Rh7CG182200

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001406
Physical Location & Seq
Reverse (-)
15792652 .. 15793749
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG182200.1

Sequence Viewer

Length: 1098 bp
ATGGTACGTTTGGTGATCCGTGAACGTCCGAACGGTCGATTTCTTTTCCGTTTTGTTAATCCAACGGATAAGCAGCGGGTCTTGGCAAAATCTCCATGGTACTACCGCTCGGCAACTCTGGTTTTAGGGGATTATGATGGGGTGAGCAAAATTATGGATGTGCCTCTTAACCGGTTGCCGATCTGGGTTCAGATAAAAGGGTTGCCGCCGGCCTACACTACACCGACTTGGGCCCGGAAGATTGGGGGGTGTCTGGGTCTGGTTGTTCATGCGGATGAAAGGAGATTGAAGCGGTATGAGGAGGTGAAGGTGTTGGTGGTGGTGAGTCTCGAGTGGCCCCTGCCAATGCATTTCAGGTATTCTTTTTCTGATTCTTTTGCCAAAGAGATTGATCTTGAATACTTGAGTGTGCGGTGTTTGTGTTTGGTGTGTGGGTTCTTTGAGCATGGTGTGGGAGGTTGTGGTGGCCCTTCGACGGAGGAATGGGGTATGGGAGTGGCAGCGGCTTCTTCTGGGGGTGGACAGAGGAGTGTTGTTTTGCAGGGTGGTTCATCTATGGTGGTAGAGAATGTAGCCCGCCCCAGTGGGGTGCGAGTGCCACCGGGTTTTGCTGCTTTACCCGAACCGAAGGAGGTCGGTAATCACTCTGGGGTCAGGCCACTCTTGTTGGAGGGGAAGATGAGCTCACTGCCTCTTGGATCGAAGGACAGTGTTGATGAGGCGCAGACCATGGTTGGATCGACGCTGGGCAAAAGGGGTGGAGGAGGAGAAGTTACCTCCCCATTGAAAAAAGGGCGATTGGGATATGGTGTTGATTCAGGGCTTAAAGGTTCACCTGGGGCTTCAGTGGGGGGTATGCAATATGATGCTATTAGCCCAGACTCTTCGGGTCATCGGAAGCGCAAGGTGGATGCTTCCACTTTCAGTTTTGGTATGAAGACCTCTCCTACAAAGGGTTTGCAGTTTGAGGTAGGGAAGTCTTCATCCCCTACGGATGGTAAGTTAAGGGCTGGGAAGAAACATAAACCAAAGATTCTCTCAGCTGCAAAGCGTCGTGCACTGCTCTCTAGGCTTGAGGAGGAGGCCTCTGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

365

Amino Acids

39.24

Weight (kDa)

