Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

70873774 .. 70874597

Gene Structure 824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG513600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATCGAGTAATGCAGGCACCGTACGATGCTACCGTTCGATTCGCGCTGGCGTCACTAGAGAGGAATCTGTTACCTGACGCCGTTATAAGGCGGTTGACGCGCTTGCTCTTAGCGAGTCGGCTACGCTCCGGTTACCGGCCTTCCTCTGAGCTCCAGCTCTCCCAACTCCTCCAGTTCGTAAAGTCTCTAAAAGAGATGCCAATAGCTATCAAGACTGATGACGCTAAAGCTCAACACTATGAAGTACCCACTTCTTTCTTCAAGATGGTGCTTGGGAACAACCTCAAATATAGTTGCTGTTACTTCACTGATAAGTCAAGCAGCTTGGAGGATGCGGAGAAGGCCATGTTGGAGATGTACTGTGAAAGATCGCAGATTAAAGATGGCCATACTGTTCTTGATGTTGGATGTGGATGGGGATCACTATCTCTGTACATTGCACAGAAATATAAGAATTGCAGGGTTACTGGGATCTGCAATTCAGCAACACAGAAGGCTTTTATAGAAGAGCAGTGTAGGAATCGTCGGCTGGAGAATGGAGATCATTGTTGCAGATATCAGCACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CMAS

Protein Analysis

190

Amino Acids

21.78

Weight (kDa)

