Rorug02G0497700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001406
Physical Location & Seq
Forward (+)
63063317 .. 63067939
4623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0497700.1

Sequence Viewer

Length: 1425 bp
ATGAAATGGAACACAAAATATGCATTTGAGGGCCCGTCCAATGTTTCATTCCTGGATCCGCCCCTGGGGATCGGGGTGCAGCGCTGGGCGCGCAAGACTAGAGGCTTGGAGGCGCTGCAGGTGACAACCCAGATGAGTTCTGGGTTCTCCGGTGGGAACGGGGGTCATCGACGGCAAGAACTGATGCGGTGCTGCAATCGGTGTTGGGATGCAGGAATCAATCGGTGCTGCGATCGGTGTTTGGGGCTGCTGGCCAGTGAGATGAGGCTGGCCGCAGGCTTGAGGCTGGAGGCGCTGAGGCTGGAGAGCGTGGGGCTGCTGCTGGGTTCTGCAGGCTGGAGAGCGCGGGCCTTACGCTCGGTCTCCCTACGCCGTCGTTTCTGCGCTTATTCACCGGAGCGGGAGCTTCGAATCGGCCCTGTAAAGATAGAGAGATCTGGTAGAGGCGGTGCCGATTTTCGGGAATTGCTTCGGAGATCCTCAGGAGGTCCGATTTCATTCTTGAGCTTTACGAGACTTTTGCTTGGTTCCAATGGCCACCGTTCTAGGACAGTTGATCTAGGAGATTGTCAAGAAAACAACTCCTTGGTCAAGCAGTTCGGCTGGAGCCAAGCCGGCGTCCGTCGGTCCGTTTCAACAAGGAGCCTAACAACCTCTACAACCTCCACTCCTAAAAGCATTCCGGTTTGGCAAACAAGAAGACTGTTGAGTATTCAGGCTGCAGGCAAAGACCAGTCTGTGGTGCTCGCCACCACCAAGACCAGGAAGCAGAACAAGCCAACCAGTTTGGTTCACAAGTATGTGATGAGGAAGGATTTTCGCCTCACGGCCAAGGCTGTCACCAACCAGTTTTCTAATGTAAATGTGGTGTGGTACTCCGGTTGCCTTGAGTGTGTTGACCATTTGGTAGTTCCGACTATTTTGCACCTTACTAGCAGTGATGAGCAGCTAACATATAAGAAGATCTCACTTTGTGGGAGGTTTTCAATGAAATTTATTTGTTACGCTTGGCTTCTGAGCAGACATTTAGGTAGGCTTTCTGGTAAAGAATTTTCAACCCCTGAAACAATAAATTGCAAATTCTTCTGTAATGTGTTGATTCATGCAGTTGACAAACTTGAGAGCTTCTTAAGGCACTTTCCCGTTTTCCCGAATGCTTTTCTGGTTGGTGGTCTTGCAGACTTCTTTGTTATTGAACTTGCAGATCAGCTTCAAAAATTGAAGGTGGAACCGGTATTGCTCCATTACTTTTCACACATTAAAGTTCTCCAGGGCATGGAGCTGAGAATGGCCACAAGTACAACGTTAAAGACTTGTTTGTATAGCTTCACTTCTCCTGGTGGTCCAATGTACCCTACAAGAGTTGTTCGTCATGCTGCCTGGGATGCTTTAGATTTGCTTTTTCCAGTGATTTCAAGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

474

Amino Acids

53.14

Weight (kDa)

10.0

Isoelectric Point (pI)

50.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 109
Acc36I ACCTGC 1 cut(s) 109
AccB1I GGYRCC 1 cut(s) 449
AccB7I CCANNNNNTGG 2 cut(s) 739, 1276
AccBSI CCGCTC 1 cut(s) 400
AccII CGCG 2 cut(s) 91, 346
AciI CCGC 6 cut(s) 59, 187, 273, 346, 400, 447
AclI AACGTT 1 cut(s) 1304
AclWI GGATC 4 cut(s) 50, 63, 77, 471
AcoI YGGCCR 5 cut(s) 252, 270, 535, 828, 1290
AcsI RAATTY 3 cut(s) 992, 1049, 1079
AcyI GRCGYC 1 cut(s) 618
AdeI CACNNNGTG 1 cut(s) 974
AfaI GTAC 3 cut(s) 875, 1300, 1352
AfeI AGCGCT 1 cut(s) 83
AfiI CCNNNNNNNGG 5 cut(s) 65, 459, 739, 762, 1276
AflII CTTAAG 1 cut(s) 1129
AgeI ACCGGT 1 cut(s) 1231
