Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

15765365 .. 15766633

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGGAGTGGATGATGTCACGTCCAGACTTGCTACGGCTTTGGTAATTGGAGGTGACAAATTCCACTGTGAGGATGCTGTGGAGGATTTGACAGAGCCAACCTATCATTGGTTGGTGGGTCATCTGATCTCGGTGGAACCTATGAAGACAGCGGCGCAGATTGGGCAAGTTTGGCCTGTCTCGGATCATGGTTTGATCTCTGGGCAACTGCCGACCTGGGCTCGGAAGATTGCTGGATGTCTGGGGCGGGTGGTTCATGTTGATGAGCGGTGGTTACGACACTATGAAGAGGTGAAGGTATTGGTGGTGCTGAGCCTAGATCGTGCTCTCCCAATGCATTTCAGGGTGGGAGGCTATGGTGGTCCTCTGGTGGGGGACTGGGGTCTGAATATGGGAGCGGGTTCATCTGGGGGAGCAATGAAAGGAGTGGTGTTGGTAGAGGGATCGGCAGTTGTGGTGGATGCAACTCCGCAAACTAGAAAGGGTGGTGGTGGAACTATTACTTCCCGGATGAAGAAAGGAAGGTTAGGAGATGATGTTGATTCTGGGTTGCTAACTTCTGATTGTTTGGCAGTTGGGGCTGAGCCTCTGGTACCAATTAGCCAGGATTCTTCTGGACACAAGAAGCGCAGGATGGAGGCTACTTCCTTTAGTTTTGGGTTGAAGGTCTCCCCTACTAAAAGATTGCAATTTGAGGTAAGGAAGCCTTCATCACCTATCAGTGGAAAGATGGGGAGTGGGAAGAAGCACAAACCTAAGATTCTCTCAGCTGCCAAGCGTCGTGCTCTGCTATCTAGGCTTGAATATGAGGCTATTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

275

Amino Acids

29.38

Weight (kDa)

