Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

84655491 .. 84655899

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCCGGAGTACTTAAACTGCAGCGGTTTATTGTTCCTGTACTCGTCCTGAGCTTCATCTTGCTATCTCTGGCCATTGAAGCCCGGCCGATGCATGAGCATGGCTCGAAGATTCATCGTCATCAGTTTCACCACCACAAGGAGGTGCACAACCACAAGTACAATGGTCACAGGAAGGCTGTACCAAGCCCAGGAGGGGCACTTGGTCAAGGCTTTATTGATTTTCTGAACCTTTGGGGAGTCAAGAACAGTGGTCCGAGTCCTGGTGCAGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

92

Amino Acids

10.16

Weight (kDa)

10.37

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AcoI	YGGCCR	3 cut(s)	3, 72, 86
AfaI	GTAC	4 cut(s)	12, 42, 161, 183
AfiI	CCNNNNNNNGG	6 cut(s)	139, 142, 191, 196, 263, 269
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	190, 262
AluBI	AGCT	1 cut(s)	54
AluI	AGCT	1 cut(s)	54
Alw21I	GWGCWC	1 cut(s)	150
Alw44I	GTGCAC	1 cut(s)	146
AoxI	GGCC	4 cut(s)	3, 72, 86, 271
ApaLI	GTGCAC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	22
AspS9I	GGNCC	1 cut(s)	254
AsuC2I	CCSGG	1 cut(s)	85
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	1 cut(s)	254
BaeGI	GKGCMC	2 cut(s)	150, 202
BalI	TGGCCA	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	34
BciT130I	CCWGG	2 cut(s)	192, 264
BcnI	CCSGG	1 cut(s)	85
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	23
BlsI	GCNGC	1 cut(s)	24
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	85, 192, 264
Bme18I	GGWCC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	254
BmrFI	CCNGG	3 cut(s)	85, 192, 264
BmsI	GCATC	1 cut(s)	81
BplI	GAGNNNNNCTC	2 cut(s)	89, 121
Bpu10I	CCTNAGC	1 cut(s)	50
BpuMI	CCSGG	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	190
Bsc4I	CCNNNNNNNGG	6 cut(s)	139, 142, 191, 196, 263, 269
BseBI	CCWGG	2 cut(s)	192, 264
BseDI	CCNNGG	1 cut(s)	190
BseLI	CCNNNNNNNGG	6 cut(s)	139, 142, 191, 196, 263, 269
BseMII	CTCAG	1 cut(s)	41
BseSI	GKGCMC	2 cut(s)	150, 202
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	34
Bsh1285I	CGRYCG	1 cut(s)	89
BshFI	GGCC	4 cut(s)	5, 74, 88, 273
BsiEI	CGRYCG	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	6, 85
BslI	CCNNNNNNNGG	6 cut(s)	139, 142, 191, 196, 263, 269
BsnI	GGCC	4 cut(s)	5, 74, 88, 273
Bsp1286I	GDGCHC	2 cut(s)	150, 202
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	4 cut(s)	5, 74, 88, 273
BspCNI	CTCAG	1 cut(s)	42
BspMAI	CTGCAG	1 cut(s)	24
BssECI	CCNNGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	192, 264
Bst4CI	ACNGT	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	271
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	267
BstMCI	CGRYCG	1 cut(s)	89
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	2 cut(s)	192, 264
BstSCI	CCNGG	3 cut(s)	83, 190, 262
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	2 cut(s)	150, 202
BstV1I	GCAGC	1 cut(s)	34
BstZI	CGGCCG	1 cut(s)	86
BsuRI	GGCC	4 cut(s)	5, 74, 88, 273
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	271
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	4 cut(s)	11, 41, 160, 182
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	2 cut(s)	95, 101
CviQI	GTAC	4 cut(s)	11, 41, 160, 182
DdeI	CTNAG	1 cut(s)	50
EaeI	YGGCCR	3 cut(s)	3, 72, 86
EagI	CGGCCG	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	86
Eco47I	GGWCC	1 cut(s)	254
Eco52I	CGGCCG	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	267
EcoRII	CCWGG	2 cut(s)	190, 262
EcoT22I	ATGCAT	1 cut(s)	96
FaeI	CATG	2 cut(s)	98, 104
FaiI	YATR	2 cut(s)	96, 102
FatI	CATG	2 cut(s)	94, 100
Fnu4HI	GCNGC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	23
GluI	GCNGC	1 cut(s)	23
HaeIII	GGCC	4 cut(s)	5, 74, 88, 273
HapII	CCGG	2 cut(s)	6, 85
Hin1II	CATG	2 cut(s)	98, 104
HinfI	GANTC	3 cut(s)	112, 240, 259
HpaII	CCGG	2 cut(s)	6, 85
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	228, 258
Hpy188III	TCNNGA	2 cut(s)	49, 244
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	22, 94, 148, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	2 cut(s)	98, 104
Lsp1109I	GCAGC	1 cut(s)	34
LweI	GCATC	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	167
MboII	GAAGA	1 cut(s)	121
MhlI	GDGCHC	2 cut(s)	150, 202
MlsI	TGGCCA	1 cut(s)	74
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	249, 268
MnlI	CCTC	2 cut(s)	136, 188
Mox20I	TGGCCA	1 cut(s)	74
Mph1103I	ATGCAT	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	74
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	6, 85
MspR9I	CCNGG	3 cut(s)	85, 192, 264
MvaI	CCWGG	2 cut(s)	192, 264
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	85
NlaIII	CATG	2 cut(s)	98, 104
NmuCI	GTSAC	1 cut(s)	167
NsiI	ATGCAT	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	24
PleI	GAGTC	2 cut(s)	248, 267
PpsI	GAGTC	2 cut(s)	248, 267
Psp6I	CCWGG	2 cut(s)	190, 262
PspGI	CCWGG	2 cut(s)	190, 262
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	12, 42, 161, 183
RsaNI	GTAC	4 cut(s)	11, 41, 160, 182
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	23
Sau96I	GGNCC	1 cut(s)	254
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	249, 268
ScrFI	CCNGG	3 cut(s)	85, 192, 264
SduI	GDGCHC	2 cut(s)	150, 202
SetI	ASST	3 cut(s)	56, 147, 234
SfaNI	GCATC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	99
SsiI	CCGC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	83, 190, 262
TaaI	ACNGT	1 cut(s)	251
TaqI	TCGA	1 cut(s)	107
TatI	WGTACW	3 cut(s)	10, 40, 159
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	22
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	2 cut(s)	46, 104
TspRI	CASTG	1 cut(s)	256
VneI	GTGCAC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	254
XagI	CCTNNNNNAGG	1 cut(s)	267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	12
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.