AgsI TTSAA 7 cut(s) 636, 987, 1056, 1196, 1214, 1222, 1416
AjnI CCWGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 8 cut(s) 406, 507, 949, 1125, 1210, 1282, 1326, 1419
AluI AGCT 8 cut(s) 406, 507, 949, 1125, 1210, 1282, 1326, 1419
Alw21I GWGCWC 1 cut(s) 747
Alw26I GTCTC 2 cut(s) 367, 508
AlwI GGATC 4 cut(s) 50, 63, 77, 471
Aor51HI AGCGCT 1 cut(s) 83
AoxI GGCC 8 cut(s) 31, 252, 270, 348, 415, 535, 828, 1290
ApaI GGGCCC 1 cut(s) 35
ApoI RAATTY 3 cut(s) 992, 1049, 1079
AsiGI ACCGGT 1 cut(s) 1231
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 7 cut(s) 84, 91, 93, 115, 295, 346, 386
AspS9I GGNCC 7 cut(s) 31, 32, 348, 416, 488, 627, 1343
AsuHPI GGTGA 3 cut(s) 133, 384, 832
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 3 cut(s) 488, 627, 1343
AxyI CCTNAGG 1 cut(s) 481
BaeGI GKGCMC 1 cut(s) 35
BaeI ACNNNNGTAYC 2 cut(s) 865, 898
BalI TGGCCA 3 cut(s) 254, 537, 1292
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 706
Bbv12I GWGCWC 1 cut(s) 747
BbvCI CCTCAGC 1 cut(s) 296
BceAI ACGGC 3 cut(s) 188, 357, 843
BcgI CGANNNNNNTGC 4 cut(s) 502, 536, 904, 938
BciT130I CCWGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
BcoDI GTCTC 2 cut(s) 367, 508
BfaI CTAG 4 cut(s) 99, 546, 560, 933
BfmI CTRYAG 3 cut(s) 116, 330, 720
BfoI RGCGCY 3 cut(s) 85, 116, 296
BfrI CTTAAG 1 cut(s) 1129
BfuAI ACCTGC 1 cut(s) 109
BglI GCCNNNNNGGC 1 cut(s) 615
BglII AGATCT 2 cut(s) 434, 963
Bme1390I CCNGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
Bme18I GGWCC 3 cut(s) 488, 627, 1343
BmgT120I GGNCC 7 cut(s) 31, 32, 348, 416, 488, 627, 1343
BmiI GGNNCC 7 cut(s) 33, 57, 451, 529, 608, 644, 1230
BmrFI CCNGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
BmsI GCATC 3 cut(s) 174, 199, 1375
BpiI GAAGAC 1 cut(s) 706
BpmI CTGGAG 5 cut(s) 308, 323, 358, 625, 1253
Bpu10I CCTNAGC 1 cut(s) 296
Bpu14I TTCGAA 1 cut(s) 409
BpuEI CTTGAG 4 cut(s) 301, 523, 908, 1139
BsaHI GRCGYC 1 cut(s) 618
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 6 cut(s) 63, 64, 585, 831, 1270, 1380
BsaWI WCCGGW 5 cut(s) 149, 394, 682, 878, 1231
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 5 cut(s) 65, 459, 739, 762, 1276
Bse118I RCCGGY 2 cut(s) 614, 1231
Bse1I ACTGG 5 cut(s) 255, 733, 783, 847, 1406
Bse21I CCTNAGG 1 cut(s) 481
BseBI CCWGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
BseDI CCNNGG 6 cut(s) 63, 64, 585, 831, 1270, 1380
BseGI GGATG 2 cut(s) 214, 1390
BseLI CCNNNNNNNGG 5 cut(s) 65, 459, 739, 762, 1276
