RLG00000024929

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0001406
Physical Location & Seq
Forward (+)
40417220 .. 40418765
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024929

Sequence Viewer

Length: 696 bp
ATGGTGGTGGAGGCTGTTACCCATCCCAGTGGGGTGAGAGTGCCACCGGGTTTTGCAGCTTTACTGGAACCCAGAGGGGTGGGTGACCTTTCTGGGGATGGTCCATTTTTGTTGGAAGGTAAGGTGGACTCTTTGTCTGTGGTATTGGAAGAGAGTGTTGATGAGGTGCAGACCATGGTTGGGTCGATGCTTGGGAAAAGGGGTGGTGGTGGTGAAGTCACTTCCCCATTGAAGAAAGGGAGATTGGGATCTGGATCTGGTGTTGATCAAGGGCCTAATGACTCATCTAAAGCTTCTGTGGGAGGTGTGCAACATGCTCCTATTAGCCCGGATTCTTTGGGTCATCGGAAGAGCAGGATGTCTGCTTCCACTTTTAGTTTTGGGGTGGAGGGCTTCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCATCCCCTACTACTGAACGCCAATGGGCGCTAGGAAAAATCAGTGCCTCCGCAATCCTGACGCCGCCACACAGTAGACACACCGACCTCTATCTCAACCCAAAAAAGTCGGGATCTCCGAACTCGTCTCCGGCCAAATCACCACAGCTTCGCCTTAGAGTGAAGTCTCATCTTCCTCCCACGTCTAGAAAAGCAACGCTGGAGTGCTCTGCTGCAGTCAAATCAATGAGGCGCCACCGCACTACTACGCGAAACCGACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

24.25

Weight (kDa)

