301, 416, 443, 536
NlaIV	GGNNCC	6 cut(s)	20, 84, 332, 960, 1036, 1068
NmeAIII	GCCGAG	1 cut(s)	754
NmuCI	GTSAC	3 cut(s)	304, 725, 920
PceI	AGGCCT	2 cut(s)	356, 1178
PfeI	GAWTC	4 cut(s)	313, 635, 770, 974
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	4 cut(s)	97, 102, 780, 1138
PleI	GAGTC	2 cut(s)	301, 917
PpsI	GAGTC	2 cut(s)	301, 917
PshBI	ATTAAT	1 cut(s)	749
Psp1406I	AACGTT	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	733, 961
PspEI	GGTNACC	1 cut(s)	725
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	733, 961
PspN4I	GGNNCC	6 cut(s)	20, 84, 332, 960, 1036, 1068
PspPI	GGNCC	4 cut(s)	115, 330, 554, 743
PsuI	RGATCY	7 cut(s)	18, 39, 82, 129, 469, 710, 896
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	2 cut(s)	684, 810
RsaNI	GTAC	2 cut(s)	683, 809
RseI	CAYNNNNRTG	2 cut(s)	302, 417
SaqAI	TTAA	3 cut(s)	201, 231, 749
SatI	GCNGC	4 cut(s)	96, 101, 779, 1137
Sau96I	GGNCC	4 cut(s)	115, 330, 554, 743
SchI	GAGTC	2 cut(s)	301, 917
ScrFI	CCNGG	3 cut(s)	690, 735, 963
SduI	GDGCHC	1 cut(s)	1037
SinI	GGWCC	2 cut(s)	330, 554
SmiMI	CAYNNNNRTG	2 cut(s)	302, 417
SmlI	CTYRAG	1 cut(s)	1166
SmoI	CTYRAG	1 cut(s)	1166
Sse9I	AATT	2 cut(s)	120, 869
SseBI	AGGCCT	2 cut(s)	356, 1178
SsiI	CCGC	4 cut(s)	25, 95, 613, 779
SspMI	CTAG	2 cut(s)	894, 930
StuI	AGGCCT	2 cut(s)	356, 1178
StyD4I	CCNGG	3 cut(s)	688, 733, 961
StyI	CCWWGG	1 cut(s)	978
TaiI	ACGT	2 cut(s)	263, 866
TaqI	TCGA	2 cut(s)	316, 910
TaqII	GACCGA	1 cut(s)	224
TasI	AATT	2 cut(s)	120, 869
TauI	GCSGC	2 cut(s)	98, 781
TfiI	GAWTC	4 cut(s)	313, 635, 770, 974
Tru1I	TTAA	3 cut(s)	201, 231, 749
Tru9I	TTAA	3 cut(s)	201, 231, 749
TscAI	CASTG	2 cut(s)	58, 1158
TseFI	GTSAC	3 cut(s)	304, 725, 920
TseI	GCWGC	2 cut(s)	100, 1136
Tsp45I	GTSAC	3 cut(s)	304, 725, 920
TspDTI	ATGAA	5 cut(s)	180, 401, 435, 627, 1006
TspGWI	ACGGA	1 cut(s)	1059
TspRI	CASTG	2 cut(s)	58, 1158
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	2 cut(s)	330, 554
VspI	ATTAAT	1 cut(s)	749
XagI	CCTNNNNNAGG	1 cut(s)	1044
XbaI	TCTAGA	2 cut(s)	893, 929
XcmI	CCANNNNNNNNNTGG	3 cut(s)	50, 567, 737
XspI	CTAG	2 cut(s)	894, 930

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.