pycom17g03380

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001406
Physical Location & Seq
Reverse (-)
2236751 .. 2237026
276 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03380.1

Sequence Viewer

Length: 276 bp
ATGGCCAGAGAAATCATTAGCCGCCACCGTTTCGTTGTTGCCCTACTTGTGGTGAGCTTCATTTTGCTCTCTGCCGCAGTCGAAGCCCGTCCTCTTGACGTGCATGGTTCTCCCGTTCATCATCAGATTCATCATCACAGTCACAGCCACCCGGTGCACCACAATCCAAGGAAGGCCGCCGGTCAGAGCGGAGGCGGCGTTGGTAATTACTTTGCCGATGTTCTTTCCCTCTGGGGAATCAAGAATTCTGGTCCAAGCCCCGGCGAAGGCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.78

Weight (kDa)

9.69

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 189
AciI CCGC 5 cut(s) 22, 75, 177, 189, 195
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 244
AdeI CACNNNGTG 1 cut(s) 154
AfiI CCNNNNNNNGG 3 cut(s) 49, 260, 266
AjiI CACGTC 1 cut(s) 100
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
Alw21I GWGCWC 1 cut(s) 159
Alw44I GTGCAC 1 cut(s) 155
AoxI GGCC 3 cut(s) 3, 174, 268
ApaLI GTGCAC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 244
AspS9I GGNCC 1 cut(s) 251
AsuC2I CCSGG 2 cut(s) 152, 261
AsuHPI GGTGA 1 cut(s) 64
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 159
BalI TGGCCA 1 cut(s) 5
Bbv12I GWGCWC 1 cut(s) 159
BcnI CCSGG 2 cut(s) 152, 261
BisI GCNGC 4 cut(s) 22, 75, 177, 196
BlsI GCNGC 4 cut(s) 23, 76, 178, 197
Bme1390I CCNGG 2 cut(s) 152, 261
Bme18I GGWCC 1 cut(s) 251
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 251
BmrFI CCNGG 2 cut(s) 152, 261
BpuMI CCSGG 2 cut(s) 152, 261
BsaJI CCNNGG 2 cut(s) 167, 259
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 260, 266
Bse118I RCCGGY 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 167, 259
BseLI CCNNNNNNNGG 3 cut(s) 49, 260, 266
BseSI GKGCMC 1 cut(s) 159
BshFI GGCC 3 cut(s) 5, 176, 270
BsiHKAI GWGCWC 1 cut(s) 159
BsiSI CCGG 3 cut(s) 152, 180, 261
BslI CCNNNNNNNGG 3 cut(s) 49, 260, 266
BsnI GGCC 3 cut(s) 5, 176, 270
Bsp1286I GDGCHC 1 cut(s) 159
BspACI CCGC 5 cut(s) 22, 75, 177, 189, 195
BspANI GGCC 3 cut(s) 5, 176, 270
BsrBI CCGCTC 1 cut(s) 189
BsrFI RCCGGY 1 cut(s) 179
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 167, 259
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 29, 140
BstMWI GCNNNNNNNGC 2 cut(s) 83, 195
BstSCI CCNGG 2 cut(s) 150, 259
BstSLI GKGCMC 1 cut(s) 159
BsuRI GGCC 3 cut(s) 5, 176, 270
BtrI CACGTC 1 cut(s) 100
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 251
CviAII CATG 1 cut(s) 104
CviJI RGCY 8 cut(s) 5, 21, 57, 86, 147, 176, 258, 270
CviKI_1 RGCY 8 cut(s) 5, 21, 57, 86, 147, 176, 258, 270
DraIII CACNNNGTG 1 cut(s) 154
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 167
Eco47I GGWCC 1 cut(s) 251
EcoRI GAATTC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 107
FaiI YATR 1 cut(s) 105
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 22, 75, 177, 196
Fsp4HI GCNGC 4 cut(s) 22, 75, 177, 196
GluI GCNGC 4 cut(s) 22, 75, 177, 196
HaeIII GGCC 3 cut(s) 5, 176, 270
HapII CCGG 3 cut(s) 152, 180, 261
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 127, 237
HpaII CCGG 3 cut(s) 152, 180, 261
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 2 cut(s) 126, 186
Hpy188III TCNNGA 2 cut(s) 95, 241
Hpy8I GTNNAC 1 cut(s) 157
HpyAV CCTTC 2 cut(s) 166, 260
HpyCH4III ACNGT 2 cut(s) 29, 140
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 103, 157
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 195
HpySE526I ACGT 1 cut(s) 99
Hsp92II CATG 1 cut(s) 107
LpnPI CCDG 5 cut(s) 19, 165, 193, 217, 234
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 140
MbiI CCGCTC 1 cut(s) 189
MhlI GDGCHC 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 205, 244
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 3 cut(s) 102, 185, 239
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 274
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 152, 180, 261
MspR9I CCNGG 2 cut(s) 152, 261
MwoI GCNNNNNNNGC 2 cut(s) 83, 195
NciI CCSGG 2 cut(s) 152, 261
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 127, 237
PkrI GCNGC 4 cut(s) 23, 76, 178, 197
PspPI GGNCC 1 cut(s) 251
SaqAI TTAA 1 cut(s) 274
SatI GCNGC 4 cut(s) 22, 75, 177, 196
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 152, 261
SduI GDGCHC 1 cut(s) 159
SetI ASST 2 cut(s) 59, 102
SinI GGWCC 1 cut(s) 251
Sse9I AATT 2 cut(s) 205, 244
SsiI CCGC 5 cut(s) 22, 75, 177, 189, 195
StyD4I CCNGG 2 cut(s) 150, 259
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 29, 140
TaiI ACGT 1 cut(s) 102
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 205, 244
TauI GCSGC 4 cut(s) 24, 77, 179, 198
TfiI GAWTC 2 cut(s) 127, 237
Tru1I TTAA 1 cut(s) 274
Tru9I TTAA 1 cut(s) 274
TseFI GTSAC 1 cut(s) 140
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 49, 107, 119
VneI GTGCAC 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 251
XapI RAATTY 1 cut(s) 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.