10.2

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 663
AccI GTMKAC 1 cut(s) 508
AccII CGCG 1 cut(s) 682
AciI CCGC 3 cut(s) 483, 497, 670
AclWI GGATC 3 cut(s) 256, 262, 553
AcoI YGGCCR 1 cut(s) 564
AcyI GRCGYC 2 cut(s) 494, 664
AfiI CCNNNNNNNGG 3 cut(s) 94, 180, 404
AgsI TTSAA 1 cut(s) 232
AhdI GACNNNNNGTC 1 cut(s) 133
AjiI CACGTC 1 cut(s) 615
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 59, 293, 580
AluI AGCT 3 cut(s) 59, 293, 580
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 564, 603
AlwI GGATC 3 cut(s) 256, 262, 553
AoxI GGCC 2 cut(s) 272, 564
ApeKI GCWGC 2 cut(s) 56, 644
AspLEI GCGC 2 cut(s) 463, 666
AspS9I GGNCC 2 cut(s) 101, 272
AsuC2I CCSGG 2 cut(s) 48, 329
AsuHPI GGTGA 4 cut(s) 46, 95, 224, 564
AvaII GGWCC 1 cut(s) 101
BanI GGYRCC 1 cut(s) 663
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 2 cut(s) 68, 631
BccI CCATC 2 cut(s) 30, 92
BclI TGATCA 1 cut(s) 265
BcnI CCSGG 2 cut(s) 48, 329
BcoDI GTCTC 2 cut(s) 564, 603
BfaI CTAG 2 cut(s) 464, 618
BfmI CTRYAG 1 cut(s) 645
BfoI RGCGCY 2 cut(s) 464, 667
BisI GCNGC 3 cut(s) 57, 497, 645
BlsI GCNGC 3 cut(s) 58, 498, 646
Bme1390I CCNGG 2 cut(s) 48, 329
Bme18I GGWCC 1 cut(s) 101
BmeRI GACNNNNNGTC 1 cut(s) 133
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 2 cut(s) 101, 272
BmiI GGNNCC 2 cut(s) 69, 665
BmrFI CCNGG 2 cut(s) 48, 329
BmrI ACTGGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 21
BpiI GAAGAC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 653
BpuMI CCSGG 2 cut(s) 48, 329
BsaBI GATNNNNATC 2 cut(s) 247, 253
BsaHI GRCGYC 2 cut(s) 494, 664
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 180, 404
Bse1I ACTGG 2 cut(s) 27, 69
Bse8I GATNNNNATC 2 cut(s) 247, 253
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 4 cut(s) 22, 103, 363, 434
BseJI GATNNNNATC 2 cut(s) 247, 253
BseLI CCNNNNNNNGG 3 cut(s) 94, 180, 404
BseNI ACTGG 2 cut(s) 27, 69
BseXI GCAGC 2 cut(s) 68, 631
BsgI GTGCAG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 682
BshFI GGCC 2 cut(s) 274, 566
BshNI GGYRCC 1 cut(s) 663
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 3 cut(s) 47, 329, 563
BslI CCNNNNNNNGG 3 cut(s) 94, 180, 404
BsmAI GTCTC 2 cut(s) 564, 603
BsmBI CGTCTC 1 cut(s) 564
BsnI GGCC 2 cut(s) 274, 566
Bsp1286I GDGCHC 1 cut(s) 641
Bsp143I GATC 4 cut(s) 248, 254, 265, 545
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 3 cut(s) 483, 497, 670
BspANI GGCC 2 cut(s) 274, 566
BspFNI CGCG 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 69, 665
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 3 cut(s) 256, 262, 553
BspQI GCTCTTC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 663
BsrI ACTGG 2 cut(s) 27, 69
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 4 cut(s) 248, 254, 265, 545
BssNI GRCGYC 2 cut(s) 494, 664
BssT1I CCWWGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 2 cut(s) 144, 344
BstACI GRCGYC 2 cut(s) 494, 664
BstC8I GCNNGC 1 cut(s) 410
BstDEI CTNAG 1 cut(s) 587
BstDSI CCRYGG 1 cut(s) 174
BstEII GGTNACC 1 cut(s) 83
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 4 cut(s) 22, 103, 363, 434
BstFNI CGCG 1 cut(s) 682
BstH2I RGCGCY 2 cut(s) 464, 667
BstHHI GCGC 2 cut(s) 463, 666
BstKTI GATC 4 cut(s) 251, 257, 268, 548
BstMAI GTCTC 2 cut(s) 564, 603
BstMBI GATC 4 cut(s) 248, 254, 265, 545
BstNSI RCATGY 1 cut(s) 317
BstPI GGTNACC 1 cut(s) 83
BstSCI CCNGG 2 cut(s) 46, 327
BstSFI CTRYAG 1 cut(s) 645
BstUI CGCG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 68, 631
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 3 cut(s) 248, 254, 545
BstXI CCANNNNNNTGG 2 cut(s) 29, 79
BstYI RGATCY 3 cut(s) 248, 254, 545
BsuRI GGCC 2 cut(s) 274, 566
BtgI CCRYGG 1 cut(s) 174
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 4 cut(s) 22, 103, 363, 434
BtsIMutI CAGTG 2 cut(s) 34, 481
Cac8I GCNNGC 1 cut(s) 410
CfoI GCGC 2 cut(s) 463, 666
Cfr13I GGNCC 2 cut(s) 101, 272
CseI GACGC 1 cut(s) 502
CviAII CATG 2 cut(s) 175, 314
CviJI RGCY 9 cut(s) 14, 59, 274, 293, 327, 393, 408, 566, 580
CviKI_1 RGCY 9 cut(s) 14, 59, 274, 293, 327, 393, 408, 566, 580
DdeI CTNAG 1 cut(s) 587
DinI GGCGCC 1 cut(s) 665
DpnI GATC 4 cut(s) 250, 256, 267, 547