BseMII CTCAG 4 cut(s) 287, 495, 1007, 1274
BseNI ACTGG 5 cut(s) 255, 733, 783, 847, 1406
BsePI GCGCGC 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 35
BseYI CCCAGC 2 cut(s) 84, 322
BsgI GTGCAG 1 cut(s) 98
Bsh1236I CGCG 2 cut(s) 91, 346
Bsh1285I CGRYCG 1 cut(s) 235
BshFI GGCC 8 cut(s) 33, 254, 272, 350, 417, 537, 830, 1292
BshNI GGYRCC 1 cut(s) 449
BshTI ACCGGT 1 cut(s) 1231
BsiEI CGRYCG 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 747
BsiSI CCGG 6 cut(s) 150, 395, 615, 683, 879, 1232
BslI CCNNNNNNNGG 5 cut(s) 65, 459, 739, 762, 1276
BsmAI GTCTC 2 cut(s) 367, 508
BsmI GAATGC 2 cut(s) 678, 1159
BsnI GGCC 8 cut(s) 33, 254, 272, 350, 417, 537, 830, 1292
Bso31I GGTCTC 1 cut(s) 367
Bsp119I TTCGAA 1 cut(s) 409
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 2 cut(s) 35, 747
Bsp143I GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
BspACI CCGC 6 cut(s) 59, 187, 273, 346, 400, 447
BspANI GGCC 8 cut(s) 33, 254, 272, 350, 417, 537, 830, 1292
BspCNI CTCAG 4 cut(s) 288, 494, 1008, 1275
BspFNI CGCG 2 cut(s) 91, 346
BspLI GGNNCC 7 cut(s) 33, 57, 451, 529, 608, 644, 1230
BspMAI CTGCAG 3 cut(s) 120, 334, 724
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 4 cut(s) 50, 63, 77, 471
BspT104I TTCGAA 1 cut(s) 409
BspT107I GGYRCC 1 cut(s) 449
BspTI CTTAAG 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 367
BsrBI CCGCTC 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 614, 1231
BsrI ACTGG 5 cut(s) 255, 733, 783, 847, 1406
BssAI RCCGGY 2 cut(s) 614, 1231
BssECI CCNNGG 6 cut(s) 63, 64, 585, 831, 1270, 1380
BssHII GCGCGC 1 cut(s) 89
BssMI GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
BssNI GRCGYC 1 cut(s) 618
BssT1I CCWWGG 2 cut(s) 585, 831
Bst2UI CCWGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
Bst4CI ACNGT 3 cut(s) 542, 553, 705
BstACI GRCGYC 1 cut(s) 618
BstAFI CTTAAG 1 cut(s) 1129
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 9 cut(s) 91, 252, 270, 277, 334, 348, 616, 724, 747
BstDEI CTNAG 4 cut(s) 296, 481, 1016, 1283
BstF5I GGATG 2 cut(s) 214, 1390
BstFNI CGCG 2 cut(s) 91, 346
BstH2I RGCGCY 3 cut(s) 85, 116, 296
BstHHI GCGC 7 cut(s) 84, 91, 93, 115, 295, 346, 386
BstKTI GATC 8 cut(s) 58, 72, 235, 437, 479, 559, 966, 1207
BstMAI GTCTC 2 cut(s) 367, 508
BstMBI GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
BstMCI CGRYCG 1 cut(s) 235
BstMWI GCNNNNNNNGC 6 cut(s) 88, 90, 292, 615, 775, 1385
