Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

30348812 .. 30349751

Gene Structure 940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCCGGTGTTAAGGATGTGACTTCAAAGCTTGCTGCGGCCCTAGCTATTAGGGGAGACGAGTTCCACAGTGAGGATCCTGTGGTAGACTCGACGGATCCAACCTACCTTTGGTTGGTGGGCCGTCTGGTCTCGATGGAGCCAACAAAGGCGGCGACGCACCGTTTCATGGAGCAAATTGGGAGTGTTGTTTTGCAGGGTGGTTCATCTATAGTAGTAGAGAATGTAGCTTGTCCCAGTAGGGTGAGTGTGCCACCGGGTTTTGCTGCCTTACCCAATCCAAAGGAGGTCGGTGATCACTCTGGGGTTGGGCCTCTCTTGTTGGAAGGGAAGACGAGTTCATTGCCTCTTGGATCGAAGGACAATGTTGATGAGACGCAGACCATGGTTAGATCGACGCTGGGCAAAAGGGGTGGAGGAGGAGAAGTTACCTCCCTATTGAAAAAAAGGTGTTTGGGGCTTGGTGTTGATTCAGGGATTAAAGGCTCACCTGGGGCTTCAGTGGGTAGTGTGCATTCTGATGCTCTTAGCCTGGATTCCTCGGGTCATCGGAAGCGCAGGATGGATGCTTCTACCTTCAGTTTTGGTATGAAGACCTCTCCTACAAAGGGTCTGCAATTTGAGGTAGGGAAGTCTTCATCCCCCACGGATGCTGCAAAGCGTCGTGCATTGCTCGCTAGGCTTGAGGAGGAGGCTTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

24.43

Weight (kDa)