DpnII GATC 4 cut(s) 248, 254, 265, 545
DriI GACNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 1 cut(s) 564
Eam1104I CTCTTC 2 cut(s) 144, 344
Eam1105I GACNNNNNGTC 1 cut(s) 133
EarI CTCTTC 2 cut(s) 144, 344
Eco130I CCWWGG 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 101
Eco91I GGTNACC 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoO109I RGGNCCY 1 cut(s) 272
EcoO65I GGTNACC 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 174
EgeI GGCGCC 1 cut(s) 665
EheI GGCGCC 1 cut(s) 665
ErhI CCWWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 2 cut(s) 178, 317
FaiI YATR 2 cut(s) 176, 315
FatI CATG 2 cut(s) 174, 313
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 3 cut(s) 57, 497, 645
FokI GGATG 4 cut(s) 9, 110, 370, 421
Fsp4HI GCNGC 3 cut(s) 57, 497, 645
FspBI CTAG 2 cut(s) 464, 618
GlaI GCGC 2 cut(s) 462, 665
GluI GCNGC 3 cut(s) 57, 497, 645
GsuI CTGGAG 1 cut(s) 653
HaeII RGCGCY 2 cut(s) 464, 667
HaeIII GGCC 2 cut(s) 274, 566
HapII CCGG 3 cut(s) 47, 329, 563
HgaI GACGC 1 cut(s) 502
HhaI GCGC 2 cut(s) 463, 666
Hin1I GRCGYC 2 cut(s) 494, 664
Hin1II CATG 2 cut(s) 178, 317
Hin6I GCGC 2 cut(s) 461, 664
HinP1I GCGC 2 cut(s) 461, 664
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 4 cut(s) 128, 281, 332, 690
HpaII CCGG 3 cut(s) 47, 329, 563
HphI GGTGA 4 cut(s) 46, 95, 224, 564
Hpy166II GTNNAC 2 cut(s) 127, 509
Hpy188I TCNGA 3 cut(s) 348, 552, 695
Hpy188III TCNNGA 4 cut(s) 252, 490, 543, 618
Hpy8I GTNNAC 2 cut(s) 127, 509
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 614
HpyCH4V TGCA 5 cut(s) 56, 169, 310, 412, 647
HpyF3I CTNAG 1 cut(s) 587
HpySE526I ACGT 1 cut(s) 614
Hsp92I GRCGYC 2 cut(s) 494, 664
Hsp92II CATG 2 cut(s) 178, 317
HspAI GCGC 2 cut(s) 461, 664
KasI GGCGCC 1 cut(s) 663
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 4 cut(s) 248, 254, 265, 545
LguI GCTCTTC 1 cut(s) 344
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 2 cut(s) 68, 631
LweI GCATC 1 cut(s) 177
MaeI CTAG 2 cut(s) 464, 618
MaeII ACGT 1 cut(s) 614
MaeIII GTNAC 3 cut(s) 16, 83, 217
MalI GATC 4 cut(s) 250, 256, 267, 547
MboI GATC 4 cut(s) 248, 254, 265, 545
MboII GAAGA 5 cut(s) 161, 244, 361, 423, 596
MflI RGATCY 3 cut(s) 248, 254, 545
MhlI GDGCHC 1 cut(s) 641
Mly113I GGCGCC 1 cut(s) 664
MlyI GAGTC 3 cut(s) 122, 275, 684
MmeI TCCRAC 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 3 cut(s) 47, 329, 563
MspR9I CCNGG 2 cut(s) 48, 329
MvnI CGCG 1 cut(s) 682
NarI GGCGCC 1 cut(s) 664
NciI CCSGG 2 cut(s) 48, 329
NcoI CCATGG 1 cut(s) 174
NdeII GATC 4 cut(s) 248, 254, 265, 545
NlaIII CATG 2 cut(s) 178, 317
NlaIV GGNNCC 2 cut(s) 69, 665
NmuCI GTSAC 2 cut(s) 83, 217
NspI RCATGY 1 cut(s) 317
PciSI GCTCTTC 1 cut(s) 344
PcsI WCGNNNNNNNCGW 1 cut(s) 548
PfeI GAWTC 1 cut(s) 332
PkrI GCNGC 3 cut(s) 58, 498, 646
PleI GAGTC 3 cut(s) 122, 275, 684
PluTI GGCGCC 1 cut(s) 667
PpsI GAGTC 3 cut(s) 122, 275, 684
PspEI GGTNACC 1 cut(s) 83
PspN4I GGNNCC 2 cut(s) 69, 665
PspPI GGNCC 2 cut(s) 101, 272
PstI CTGCAG 1 cut(s) 649
PsuI RGATCY 3 cut(s) 248, 254, 545
RseI CAYNNNNRTG 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 344
SatI GCNGC 3 cut(s) 57, 497, 645
Sau3AI GATC 4 cut(s) 248, 254, 265, 545
Sau96I GGNCC 2 cut(s) 101, 272
SchI GAGTC 3 cut(s) 122, 275, 684
ScrFI CCNGG 2 cut(s) 48, 329
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 645
SfoI GGCGCC 1 cut(s) 665
SinI GGWCC 1 cut(s) 101
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 3 cut(s) 483, 497, 670
SspDI GGCGCC 1 cut(s) 663
SspMI CTAG 2 cut(s) 464, 618
StyD4I CCNGG 2 cut(s) 46, 327
StyI CCWWGG 1 cut(s) 174
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 617
TaqI TCGA 1 cut(s) 185
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 1 cut(s) 332
TscAI CASTG 2 cut(s) 34, 481
TseFI GTSAC 2 cut(s) 83, 217
TseI GCWGC 2 cut(s) 56, 644
Tsp45I GTSAC 2 cut(s) 83, 217
TspDTI ATGAA 1 cut(s) 423
TspRI CASTG 2 cut(s) 34, 481
VpaK11BI GGWCC 1 cut(s) 101
XagI CCTNNNNNAGG 1 cut(s) 402
XbaI TCTAGA 1 cut(s) 617
XceI RCATGY 1 cut(s) 317
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 2 cut(s) 464, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.