9.75

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 4 - 42 2.6e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 108
AciI CCGC 8 cut(s) 76, 106, 206, 272, 292, 412, 503, 577
AclWI GGATC 3 cut(s) 10, 706, 745
AcuI CTGAAG 1 cut(s) 828
AfaI GTAC 2 cut(s) 6, 101
AfiI CCNNNNNNNGG 4 cut(s) 475, 586, 953, 995
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 3 cut(s) 289, 398, 787
AjnI CCWGG 1 cut(s) 835
AluBI AGCT 2 cut(s) 684, 1043
AluI AGCT 2 cut(s) 684, 1043
Alw21I GWGCWC 2 cut(s) 686, 1060
Alw26I GTCTC 1 cut(s) 332
Alw44I GTGCAC 1 cut(s) 1056
AlwI GGATC 3 cut(s) 10, 706, 745
Ama87I CYCGRG 1 cut(s) 329
AoxI GGCC 6 cut(s) 210, 231, 335, 466, 656, 1083
ApaI GGGCCC 1 cut(s) 235
ApaLI GTGCAC 1 cut(s) 1056
ApeKI GCWGC 4 cut(s) 73, 500, 611, 1043
AsiGI ACCGGT 1 cut(s) 171
AspLEI GCGC 2 cut(s) 724, 903
AspS9I GGNCC 4 cut(s) 231, 232, 336, 467
AsuC2I CCSGG 2 cut(s) 235, 603
AsuHPI GGTGA 5 cut(s) 25, 154, 316, 334, 825
AvaI CYCGRG 1 cut(s) 329
BaeGI GKGCMC 2 cut(s) 235, 1060
BanII GRGCYC 2 cut(s) 235, 686
BbsI GAAGAC 2 cut(s) 944, 972
Bbv12I GWGCWC 2 cut(s) 686, 1060
BbvI GCAGC 4 cut(s) 85, 512, 598, 1030
BccI CCATC 2 cut(s) 131, 989
BciT130I CCWGG 1 cut(s) 837
BcnI CCSGG 2 cut(s) 235, 603
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 1068
BisI GCNGC 6 cut(s) 74, 206, 501, 504, 612, 1044
BlsI GCNGC 6 cut(s) 75, 207, 502, 505, 613, 1045
Bme1390I CCNGG 3 cut(s) 235, 603, 837
BmeT110I CYCGRG 1 cut(s) 329
BmgT120I GGNCC 4 cut(s) 231, 232, 336, 467
BmiI GGNNCC 2 cut(s) 233, 338
BmrFI CCNGG 3 cut(s) 235, 603, 837
BmrI ACTGGG 1 cut(s) 576
BmsI GCATC 2 cut(s) 856, 901
BmuI ACTGGG 1 cut(s) 576
BpiI GAAGAC 2 cut(s) 944, 972
BplI GAGNNNNNCTC 1 cut(s) 1070
BpuEI CTTGAG 2 cut(s) 424, 1094
BpuMI CCSGG 2 cut(s) 235, 603
BsaJI CCNNGG 3 cut(s) 95, 729, 836
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 756, 786
Bsc4I CCNNNNNNNGG 4 cut(s) 475, 586, 953, 995
Bse118I RCCGGY 2 cut(s) 171, 208
Bse1I ACTGG 1 cut(s) 582
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 3 cut(s) 95, 729, 836
BseGI GGATG 5 cut(s) 163, 280, 916, 983, 1000
BseLI CCNNNNNNNGG 4 cut(s) 475, 586, 953, 995
BseMII CTCAG 1 cut(s) 1053
BseNI ACTGG 1 cut(s) 582
BseRI GAGGAG 6 cut(s) 314, 541, 777, 780, 1091, 1094
BseSI GKGCMC 2 cut(s) 235, 1060
BseXI GCAGC 4 cut(s) 85, 512, 598, 1030
BseYI CCCAGC 2 cut(s) 745, 1010
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 6 cut(s) 212, 233, 337, 468, 658, 1085
BshTI ACCGGT 1 cut(s) 171
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 2 cut(s) 686, 1060
BsiHKCI CYCGRG 1 cut(s) 329
BsiSI CCGG 4 cut(s) 172, 209, 235, 602
BslI CCNNNNNNNGG 4 cut(s) 475, 586, 953, 995
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 6 cut(s) 212, 233, 337, 468, 658, 1085
BsoBI CYCGRG 1 cut(s) 329
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 3 cut(s) 235, 686, 1060
Bsp143I GATC 5 cut(s) 15, 180, 391, 698, 737
Bsp19I CCATGG 2 cut(s) 95, 729
BspACI CCGC 8 cut(s) 76, 106, 206, 272, 292, 412, 503, 577
BspANI GGCC 6 cut(s) 212, 233, 337, 468, 658, 1085
BspCNI CTCAG 1 cut(s) 1052
BspLI GGNNCC 2 cut(s) 233, 338
BspPI GGATC 3 cut(s) 10, 706, 745
BsrBI CCGCTC 1 cut(s) 108
BsrFI RCCGGY 2 cut(s) 171, 208