BstNI CCWGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
BstSCI CCNGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
BstSFI CTRYAG 3 cut(s) 116, 330, 720
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 2 cut(s) 91, 346
BstV2I GAAGAC 1 cut(s) 706
BstX2I RGATCY 4 cut(s) 55, 434, 476, 963
BstYI RGATCY 4 cut(s) 55, 434, 476, 963
Bsu36I CCTNAGG 1 cut(s) 481
BsuRI GGCC 8 cut(s) 33, 254, 272, 350, 417, 537, 830, 1292
BtsCI GGATG 2 cut(s) 214, 1390
BtsI GCAGTG 1 cut(s) 943
BtsIMutI CAGTG 3 cut(s) 262, 943, 1413
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 9 cut(s) 91, 252, 270, 277, 334, 348, 616, 724, 747
CfoI GCGC 7 cut(s) 84, 91, 93, 115, 295, 346, 386
Cfr10I RCCGGY 2 cut(s) 614, 1231
Cfr13I GGNCC 7 cut(s) 31, 32, 348, 416, 488, 627, 1343
CpoI CGGWCCG 1 cut(s) 627
CseI GACGC 1 cut(s) 607
Csp6I GTAC 3 cut(s) 874, 1299, 1351
CspAI ACCGGT 1 cut(s) 1231
CspI CGGWCCG 1 cut(s) 627
CviAII CATG 3 cut(s) 1103, 1276, 1373
CviQI GTAC 3 cut(s) 874, 1299, 1351
DdeI CTNAG 4 cut(s) 296, 481, 1016, 1283
DpnI GATC 8 cut(s) 57, 71, 234, 436, 478, 558, 965, 1206
DpnII GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
DraIII CACNNNGTG 1 cut(s) 974
EaeI YGGCCR 5 cut(s) 252, 270, 535, 828, 1290
EciI GGCGGA 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 585, 831
Eco24I GRGCYC 1 cut(s) 35
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 488, 627, 1343
Eco47III AGCGCT 1 cut(s) 83
Eco81I CCTNAGG 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 31
EcoRII CCWGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
EcoT14I CCWWGG 2 cut(s) 585, 831
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 2 cut(s) 585, 831
FaeI CATG 3 cut(s) 1106, 1279, 1376
FaiI YATR 8 cut(s) 21, 801, 955, 957, 1104, 1277, 1323, 1374
FatI CATG 3 cut(s) 1102, 1275, 1372
FauI CCCGC 2 cut(s) 339, 393
FokI GGATG 2 cut(s) 221, 1397
FriOI GRGCYC 1 cut(s) 35
FspBI CTAG 4 cut(s) 99, 546, 560, 933
GlaI GCGC 7 cut(s) 83, 90, 92, 114, 294, 345, 385
GsaI CCCAGC 2 cut(s) 88, 326
GsuI CTGGAG 5 cut(s) 308, 323, 358, 625, 1253
HaeII RGCGCY 3 cut(s) 85, 116, 296
HaeIII GGCC 8 cut(s) 33, 254, 272, 350, 417, 537, 830, 1292
HapII CCGG 6 cut(s) 150, 395, 615, 683, 879, 1232
HgaI GACGC 1 cut(s) 607
HhaI GCGC 7 cut(s) 84, 91, 93, 115, 295, 346, 386
Hin1I GRCGYC 1 cut(s) 618
Hin1II CATG 3 cut(s) 1106, 1279, 1376
Hin6I GCGC 7 cut(s) 82, 89, 91, 113, 293, 344, 384
HinP1I GCGC 7 cut(s) 82, 89, 91, 113, 293, 344, 384
HincII GTYRAC 2 cut(s) 898, 1111