8.53

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	87
AciI	CCGC	2 cut(s)	38, 152
AclWI	GGATC	5 cut(s)	71, 84, 92, 105, 361
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	483, 562
AfiI	CCNNNNNNNGG	5 cut(s)	73, 111, 115, 169, 608
AgsI	TTSAA	2 cut(s)	27, 442
AjnI	CCWGG	2 cut(s)	490, 531
AloI	GAACNNNNNNTCC	2 cut(s)	322, 354
AluBI	AGCT	3 cut(s)	31, 47, 230
AluI	AGCT	3 cut(s)	31, 47, 230
Alw26I	GTCTC	3 cut(s)	51, 136, 368
AlwI	GGATC	5 cut(s)	71, 84, 92, 105, 361
Ama87I	CYCGRG	1 cut(s)	541
AoxI	GGCC	4 cut(s)	3, 39, 121, 311
ApeKI	GCWGC	3 cut(s)	35, 266, 653
AspLEI	GCGC	1 cut(s)	558
AspS9I	GGNCC	3 cut(s)	40, 121, 311
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	256, 305, 480
AvaI	CYCGRG	1 cut(s)	541
BamHI	GGATCC	2 cut(s)	76, 97
BbsI	GAAGAC	3 cut(s)	338, 599, 627
BbvI	GCAGC	3 cut(s)	22, 253, 640
BccI	CCATC	2 cut(s)	130, 556
BceAI	ACGGC	1 cut(s)	108
BcgI	CGANNNNNNTGC	2 cut(s)	325, 359
BciT130I	CCWGG	2 cut(s)	492, 533
BclI	TGATCA	1 cut(s)	295
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	3 cut(s)	51, 136, 368
BfaI	CTAG	2 cut(s)	44, 678
BfmI	CTRYAG	1 cut(s)	210
BisI	GCNGC	5 cut(s)	36, 39, 153, 267, 654
BlsI	GCNGC	5 cut(s)	37, 40, 154, 268, 655
Bme1390I	CCNGG	3 cut(s)	258, 492, 533
BmeT110I	CYCGRG	1 cut(s)	541
BmgT120I	GGNCC	3 cut(s)	40, 121, 311
BmiI	GGNNCC	3 cut(s)	78, 99, 141
BmrFI	CCNGG	3 cut(s)	258, 492, 533
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	3 cut(s)	511, 556, 640
BmuI	ACTGGG	1 cut(s)	231
BpiI	GAAGAC	3 cut(s)	338, 599, 627
BpuEI	CTTGAG	1 cut(s)	704
BpuMI	CCSGG	1 cut(s)	258
BsaI	GGTCTC	1 cut(s)	136
BsaJI	CCNNGG	4 cut(s)	384, 491, 540, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 111, 115, 169, 608
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	341, 668
BseBI	CCWGG	2 cut(s)	492, 533
BseDI	CCNNGG	4 cut(s)	384, 491, 540, 645
BseGI	GGATG	5 cut(s)	22, 567, 571, 638, 655
BseLI	CCNNNNNNNGG	5 cut(s)	73, 111, 115, 169, 608
BseMI	GCAATG	2 cut(s)	341, 668
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	4 cut(s)	432, 435, 701, 704
BseXI	GCAGC	3 cut(s)	22, 253, 640
BseYI	CCCAGC	1 cut(s)	400
BshFI	GGCC	4 cut(s)	5, 41, 123, 313
BsiHKCI	CYCGRG	1 cut(s)	541
BsiSI	CCGG	2 cut(s)	6, 257
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	5 cut(s)	73, 111, 115, 169, 608
BsmAI	GTCTC	3 cut(s)	51, 136, 368
BsmBI	CGTCTC	2 cut(s)	51, 368
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	4 cut(s)	5, 41, 123, 313
Bso31I	GGTCTC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	76, 97, 295, 353, 392
Bsp19I	CCATGG	1 cut(s)	384
BspACI	CCGC	2 cut(s)	38, 152
BspANI	GGCC	4 cut(s)	5, 41, 123, 313
BspLI	GGNNCC	3 cut(s)	78, 99, 141
BspPI	GGATC	5 cut(s)	71, 84, 92, 105, 361
BspTNI	GGTCTC	1 cut(s)	136
BsrDI	GCAATG	2 cut(s)	341, 668
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	4 cut(s)	384, 491, 540, 645
BssMI	GATC	5 cut(s)	76, 97, 295, 353, 392
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	492, 533
Bst4CI	ACNGT	2 cut(s)	71, 164
BstC8I	GCNNGC	2 cut(s)	33, 675
BstDEI	CTNAG	1 cut(s)	527
BstDSI	CCRYGG	2 cut(s)	384, 645
BstF5I	GGATG	5 cut(s)	22, 567, 571, 638, 655
BstHHI	GCGC	1 cut(s)	558
BstKTI	GATC	5 cut(s)	79, 100, 298, 356, 395
BstMAI	GTCTC	3 cut(s)	51, 136, 368
BstMBI	GATC	5 cut(s)	76, 97, 295, 353, 392
BstMWI	GCNNNNNNNGC	3 cut(s)	44, 674, 679
BstNI	CCWGG	2 cut(s)	492, 533
BstSCI	CCNGG	3 cut(s)	256, 490, 531
BstSFI	CTRYAG	1 cut(s)	210
BstV1I	GCAGC	3 cut(s)	22, 253, 640
BstV2I	GAAGAC	3 cut(s)	338, 599, 627
BstX2I	RGATCY	2 cut(s)	76, 97
BstYI	RGATCY	2 cut(s)	76, 97
BsuRI	GGCC	4 cut(s)	5, 41, 123, 313
BtgI	CCRYGG	2 cut(s)	384, 645
BtsCI	GGATG	5 cut(s)	22, 567, 571, 638, 655
BtsIMutI	CAGTG	2 cut(s)	76, 507
Cac8I	GCNNGC	2 cut(s)	33, 675
CfoI	GCGC	1 cut(s)	558
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	3 cut(s)	40, 121, 311
CseI	GACGC	4 cut(s)	166, 385, 406, 650
CspCI	CAANNNNNGTGG	2 cut(s)	394, 429
CviAII	CATG	2 cut(s)	169, 385