9.42

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	595
AccB1I	GGYRCC	1 cut(s)	595
AccBSI	CCGCTC	2 cut(s)	271, 401
AciI	CCGC	5 cut(s)	155, 250, 271, 401, 473
AclWI	GGATC	2 cut(s)	195, 454
AcsI	RAATTY	1 cut(s)	62
AfaI	GTAC	1 cut(s)	597
AfiI	CCNNNNNNNGG	5 cut(s)	73, 111, 225, 374, 725
AgsI	TTSAA	2 cut(s)	667, 806
AjiI	CACGTC	1 cut(s)	24
AjnI	CCWGG	2 cut(s)	218, 606
AluBI	AGCT	1 cut(s)	773
AluI	AGCT	1 cut(s)	773
Alw21I	GWGCWC	2 cut(s)	331, 790
Alw26I	GTCTC	2 cut(s)	187, 676
AlwI	GGATC	2 cut(s)	195, 454
AoxI	GGCC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	1 cut(s)	62
Asp718I	GGTACC	1 cut(s)	595
AspLEI	GCGC	2 cut(s)	160, 633
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	3 cut(s)	68, 307, 708
AvaII	GGWCC	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	595
BanII	GRGCYC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	2 cut(s)	331, 790
BbvI	GCAGC	1 cut(s)	760
BccI	CCATC	2 cut(s)	631, 727
BceAI	ACGGC	1 cut(s)	54
BciT130I	CCWGG	2 cut(s)	220, 608
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	187, 676
BfaI	CTAG	3 cut(s)	320, 480, 798
BisI	GCNGC	2 cut(s)	156, 774
BlpI	GCTNAGC	2 cut(s)	314, 585
BlsI	GCNGC	2 cut(s)	157, 775
Bme1390I	CCNGG	3 cut(s)	220, 511, 608
Bme18I	GGWCC	1 cut(s)	365
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	2 cut(s)	141, 597
BmrFI	CCNGG	3 cut(s)	220, 511, 608
BmrI	ACTGGG	1 cut(s)	391
BmsI	GCATC	2 cut(s)	67, 454
BmuI	ACTGGG	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	27
Bpu1102I	GCTNAGC	2 cut(s)	314, 585
BpuMI	CCSGG	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	676
BsaJI	CCNNGG	1 cut(s)	219
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 111, 225, 374, 725
Bse1I	ACTGG	1 cut(s)	386
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	220, 608
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	6 cut(s)	19, 82, 245, 469, 519, 642
BseLI	CCNNNNNNNGG	5 cut(s)	73, 111, 225, 374, 725
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	3 cut(s)	305, 576, 783
BseNI	ACTGG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	760
BshFI	GGCC	1 cut(s)	178
BshNI	GGYRCC	1 cut(s)	595
BsiHKAI	GWGCWC	2 cut(s)	331, 790
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	5 cut(s)	73, 111, 225, 374, 725
BsmAI	GTCTC	2 cut(s)	187, 676
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	1 cut(s)	178
Bso31I	GGTCTC	1 cut(s)	676
Bsp1286I	GDGCHC	3 cut(s)	226, 331, 790
Bsp143I	GATC	5 cut(s)	129, 187, 198, 322, 446
Bsp1720I	GCTNAGC	2 cut(s)	314, 585
BspACI	CCGC	5 cut(s)	155, 250, 271, 401, 473
BspANI	GGCC	1 cut(s)	178
BspCNI	CTCAG	3 cut(s)	306, 577, 782
BspLI	GGNNCC	2 cut(s)	141, 597
BspPI	GGATC	2 cut(s)	195, 454
BspT107I	GGYRCC	1 cut(s)	595
BspTNI	GGTCTC	1 cut(s)	676
BsrBI	CCGCTC	2 cut(s)	271, 401
BsrDI	GCAATG	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	386
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	5 cut(s)	129, 187, 198, 322, 446
Bst2UI	CCWGG	2 cut(s)	220, 608
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	314, 585, 759, 769
BstF5I	GGATG	6 cut(s)	19, 82, 245, 469, 519, 642
BstHHI	GCGC	2 cut(s)	160, 633
BstKTI	GATC	5 cut(s)	132, 190, 201, 325, 449
BstMAI	GTCTC	2 cut(s)	187, 676
BstMBI	GATC	5 cut(s)	129, 187, 198, 322, 446
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 175, 581, 799
BstNI	CCWGG	2 cut(s)	220, 608
BstPAI	GACNNNNGTC	1 cut(s)	384
BstSCI	CCNGG	3 cut(s)	218, 509, 606
BstV1I	GCAGC	1 cut(s)	760
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	178
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	6 cut(s)	19, 82, 245, 469, 519, 642
BtsIMutI	CAGTG	2 cut(s)	67, 730
CfoI	GCGC	2 cut(s)	160, 633
Cfr13I	GGNCC	1 cut(s)	365
CseI	GACGC	1 cut(s)	770
Csp6I	GTAC	1 cut(s)	596
CviAII	CATG	2 cut(s)	191, 260
CviQI	GTAC	1 cut(s)	596
DdeI	CTNAG	4 cut(s)	314, 585, 759, 769
DpnI	GATC	5 cut(s)	131, 189, 200, 324, 448