HindII GTYRAC 2 cut(s) 898, 1111
HinfI GANTC 3 cut(s) 216, 411, 1099
HpaII CCGG 6 cut(s) 150, 395, 615, 683, 879, 1232
HphI GGTGA 3 cut(s) 133, 384, 832
Hpy166II GTNNAC 3 cut(s) 793, 898, 1111
Hpy188I TCNGA 4 cut(s) 474, 492, 915, 1017
Hpy188III TCNNGA 5 cut(s) 461, 483, 502, 572, 1150
Hpy8I GTNNAC 3 cut(s) 793, 898, 1111
Hpy99I CGWCG 3 cut(s) 174, 378, 627
HpyAV CCTTC 2 cut(s) 805, 1216
HpyCH4III ACNGT 3 cut(s) 542, 553, 705
HpyCH4IV ACGT 1 cut(s) 1304
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 90, 292, 615, 775, 1385
HpyF3I CTNAG 4 cut(s) 296, 481, 1016, 1283
HpySE526I ACGT 1 cut(s) 1304
Hsp92I GRCGYC 1 cut(s) 618
Hsp92II CATG 3 cut(s) 1106, 1279, 1376
HspAI GCGC 7 cut(s) 82, 89, 91, 113, 293, 344, 384
KroI GCCGGC 1 cut(s) 614
KroNI GCCGGC 1 cut(s) 616
Kzo9I GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
LmnI GCTCC 6 cut(s) 397, 403, 606, 642, 1245, 1279
LweI GCATC 3 cut(s) 174, 199, 1375
MaeI CTAG 4 cut(s) 99, 546, 560, 933
MaeII ACGT 1 cut(s) 1304
MaeIII GTNAC 3 cut(s) 121, 838, 1001
MalI GATC 8 cut(s) 57, 71, 234, 436, 478, 558, 965, 1206
MbiI CCGCTC 1 cut(s) 400
MboI GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
MboII GAAGA 3 cut(s) 711, 973, 1075
MflI RGATCY 4 cut(s) 55, 434, 476, 963
MhlI GDGCHC 2 cut(s) 35, 747
MlsI TGGCCA 3 cut(s) 254, 537, 1292
MluCI AATT 6 cut(s) 464, 992, 1049, 1072, 1079, 1217
MluNI TGGCCA 3 cut(s) 254, 537, 1292
MmeI TCCRAC 1 cut(s) 938
Mox20I TGGCCA 3 cut(s) 254, 537, 1292
Mph1103I ATGCAT 1 cut(s) 25
MroNI GCCGGC 1 cut(s) 614
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 3 cut(s) 254, 537, 1292
MseI TTAA 3 cut(s) 1130, 1260, 1307
MslI CAYNNNNRTG 1 cut(s) 798
Msp20I TGGCCA 3 cut(s) 254, 537, 1292
MspCI CTTAAG 1 cut(s) 1129
MspI CCGG 6 cut(s) 150, 395, 615, 683, 879, 1232
MspR9I CCNGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
Mva1269I GAATGC 2 cut(s) 678, 1159
MvaI CCWGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
MvnI CGCG 2 cut(s) 91, 346
MwoI GCNNNNNNNGC 6 cut(s) 88, 90, 292, 615, 775, 1385
NaeI GCCGGC 1 cut(s) 616
NdeII GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
NgoMIV GCCGGC 1 cut(s) 614
NlaIII CATG 3 cut(s) 1106, 1279, 1376
NlaIV GGNNCC 7 cut(s) 33, 57, 451, 529, 608, 644, 1230
NmuCI GTSAC 2 cut(s) 121, 838
NsiI ATGCAT 1 cut(s) 25
NspV TTCGAA 1 cut(s) 409
PaqCI CACCTGC 1 cut(s) 109
PasI CCCWGGG 1 cut(s) 64
PauI GCGCGC 1 cut(s) 89
PctI GAATGC 2 cut(s) 678, 1159
