Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

21411222 .. 21414613

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG138900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAAGGTTACTCCGGCAGAGATAGGAGAGCAGTTACTGAAGAATGAGGAGCCTGAAGGTGCATTGAGAGACCTACTTGAGTTCCTTGAGAGGAAGAATAGAGCAATTGAGGAAGCTGCAAGTGTAGAGGTAGTGACTTGGAAATTGGCTACGGCCTTGGCCATCGGAGGTGATGAGGCTCAGCGTGACACAGTGGTGGATCCTTTCCCAGAGCCCGTCTATCACTTCTTGGTCGAACGTCTCATCTTTGTCGACATTACTGTCATCCTGGCGTACCGCTTTTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006996 GO:0007005 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017004 GO:0017062 GO:0017111 GO:0019866 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033108 GO:0034551 GO:0034622 GO:0042623 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA AAA_assoc

Protein Analysis

96

Amino Acids

10.84

Weight (kDa)

4.55

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_lid_At3g28540	PF25568	2 - 38	1.7e-06	At3g28540-like, AAA+ ATPase lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	2 cut(s)	194, 207
AcoI	YGGCCR	1 cut(s)	159
AcuI	CTGAAG	2 cut(s)	59, 75
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	283
AjnI	CCWGG	1 cut(s)	267
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	63, 245
AlwI	GGATC	2 cut(s)	194, 207
AlwNI	CAGNNNCTG	1 cut(s)	37
AoxI	GGCC	2 cut(s)	153, 159
ApeKI	GCWGC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	161
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	216
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	63, 245
BisI	GCNGC	1 cut(s)	117
BlpI	GCTNAGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	2 cut(s)	51, 201
BmrFI	CCNGG	1 cut(s)	269
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	98, 107
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	264
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	2 cut(s)	155, 161
BsiSI	CCGG	1 cut(s)	14
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	2 cut(s)	63, 245
BsmBI	CGTCTC	1 cut(s)	245
BsnI	GGCC	2 cut(s)	155, 161
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	199
Bsp1720I	GCTNAGC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	277
BspANI	GGCC	2 cut(s)	155, 161
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	51, 201
BspPI	GGATC	2 cut(s)	194, 207
BspTNI	GGTCTC	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	1 cut(s)	199
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	2 cut(s)	193, 262
BstDEI	CTNAG	2 cut(s)	180, 288
BstF5I	GGATG	1 cut(s)	264
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	63, 245
BstMBI	GATC	1 cut(s)	199
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	1 cut(s)	199
BstYI	RGATCY	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	155, 161
BtsCI	GGATG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	37
Csp6I	GTAC	1 cut(s)	274
CviJI	RGCY	8 cut(s)	52, 116, 149, 155, 161, 179, 214, 287
CviKI_1	RGCY	8 cut(s)	52, 116, 149, 155, 161, 179, 214, 287
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	2 cut(s)	180, 288
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
DrdI	GACNNNNNNGTC	1 cut(s)	260
DseDI	GACNNNNNNGTC	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	216
Eco31I	GGTCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	59, 75
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	251
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	2 cut(s)	155, 161
HapII	CCGG	1 cut(s)	14
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	14
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	50
HpyCH4III	ACNGT	2 cut(s)	193, 262
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	62, 119
HpyF3I	CTNAG	2 cut(s)	180, 288
HpySE526I	ACGT	1 cut(s)	238
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	27, 66, 222, 254, 281
Lsp1109I	GCAGC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	4 cut(s)	7, 33, 133, 185
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	52, 106
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	199
MhlI	GDGCHC	1 cut(s)	216
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	2 cut(s)	105, 143
MluNI	TGGCCA	1 cut(s)	161
MnlI	CCTC	6 cut(s)	40, 84, 103, 121, 161, 169
Mox20I	TGGCCA	1 cut(s)	161
MscI	TGGCCA	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	194
Msp20I	TGGCCA	1 cut(s)	161
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	269
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	269
NdeII	GATC	1 cut(s)	199
NlaIV	GGNNCC	2 cut(s)	51, 201
NmuCI	GTSAC	2 cut(s)	133, 185
OliI	CACNNNNGTG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	51, 201
PstNI	CAGNNNCTG	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	199
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	194
SalI	GTCGAC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	199
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	216
SetI	ASST	7 cut(s)	9, 61, 75, 118, 132, 172, 241
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	2 cut(s)	77, 86
SmoI	CTYRAG	2 cut(s)	77, 86
Sse9I	AATT	2 cut(s)	105, 143
SsiI	CCGC	1 cut(s)	277
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	193, 262
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	2 cut(s)	234, 252
TasI	AATT	2 cut(s)	105, 143
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	2 cut(s)	133, 185
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	2 cut(s)	133, 185
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	198
XmiI	GTMKAC	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.