8.84

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CMAS	PF02353	75 - 179	1.6e-25	Mycolic acid cyclopropane synthetase
Methyltransf_25	PF13649	133 - 178	1.3e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AccB1I	GGYRCC	1 cut(s)	19
AccII	CGCG	2 cut(s)	47, 103
AciI	CCGC	2 cut(s)	94, 338
AclWI	GGATC	3 cut(s)	12, 430, 482
AcoI	YGGCCR	1 cut(s)	388
AcyI	GRCGYC	2 cut(s)	53, 81
AfaI	GTAC	4 cut(s)	26, 249, 362, 437
AfiI	CCNNNNNNNGG	2 cut(s)	90, 138
AgsI	TTSAA	1 cut(s)	265
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AluBI	AGCT	5 cut(s)	154, 160, 209, 233, 327
AluI	AGCT	5 cut(s)	154, 160, 209, 233, 327
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	3 cut(s)	12, 430, 482
AoxI	GGCC	3 cut(s)	140, 345, 388
ApeKI	GCWGC	1 cut(s)	324
AspLEI	GCGC	2 cut(s)	49, 105
BalI	TGGCCA	1 cut(s)	390
BanI	GGYRCC	1 cut(s)	19
BanII	GRGCYC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	3 cut(s)	262, 380, 411
BceAI	ACGGC	1 cut(s)	68
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
BmiI	GGNNCC	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	480
BmsI	GCATC	3 cut(s)	19, 189, 325
BmuI	ACTGGG	1 cut(s)	480
BpmI	CTGGAG	3 cut(s)	140, 158, 554
BsaBI	GATNNNNATC	2 cut(s)	421, 427
BsaHI	GRCGYC	2 cut(s)	53, 81
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 138
Bse118I	RCCGGY	1 cut(s)	138
Bse1I	ACTGG	2 cut(s)	175, 475
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	2 cut(s)	421, 427
BseGI	GGATG	3 cut(s)	340, 416, 422
BseJI	GATNNNNATC	2 cut(s)	421, 427
BseLI	CCNNNNNNNGG	2 cut(s)	90, 138
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	2 cut(s)	175, 475
BseRI	GAGGAG	1 cut(s)	161
BseXI	GCAGC	1 cut(s)	336
Bsh1236I	CGCG	2 cut(s)	47, 103
BshFI	GGCC	3 cut(s)	142, 347, 390
BshNI	GGYRCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	132, 139
BsiWI	CGTACG	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	90, 138
BsmAI	GTCTC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	142, 347, 390
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	5 cut(s)	4, 371, 422, 474, 544
BspACI	CCGC	2 cut(s)	94, 338
BspANI	GGCC	3 cut(s)	142, 347, 390
BspCNI	CTCAG	1 cut(s)	142
BspFNI	CGCG	2 cut(s)	47, 103
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	3 cut(s)	12, 430, 482
BspQI	GCTCTTC	1 cut(s)	504
BspT107I	GGYRCC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	438
BsrFI	RCCGGY	1 cut(s)	138
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	175, 475
BssAI	RCCGGY	1 cut(s)	138
BssMI	GATC	5 cut(s)	4, 371, 422, 474, 544
BssNI	GRCGYC	2 cut(s)	53, 81
Bst4CI	ACNGT	4 cut(s)	24, 37, 365, 397
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	2 cut(s)	53, 81
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	3 cut(s)	18, 51, 107
BstDEI	CTNAG	2 cut(s)	112, 150
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	340, 416, 422
BstFNI	CGCG	2 cut(s)	47, 103
BstHHI	GCGC	2 cut(s)	49, 105
BstKTI	GATC	5 cut(s)	7, 374, 425, 477, 547
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	5 cut(s)	4, 371, 422, 474, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 344
BstPI	GGTNACC	1 cut(s)	134
BstUI	CGCG	2 cut(s)	47, 103
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	3 cut(s)	142, 347, 390
BtsCI	GGATG	3 cut(s)	340, 416, 422
BtsI	GCAGTG	1 cut(s)	521
BtsIMutI	CAGTG	2 cut(s)	309, 521
Cac8I	GCNNGC	3 cut(s)	18, 51, 107
CfoI	GCGC	2 cut(s)	49, 105
Cfr10I	RCCGGY	1 cut(s)	138
CseI	GACGC	4 cut(s)	42, 89, 109, 233
Csp6I	GTAC	4 cut(s)	25, 248, 361, 436
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	4 cut(s)	25, 248, 361, 436
DdeI	CTNAG	2 cut(s)	112, 150
DpnI	GATC	5 cut(s)	6, 373, 424, 476, 546
DpnII	GATC	5 cut(s)	4, 371, 422, 474, 544
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	560
Eco53kI	GAGCTC	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	154
EcoO65I	GGTNACC	1 cut(s)	134
EcoRV	GATATC	1 cut(s)	560
EcoT38I	GRGCYC	1 cut(s)	156
FaeI	CATG	1 cut(s)	352
FaiI	YATR	7 cut(s)	89, 243, 294, 350, 393, 453, 506
FatI	CATG	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	3 cut(s)	347, 423, 429
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	2 cut(s)	48, 104
GluI	GCNGC	1 cut(s)	325
GsuI	CTGGAG	3 cut(s)	140, 158, 554
HaeIII	GGCC	3 cut(s)	142, 347, 390
HapII	CCGG	2 cut(s)	132, 139
HgaI	GACGC	4 cut(s)	42, 89, 109, 233
HhaI	GCGC	2 cut(s)	49, 105
Hin1I	GRCGYC	2 cut(s)	53, 81
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	2 cut(s)	47, 103
HinP1I	GCGC	2 cut(s)	47, 103
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	4 cut(s)	42, 67, 118, 523
HpaII	CCGG	2 cut(s)	132, 139
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	1 cut(s)	151
Hpy188III	TCNNGA	3 cut(s)	214, 265, 401
Hpy8I	GTNNAC	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	531
HpyAV	CCTTC	3 cut(s)	153, 337, 490
HpyCH4III	ACNGT	4 cut(s)	24, 37, 365, 397
HpyCH4V	TGCA	5 cut(s)	16, 443, 462, 480, 555
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 344
HpyF3I	CTNAG	2 cut(s)	112, 150
Hsp92I	GRCGYC	2 cut(s)	53, 81
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	2 cut(s)	47, 103
Kzo9I	GATC	5 cut(s)	4, 371, 422, 474, 544
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	2 cut(s)	134, 159
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	3 cut(s)	19, 189, 325
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	5 cut(s)	54, 72, 134, 302, 466
MalI	GATC	5 cut(s)	6, 373, 424, 476, 546
MboI	GATC	5 cut(s)	4, 371, 422, 474, 544
MboII	GAAGA	2 cut(s)	253, 521
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	2 cut(s)	457, 481
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	333, 388
MnlI	CCTC	5 cut(s)	57, 157, 182, 296, 325
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
MseI	TTAA	1 cut(s)	381
Msp20I	TGGCCA	1 cut(s)	390
MspI	CCGG	2 cut(s)	132, 139
MvnI	CGCG	2 cut(s)	47, 103
MwoI	GCNNNNNNNGC	2 cut(s)	100, 344
NdeII	GATC	5 cut(s)	4, 371, 422, 474, 544
NlaIII	CATG	1 cut(s)	352
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	42, 67, 523
Pfl23II	CGTACG	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	326
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PsiI	TTATAA	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	156
PspEI	GGTNACC	1 cut(s)	134
PspLI	CGTACG	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	474
RsaI	GTAC	4 cut(s)	26, 249, 362, 437
RsaNI	GTAC	4 cut(s)	25, 248, 361, 436
SacI	GAGCTC	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	5 cut(s)	4, 371, 422, 474, 544
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	7 cut(s)	79, 156, 162, 211, 235, 288, 329
SfaNI	GCATC	3 cut(s)	19, 189, 325
Sse9I	AATT	2 cut(s)	457, 481
SsiI	CCGC	2 cut(s)	94, 338
SspMI	CTAG	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	156
TaaI	ACNGT	4 cut(s)	24, 37, 365, 397
TaqI	TCGA	2 cut(s)	7, 40
TasI	AATT	2 cut(s)	457, 481
TatI	WGTACW	2 cut(s)	360, 435
TfiI	GAWTC	3 cut(s)	42, 67, 523
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	2 cut(s)	316, 521
TseFI	GTSAC	1 cut(s)	54
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	54
TspDTI	ATGAA	1 cut(s)	258
TspRI	CASTG	2 cut(s)	316, 521
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.