Rh2CG472000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001406
Physical Location & Seq
Forward (+)
63685979 .. 63686275
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG472000.1

Sequence Viewer

Length: 297 bp
ATGGACTCTCGGCCGCTGGTGTTGGAGGAGAGTGTTGATGAGGTGCAGGTTATGGCTGGGTCAATGCTTGGGAAAAGGGGTGGTGATGGTGAAGTTACGTCTCCATTGAAGAAAGGGAGGTTGGGATCTGGATCTGGTGTTGATCGAGGGCTTAATGACTCATCTGGAGTTTTTGTGGGAGGTGTGTCATCGGCTCCTGTTAGCCCGGATTCCTTAGGTCATCGAAAACGTAGGATCTCTACTTCCACTTTTAGTTCTGGGATGGAGGGCTCTCCTACCAAAGGCTTGCACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

10.06

Weight (kDa)

8.18

Isoelectric Point (pI)

51.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AciI CCGC 1 cut(s) 14
AclWI GGATC 3 cut(s) 133, 139, 242
AcoI YGGCCR 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 281
AgsI TTSAA 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 104, 136
Alw26I GTCTC 1 cut(s) 105
AlwI GGATC 3 cut(s) 133, 139, 242
AoxI GGCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 95, 101
AxyI CCTNAGG 1 cut(s) 214
BanII GRGCYC 1 cut(s) 272
BccI CCATC 2 cut(s) 80, 256
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 105
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
Bme1390I CCNGG 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 186
BpuMI CCSGG 1 cut(s) 206
BsaBI GATNNNNATC 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse21I CCTNAGG 1 cut(s) 214
Bse8I GATNNNNATC 1 cut(s) 130
BseGI GGATG 1 cut(s) 267
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 41
BseX3I CGGCCG 1 cut(s) 11
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 65
Bsh1285I CGRYCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 105
BsmBI CGTCTC 1 cut(s) 105
BsnI GGCC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 125, 131, 142, 234
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 195
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 3 cut(s) 133, 139, 242
BssMI GATC 4 cut(s) 125, 131, 142, 234
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 214
BstENI CCTNNNNNAGG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 4 cut(s) 128, 134, 145, 237
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 4 cut(s) 125, 131, 142, 234
BstMCI CGRYCG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 204
BstX2I RGATCY 3 cut(s) 125, 131, 234
BstYI RGATCY 3 cut(s) 125, 131, 234
BstZI CGGCCG 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 214
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 267
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 287
CviJI RGCY 7 cut(s) 13, 56, 151, 194, 204, 270, 285
CviKI_1 RGCY 7 cut(s) 13, 56, 151, 194, 204, 270, 285
DdeI CTNAG 1 cut(s) 214
DpnI GATC 4 cut(s) 127, 133, 144, 236
DpnII GATC 4 cut(s) 125, 131, 142, 234
EaeI YGGCCR 1 cut(s) 11
EagI CGGCCG 1 cut(s) 11
EclXI CGGCCG 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 272
Eco52I CGGCCG 1 cut(s) 11
Eco81I CCTNAGG 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 105
FaiI YATR 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 274
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 206
HinfI GANTC 3 cut(s) 5, 158, 209
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 95, 101
Hpy188III TCNNGA 2 cut(s) 129, 165
HpyCH4IV ACGT 2 cut(s) 98, 229
HpyCH4V TGCA 2 cut(s) 46, 289
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 2 cut(s) 98, 229
Kzo9I GATC 4 cut(s) 125, 131, 142, 234
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 9 cut(s) 2, 32, 42, 114, 120, 150, 210, 219, 243
MaeII ACGT 2 cut(s) 98, 229
MaeIII GTNAC 1 cut(s) 94
MalI GATC 4 cut(s) 127, 133, 144, 236
MboI GATC 4 cut(s) 125, 131, 142, 234
MboII GAAGA 1 cut(s) 121
MflI RGATCY 3 cut(s) 125, 131, 234
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 1 cut(s) 152
MnlI CCTC 6 cut(s) 19, 34, 111, 140, 173, 259
MseI TTAA 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 16
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 206
NciI CCSGG 1 cut(s) 206
NdeII GATC 4 cut(s) 125, 131, 142, 234
NlaIV GGNNCC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 195
PsuI RGATCY 3 cut(s) 125, 131, 234
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 1 cut(s) 14
Sau3AI GATC 4 cut(s) 125, 131, 142, 234
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 272
SetI ASST 7 cut(s) 45, 51, 101, 122, 184, 220, 232
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 204
TaiI ACGT 2 cut(s) 101, 232
TaqI TCGA 2 cut(s) 145, 223
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
XagI CCTNNNNNAGG 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.