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	5 cut(s)	78, 99, 297, 355, 394
DpnII	GATC	5 cut(s)	76, 97, 295, 353, 392
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	483, 562
Eco88I	CYCGRG	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	490, 531
EcoT14I	CCWWGG	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
Esp3I	CGTCTC	2 cut(s)	51, 368
FaeI	CATG	2 cut(s)	172, 388
FaiI	YATR	4 cut(s)	170, 212, 386, 590
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	2 cut(s)	168, 384
FbaI	TGATCA	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	87
Fnu4HI	GCNGC	5 cut(s)	36, 39, 153, 267, 654
FokI	GGATG	5 cut(s)	29, 574, 578, 625, 662
Fsp4HI	GCNGC	5 cut(s)	36, 39, 153, 267, 654
FspBI	CTAG	2 cut(s)	44, 678
GlaI	GCGC	1 cut(s)	557
GluI	GCNGC	5 cut(s)	36, 39, 153, 267, 654
GsaI	CCCAGC	1 cut(s)	404
HaeIII	GGCC	4 cut(s)	5, 41, 123, 313
HapII	CCGG	2 cut(s)	6, 257
HgaI	GACGC	4 cut(s)	166, 385, 406, 650
HhaI	GCGC	1 cut(s)	558
Hin1II	CATG	2 cut(s)	172, 388
Hin6I	GCGC	1 cut(s)	556
HinP1I	GCGC	1 cut(s)	556
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	3 cut(s)	89, 470, 536
HpaII	CCGG	2 cut(s)	6, 257
HphI	GGTGA	3 cut(s)	256, 305, 480
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	520, 552
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	88
Hpy99I	CGWCG	4 cut(s)	97, 160, 400, 666
HpyAV	CCTTC	3 cut(s)	320, 352, 586
HpyCH4III	ACNGT	2 cut(s)	71, 164
HpyCH4V	TGCA	5 cut(s)	196, 514, 616, 656, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	44, 674, 679
HpyF3I	CTNAG	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	172, 388
HspAI	GCGC	1 cut(s)	556
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	76, 97, 295, 353, 392
LmnI	GCTCC	3 cut(s)	139, 172, 706
Lsp1109I	GCAGC	3 cut(s)	22, 253, 640
LweI	GCATC	3 cut(s)	511, 556, 640
MaeI	CTAG	2 cut(s)	44, 678
MaeIII	GTNAC	2 cut(s)	19, 427
MalI	GATC	5 cut(s)	78, 99, 297, 355, 394
MboI	GATC	5 cut(s)	76, 97, 295, 353, 392
MboII	GAAGA	3 cut(s)	343, 604, 627
MflI	RGATCY	2 cut(s)	76, 97
MluCI	AATT	2 cut(s)	177, 617
MlyI	GAGTC	1 cut(s)	83
MmeI	TCCRAC	2 cut(s)	125, 303
MseI	TTAA	2 cut(s)	12, 480
MslI	CAYNNNNRTG	1 cut(s)	519
MspI	CCGG	2 cut(s)	6, 257
MspR9I	CCNGG	3 cut(s)	258, 492, 533
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	2 cut(s)	492, 533
MwoI	GCNNNNNNNGC	3 cut(s)	44, 674, 679
NciI	CCSGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	384
NdeII	GATC	5 cut(s)	76, 97, 295, 353, 392
NlaIII	CATG	2 cut(s)	172, 388
NlaIV	GGNNCC	3 cut(s)	78, 99, 141
NmuCI	GTSAC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	470, 536
PkrI	GCNGC	5 cut(s)	37, 40, 154, 268, 655
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	490, 531
PspFI	CCCAGC	1 cut(s)	400
PspGI	CCWGG	2 cut(s)	490, 531
PspN4I	GGNNCC	3 cut(s)	78, 99, 141
PspPI	GGNCC	3 cut(s)	40, 121, 311
PsuI	RGATCY	2 cut(s)	76, 97
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	12, 480
SatI	GCNGC	5 cut(s)	36, 39, 153, 267, 654
Sau3AI	GATC	5 cut(s)	76, 97, 295, 353, 392
Sau96I	GGNCC	3 cut(s)	40, 121, 311
SchI	GAGTC	1 cut(s)	83
ScrFI	CCNGG	3 cut(s)	258, 492, 533
SfaNI	GCATC	3 cut(s)	511, 556, 640
SfcI	CTRYAG	1 cut(s)	210
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
Sse9I	AATT	2 cut(s)	177, 617
SsiI	CCGC	2 cut(s)	38, 152
SspMI	CTAG	2 cut(s)	44, 678
StyD4I	CCNGG	3 cut(s)	256, 490, 531
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	71, 164
TaqI	TCGA	4 cut(s)	92, 134, 356, 395
TasI	AATT	2 cut(s)	177, 617
TauI	GCSGC	2 cut(s)	41, 155
TfiI	GAWTC	2 cut(s)	470, 536
Tru1I	TTAA	2 cut(s)	12, 480
Tru9I	TTAA	2 cut(s)	12, 480
TscAI	CASTG	2 cut(s)	76, 507
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	3 cut(s)	35, 266, 653
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	157, 195, 330, 605, 627
TspGWI	ACGGA	2 cut(s)	110, 662
TspRI	CASTG	2 cut(s)	76, 507
XcmI	CCANNNNNNNNNTGG	1 cut(s)	108
XmiI	GTMKAC	1 cut(s)	87
XspI	CTAG	2 cut(s)	44, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.