DpnII	GATC	5 cut(s)	129, 187, 198, 322, 446
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	226
Eco31I	GGTCTC	1 cut(s)	676
Eco47I	GGWCC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	218, 606
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	2 cut(s)	194, 263
FaiI	YATR	7 cut(s)	146, 192, 261, 288, 360, 395, 810
FalI	AAGNNNNNCTT	2 cut(s)	694, 726
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	2 cut(s)	190, 259
FauI	CCCGC	2 cut(s)	243, 394
Fnu4HI	GCNGC	2 cut(s)	156, 774
FokI	GGATG	6 cut(s)	26, 89, 252, 476, 526, 649
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	156, 774
FspBI	CTAG	3 cut(s)	320, 480, 798
GlaI	GCGC	2 cut(s)	159, 632
GluI	GCNGC	2 cut(s)	156, 774
GsuI	CTGGAG	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	178
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	1 cut(s)	770
HhaI	GCGC	2 cut(s)	160, 633
Hin1II	CATG	2 cut(s)	194, 263
Hin6I	GCGC	2 cut(s)	158, 631
HinP1I	GCGC	2 cut(s)	158, 631
HinfI	GANTC	3 cut(s)	545, 611, 763
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	3 cut(s)	68, 307, 708
Hpy188I	TCNGA	5 cut(s)	129, 187, 228, 390, 565
Hpy188III	TCNNGA	2 cut(s)	27, 618
Hpy99I	CGWCG	1 cut(s)	786
HpyAV	CCTTC	4 cut(s)	292, 519, 661, 720
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	340, 467, 691
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 175, 581, 799
HpyF3I	CTNAG	4 cut(s)	314, 585, 759, 769
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	2 cut(s)	194, 263
HspAI	GCGC	2 cut(s)	158, 631
KpnI	GGTACC	1 cut(s)	599
Kzo9I	GATC	5 cut(s)	129, 187, 198, 322, 446
LmnI	GCTCC	3 cut(s)	398, 416, 826
Lsp1109I	GCAGC	1 cut(s)	760
LweI	GCATC	2 cut(s)	67, 454
MaeI	CTAG	3 cut(s)	320, 480, 798
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	3 cut(s)	19, 56, 276
MalI	GATC	5 cut(s)	131, 189, 200, 324, 448
MbiI	CCGCTC	2 cut(s)	271, 401
MboI	GATC	5 cut(s)	129, 187, 198, 322, 446
MboII	GAAGA	6 cut(s)	160, 241, 302, 529, 606, 757
MhlI	GDGCHC	3 cut(s)	226, 331, 790
MluCI	AATT	4 cut(s)	48, 62, 600, 692
Mph1103I	ATGCAT	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	264
MspA1I	CMGCKG	2 cut(s)	155, 773
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	3 cut(s)	220, 511, 608
MvaI	CCWGG	2 cut(s)	220, 608
MwoI	GCNNNNNNNGC	4 cut(s)	166, 175, 581, 799
NciI	CCSGG	1 cut(s)	511
NdeII	GATC	5 cut(s)	129, 187, 198, 322, 446
NlaIII	CATG	2 cut(s)	194, 263
NlaIV	GGNNCC	2 cut(s)	141, 597
NmuCI	GTSAC	2 cut(s)	19, 56
NsiI	ATGCAT	1 cut(s)	342
PfeI	GAWTC	3 cut(s)	545, 611, 763
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	157, 775
PshAI	GACNNNNGTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	218, 606
PspGI	CCWGG	2 cut(s)	218, 606
PspN4I	GGNNCC	2 cut(s)	141, 597
PspPI	GGNCC	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	773
RsaI	GTAC	1 cut(s)	597
RsaNI	GTAC	1 cut(s)	596
RseI	CAYNNNNRTG	1 cut(s)	264
SatI	GCNGC	2 cut(s)	156, 774
Sau3AI	GATC	5 cut(s)	129, 187, 198, 322, 446
Sau96I	GGNCC	1 cut(s)	365
ScrFI	CCNGG	3 cut(s)	220, 511, 608
SduI	GDGCHC	3 cut(s)	226, 331, 790
SfaNI	GCATC	2 cut(s)	67, 454
SinI	GGWCC	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	264
Sse9I	AATT	4 cut(s)	48, 62, 600, 692
SsiI	CCGC	5 cut(s)	155, 250, 271, 401, 473
SspMI	CTAG	3 cut(s)	320, 480, 798
StyD4I	CCNGG	3 cut(s)	218, 509, 606
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	1 cut(s)	26
TasI	AATT	4 cut(s)	48, 62, 600, 692
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	545, 611, 763
TscAI	CASTG	2 cut(s)	74, 730
TseFI	GTSAC	2 cut(s)	19, 56
TseI	GCWGC	1 cut(s)	773
Tsp45I	GTSAC	2 cut(s)	19, 56
TspDTI	ATGAA	7 cut(s)	161, 248, 303, 396, 437, 530, 702
TspRI	CASTG	2 cut(s)	74, 730
VpaK11BI	GGWCC	1 cut(s)	365
XapI	RAATTY	1 cut(s)	62
XcmI	CCANNNNNNNNNTGG	2 cut(s)	108, 614
XspI	CTAG	3 cut(s)	320, 480, 798
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.