BsrI ACTGG 1 cut(s) 582
BssAI RCCGGY 2 cut(s) 171, 208
BssECI CCNNGG 3 cut(s) 95, 729, 836
BssMI GATC 5 cut(s) 15, 180, 391, 698, 737
BssT1I CCWWGG 2 cut(s) 95, 729
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 35, 710
Bst6I CTCTTC 1 cut(s) 889
BstC8I GCNNGC 2 cut(s) 210, 577
BstDEI CTNAG 1 cut(s) 1039
BstDSI CCRYGG 2 cut(s) 95, 729
BstF5I GGATG 5 cut(s) 163, 280, 916, 983, 1000
BstHHI GCGC 2 cut(s) 724, 903
BstKTI GATC 5 cut(s) 18, 183, 394, 701, 740
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 5 cut(s) 15, 180, 391, 698, 737
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 1 cut(s) 1069
BstNI CCWGG 1 cut(s) 837
BstSCI CCNGG 3 cut(s) 233, 601, 835
BstSLI GKGCMC 2 cut(s) 235, 1060
BstV1I GCAGC 4 cut(s) 85, 512, 598, 1030
BstV2I GAAGAC 2 cut(s) 944, 972
BsuRI GGCC 6 cut(s) 212, 233, 337, 468, 658, 1085
BtgI CCRYGG 2 cut(s) 95, 729
BtsCI GGATG 5 cut(s) 163, 280, 916, 983, 1000
BtsI GCAGTG 2 cut(s) 686, 1058
BtsIMutI CAGTG 5 cut(s) 589, 686, 715, 852, 1058
Cac8I GCNNGC 2 cut(s) 210, 577
CfoI GCGC 2 cut(s) 724, 903
Cfr10I RCCGGY 2 cut(s) 171, 208
Cfr13I GGNCC 4 cut(s) 231, 232, 336, 467
CseI GACGC 2 cut(s) 751, 1040
Csp6I GTAC 2 cut(s) 5, 100
CspAI ACCGGT 1 cut(s) 171
CspCI CAANNNNNGTGG 4 cut(s) 648, 683, 739, 774
CviAII CATG 4 cut(s) 96, 269, 446, 730
CviQI GTAC 2 cut(s) 5, 100
DdeI CTNAG 1 cut(s) 1039
DpnI GATC 5 cut(s) 17, 182, 393, 700, 739
DpnII GATC 5 cut(s) 15, 180, 391, 698, 737
Eam1104I CTCTTC 1 cut(s) 889
EarI CTCTTC 1 cut(s) 889
Ecl136II GAGCTC 1 cut(s) 684
Eco130I CCWWGG 2 cut(s) 95, 729
Eco147I AGGCCT 1 cut(s) 1085
Eco24I GRGCYC 2 cut(s) 235, 686
Eco53kI GAGCTC 1 cut(s) 684
Eco57I CTGAAG 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 329
EcoICRI GAGCTC 1 cut(s) 684
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 2 cut(s) 95, 729
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 2 cut(s) 235, 686
ErhI CCWWGG 2 cut(s) 95, 729
FaeI CATG 4 cut(s) 99, 272, 449, 733
FatI CATG 4 cut(s) 95, 268, 445, 729
FauI CCCGC 2 cut(s) 69, 584
Fnu4HI GCNGC 6 cut(s) 74, 206, 501, 504, 612, 1044
FokI GGATG 5 cut(s) 170, 287, 923, 970, 1007
FriOI GRGCYC 2 cut(s) 235, 686
Fsp4HI GCNGC 6 cut(s) 74, 206, 501, 504, 612, 1044
FspBI CTAG 1 cut(s) 1068
GlaI GCGC 2 cut(s) 723, 902
GluI GCNGC 6 cut(s) 74, 206, 501, 504, 612, 1044
GsaI CCCAGC 2 cut(s) 749, 1014
HaeIII GGCC 6 cut(s) 212, 233, 337, 468, 658, 1085
HapII CCGG 4 cut(s) 172, 209, 235, 602
HgaI GACGC 2 cut(s) 751, 1040
HhaI GCGC 2 cut(s) 724, 903
Hin1II CATG 4 cut(s) 99, 272, 449, 733
Hin6I GCGC 2 cut(s) 722, 901
HinP1I GCGC 2 cut(s) 722, 901
HinfI GANTC 5 cut(s) 325, 371, 815, 881, 1033
HpaII CCGG 4 cut(s) 172, 209, 235, 602
HphI GGTGA 5 cut(s) 25, 154, 316, 334, 825
Hpy166II GTNNAC 4 cut(s) 23, 521, 833, 1058
Hpy188I TCNGA 4 cut(s) 30, 192, 370, 897
Hpy188III TCNNGA 2 cut(s) 329, 395
Hpy8I GTNNAC 4 cut(s) 23, 521, 833, 1058
Hpy99I CGWCG 3 cut(s) 478, 745, 1056
HpyAV CCTTC 4 cut(s) 301, 480, 622, 697
HpyCH4III ACNGT 2 cut(s) 35, 710
HpyCH4IV ACGT 2 cut(s) 7, 25
HpyCH4V TGCA 6 cut(s) 349, 541, 859, 961, 1046, 1058
HpyF10VI GCNNNNNNNGC 1 cut(s) 1069
HpyF3I CTNAG 1 cut(s) 1039
HpySE526I ACGT 2 cut(s) 7, 25
Hsp92II CATG 4 cut(s) 99, 272, 449, 733
