Rh7CG366000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001406
Physical Location & Seq
Reverse (-)
45675212 .. 45675388
177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG366000.1

Sequence Viewer

Length: 177 bp
ATGGCTGGTGTTGAGGATGTGACTTCGAAGCTTGCTGCGGCCCTAGCTATTGGGGGAGATGACTTCCACAATGAGGATCCAGCGGTGGATTTGGCAAATCCAACCTATCATTGGTTGGTGGGGCGTCTGGTCTCTGTGGAACCGATGAAAGAGGCGCCGCACCAATTCATGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.23

Weight (kDa)

4.54

Isoelectric Point (pI)

29.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 154
AccB7I CCANNNNNTGG 1 cut(s) 169
AciI CCGC 3 cut(s) 38, 83, 158
AclWI GGATC 2 cut(s) 71, 84
AcyI GRCGYC 2 cut(s) 124, 155
AfiI CCNNNNNNNGG 3 cut(s) 73, 111, 169
AluBI AGCT 2 cut(s) 31, 47
AluI AGCT 2 cut(s) 31, 47
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 2 cut(s) 71, 84
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 40
AsuII TTCGAA 1 cut(s) 26
BamHI GGATCC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 22
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 44
BfoI RGCGCY 1 cut(s) 158
BisI GCNGC 3 cut(s) 36, 39, 158
BlsI GCNGC 3 cut(s) 37, 40, 159
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 3 cut(s) 78, 141, 156
Bpu14I TTCGAA 1 cut(s) 26
BsaHI GRCGYC 2 cut(s) 124, 155
BsaI GGTCTC 1 cut(s) 136
Bsc4I CCNNNNNNNGG 3 cut(s) 73, 111, 169
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 3 cut(s) 73, 111, 169
BseXI GCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 41
BshNI GGYRCC 1 cut(s) 154
BslI CCNNNNNNNGG 3 cut(s) 73, 111, 169
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 38, 83, 158
BspANI GGCC 1 cut(s) 41
BspLI GGNNCC 3 cut(s) 78, 141, 156
BspPI GGATC 2 cut(s) 71, 84
BspT104I TTCGAA 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 136
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 2 cut(s) 124, 155
BstACI GRCGYC 2 cut(s) 124, 155
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 33
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 22
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 41
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 113
CviAII CATG 1 cut(s) 169
CviJI RGCY 4 cut(s) 5, 31, 41, 47
CviKI_1 RGCY 4 cut(s) 5, 31, 41, 47
DinI GGCGCC 1 cut(s) 156
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 136
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
FaeI CATG 1 cut(s) 172
FaiI YATR 2 cut(s) 170, 175
FatI CATG 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 36, 39, 158
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 3 cut(s) 36, 39, 158
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 156
GluI GCNGC 3 cut(s) 36, 39, 158
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 1 cut(s) 41
HgaI GACGC 1 cut(s) 113
HhaI GCGC 1 cut(s) 157
Hin1I GRCGYC 2 cut(s) 124, 155
Hin1II CATG 1 cut(s) 172
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92I GRCGYC 2 cut(s) 124, 155
Hsp92II CATG 1 cut(s) 172
HspAI GCGC 1 cut(s) 155
KasI GGCGCC 1 cut(s) 154
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 93, 113
Lsp1109I GCAGC 1 cut(s) 22
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MflI RGATCY 1 cut(s) 76
MluCI AATT 1 cut(s) 164
Mly113I GGCGCC 1 cut(s) 155
MmeI TCCRAC 1 cut(s) 125
MnlI CCTC 3 cut(s) 7, 67, 145
MspA1I CMGCKG 1 cut(s) 83
MwoI GCNNNNNNNGC 1 cut(s) 44
NarI GGCGCC 1 cut(s) 155
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 3 cut(s) 78, 141, 156
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 169
PkrI GCNGC 3 cut(s) 37, 40, 159
PluTI GGCGCC 1 cut(s) 158
PspN4I GGNNCC 3 cut(s) 78, 141, 156
PspPI GGNCC 1 cut(s) 40
PsuI RGATCY 1 cut(s) 76
SatI GCNGC 3 cut(s) 36, 39, 158
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 1 cut(s) 40
SetI ASST 3 cut(s) 33, 49, 107
SfoI GGCGCC 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 26
SgeI CNNG 5 cut(s) 18, 44, 56, 92, 140
Sse9I AATT 1 cut(s) 164
SsiI CCGC 3 cut(s) 38, 83, 158
SspDI GGCGCC 1 cut(s) 154
SspMI CTAG 1 cut(s) 44
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 164
TauI GCSGC 2 cut(s) 41, 160
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 35
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 157, 161
Van91I CCANNNNNTGG 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 108
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.