PdiI GCCGGC 1 cut(s) 616
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 3 cut(s) 216, 411, 1099
PflMI CCANNNNNTGG 2 cut(s) 739, 1276
PfoI TCCNGGA 1 cut(s) 51
PinAI ACCGGT 1 cut(s) 1231
Ple19I CGATCG 1 cut(s) 235
Psp1406I AACGTT 1 cut(s) 1304
Psp6I CCWGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
PspFI CCCAGC 2 cut(s) 84, 322
PspGI CCWGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
PspN4I GGNNCC 7 cut(s) 33, 57, 451, 529, 608, 644, 1230
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 7 cut(s) 31, 32, 348, 416, 488, 627, 1343
PstI CTGCAG 3 cut(s) 120, 334, 724
PsuI RGATCY 4 cut(s) 55, 434, 476, 963
PteI GCGCGC 1 cut(s) 89
PvuI CGATCG 1 cut(s) 235
RsaI GTAC 3 cut(s) 875, 1300, 1352
RsaNI GTAC 3 cut(s) 874, 1299, 1351
RseI CAYNNNNRTG 1 cut(s) 798
Rsr2I CGGWCCG 1 cut(s) 627
RsrII CGGWCCG 1 cut(s) 627
SaqAI TTAA 3 cut(s) 1130, 1260, 1307
Sau3AI GATC 8 cut(s) 55, 69, 232, 434, 476, 556, 963, 1204
Sau96I GGNCC 7 cut(s) 31, 32, 348, 416, 488, 627, 1343
ScrFI CCNGG 6 cut(s) 53, 65, 763, 1271, 1338, 1381
SduI GDGCHC 2 cut(s) 35, 747
SfaNI GCATC 3 cut(s) 174, 199, 1375
SfcI CTRYAG 3 cut(s) 116, 330, 720
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 3 cut(s) 488, 627, 1343
SmiMI CAYNNNNRTG 1 cut(s) 798
SmlI CTYRAG 5 cut(s) 280, 502, 887, 1118, 1129
SmoI CTYRAG 5 cut(s) 280, 502, 887, 1118, 1129
Sse9I AATT 6 cut(s) 464, 992, 1049, 1072, 1079, 1217
SsiI CCGC 6 cut(s) 59, 187, 273, 346, 400, 447
SspMI CTAG 4 cut(s) 99, 546, 560, 933
StyD4I CCNGG 6 cut(s) 51, 63, 761, 1269, 1336, 1379
StyI CCWWGG 2 cut(s) 585, 831
TaaI ACNGT 3 cut(s) 542, 553, 705
TaiI ACGT 1 cut(s) 1307
TaqI TCGA 2 cut(s) 169, 409
TaqII GACCGA 2 cut(s) 349, 615
TasI AATT 6 cut(s) 464, 992, 1049, 1072, 1079, 1217
TatI WGTACW 1 cut(s) 1298
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 3 cut(s) 216, 411, 1099
Tru1I TTAA 3 cut(s) 1130, 1260, 1307
Tru9I TTAA 3 cut(s) 1130, 1260, 1307
TscAI CASTG 3 cut(s) 262, 943, 1413
TseFI GTSAC 2 cut(s) 121, 838
Tsp45I GTSAC 2 cut(s) 121, 838
TspDTI ATGAA 5 cut(s) 17, 36, 486, 1004, 1091
TspGWI ACGGA 2 cut(s) 611, 619
TspRI CASTG 3 cut(s) 262, 943, 1413
Van91I CCANNNNNTGG 2 cut(s) 739, 1276
Vha464I CTTAAG 1 cut(s) 1129
VpaK11BI GGWCC 3 cut(s) 488, 627, 1343
XapI RAATTY 3 cut(s) 992, 1049, 1079
XcmI CCANNNNNNNNNTGG 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 4 cut(s) 99, 546, 560, 933
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.