HspAI GCGC 2 cut(s) 722, 901
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Kzo9I GATC 5 cut(s) 15, 180, 391, 698, 737
LmnI GCTCC 1 cut(s) 1096
Lsp1109I GCAGC 4 cut(s) 85, 512, 598, 1030
LweI GCATC 2 cut(s) 856, 901
MaeI CTAG 1 cut(s) 1068
MaeII ACGT 2 cut(s) 7, 25
MaeIII GTNAC 1 cut(s) 772
MalI GATC 5 cut(s) 17, 182, 393, 700, 739
MbiI CCGCTC 1 cut(s) 108
MboI GATC 5 cut(s) 15, 180, 391, 698, 737
MboII GAAGA 7 cut(s) 250, 501, 688, 876, 949, 972, 1027
MhlI GDGCHC 3 cut(s) 235, 686, 1060
MluCI AATT 1 cut(s) 150
MlyI GAGTC 2 cut(s) 334, 875
MmeI TCCRAC 3 cut(s) 86, 648, 715
Mph1103I ATGCAT 1 cut(s) 351
MroNI GCCGGC 1 cut(s) 208
MseI TTAA 4 cut(s) 57, 168, 825, 1004
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 3 cut(s) 76, 503, 1043
MspI CCGG 4 cut(s) 172, 209, 235, 602
MspR9I CCNGG 3 cut(s) 235, 603, 837
MvaI CCWGG 1 cut(s) 837
MwoI GCNNNNNNNGC 1 cut(s) 1069
NaeI GCCGGC 1 cut(s) 210
NciI CCSGG 2 cut(s) 235, 603
NcoI CCATGG 2 cut(s) 95, 729
NdeII GATC 5 cut(s) 15, 180, 391, 698, 737
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 4 cut(s) 99, 272, 449, 733
NlaIV GGNNCC 2 cut(s) 233, 338
NmeAIII GCCGAG 1 cut(s) 89
NsiI ATGCAT 1 cut(s) 351
PaeR7I CTCGAG 1 cut(s) 329
PceI AGGCCT 1 cut(s) 1085
PdiI GCCGGC 1 cut(s) 210
PfeI GAWTC 3 cut(s) 371, 815, 1033
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 6 cut(s) 75, 207, 502, 505, 613, 1045
PleI GAGTC 2 cut(s) 333, 875
PpsI GAGTC 2 cut(s) 333, 875
Psp124BI GAGCTC 1 cut(s) 686
Psp6I CCWGG 1 cut(s) 835
PspFI CCCAGC 2 cut(s) 745, 1010
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 2 cut(s) 233, 338
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 4 cut(s) 231, 232, 336, 467
PvuII CAGCTG 1 cut(s) 1043
RsaI GTAC 2 cut(s) 6, 101
RsaNI GTAC 2 cut(s) 5, 100
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 686
SaqAI TTAA 4 cut(s) 57, 168, 825, 1004
SatI GCNGC 6 cut(s) 74, 206, 501, 504, 612, 1044
Sau3AI GATC 5 cut(s) 15, 180, 391, 698, 737
Sau96I GGNCC 4 cut(s) 231, 232, 336, 467
SchI GAGTC 2 cut(s) 334, 875
ScrFI CCNGG 3 cut(s) 235, 603, 837
SduI GDGCHC 3 cut(s) 235, 686, 1060
SfaNI GCATC 2 cut(s) 856, 901
Sfr274I CTCGAG 1 cut(s) 329
SlaI CTCGAG 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 273
SmlI CTYRAG 3 cut(s) 329, 403, 1073
SmoI CTYRAG 3 cut(s) 329, 403, 1073
Sse9I AATT 1 cut(s) 150
SseBI AGGCCT 1 cut(s) 1085
SsiI CCGC 8 cut(s) 76, 106, 206, 272, 292, 412, 503, 577
SspMI CTAG 1 cut(s) 1068
SstI GAGCTC 1 cut(s) 686
StuI AGGCCT 1 cut(s) 1085
StyD4I CCNGG 3 cut(s) 233, 601, 835
StyI CCWWGG 2 cut(s) 95, 729
TaaI ACNGT 2 cut(s) 35, 710
TaiI ACGT 2 cut(s) 10, 28
TaqI TCGA 5 cut(s) 37, 330, 473, 701, 740
TasI AATT 1 cut(s) 150
TauI GCSGC 2 cut(s) 208, 506
TfiI GAWTC 3 cut(s) 371, 815, 1033
Tru1I TTAA 4 cut(s) 57, 168, 825, 1004
Tru9I TTAA 4 cut(s) 57, 168, 825, 1004
TscAI CASTG 5 cut(s) 589, 693, 715, 852, 1065
TseI GCWGC 4 cut(s) 73, 500, 611, 1043
TspDTI ATGAA 5 cut(s) 257, 291, 540, 950, 972
TspGWI ACGGA 5 cut(s) 8, 38, 80, 491, 1007
TspRI CASTG 5 cut(s) 589, 693, 715, 852, 1065
VneI GTGCAC 1 cut(s) 1056
XhoI CTCGAG 1 cut(s) 329
XspI CTAG 1 cut(s) 1068
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.