Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Forward (+)

79041741 .. 79043628

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG461800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTGGAAGGGAAGATGGATTCTTGGCCACCGGTGTTGGAGGAAAGTGTTGATGAGGTACAGGTTATGGTTGGGTCAATGCTTGGGAAAAGGGGTGGTGATGGTGAAGTCATGTCTCCATTGAAGAAAGGGAGGTTGAGATCTGGATCTGGTGTTGATCGAGGGCTTAGTGACTCATCTGGAGTTGTTGTGGGAGGTGTGCCATTGGGTCCTGATAGTCCGAATTCCTTGGGTCATCGGAAGCGTAGGATCTCTGCTTCCACTTTCAGTTTTGGGATGAAGGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCCTGCTATTGGTAAGGTTGGGGATGGGAAGAAACATAAACCAAAGCTTATCTCAGCTGCAAAGAGTTGTGCACTACTCTCTCAGCTTGACGATGAGGCCTCTTTTCATTATTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.6

Weight (kDa)

9.44

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	154, 257
AcoI	YGGCCR	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	1 cut(s)	60
AfiI	CCNNNNNNNGG	2 cut(s)	296, 338
AgeI	ACCGGT	1 cut(s)	31
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	3 cut(s)	376, 386, 415
AluI	AGCT	3 cut(s)	376, 386, 415
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	120
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	154, 257
AoxI	GGCC	2 cut(s)	26, 426
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	223
AsiGI	ACCGGT	1 cut(s)	31
AspS9I	GGNCC	1 cut(s)	209
AsuHPI	GGTGA	2 cut(s)	110, 116
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	403
BalI	TGGCCA	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	3 cut(s)	10, 95, 347
BcoDI	GTCTC	1 cut(s)	120
BglII	AGATCT	1 cut(s)	140
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	209
BmiI	GGNNCC	2 cut(s)	210, 286
BpiI	GAAGAC	1 cut(s)	315
BpmI	CTGGAG	1 cut(s)	201
BsaBI	GATNNNNATC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	31
BsaXI	ACNNNNNCTCC	2 cut(s)	174, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 338
Bse118I	RCCGGY	1 cut(s)	31
Bse8I	GATNNNNATC	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	228
BseGI	GGATG	2 cut(s)	282, 358
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	2 cut(s)	296, 338
BseMII	CTCAG	2 cut(s)	396, 425
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	373
BshFI	GGCC	2 cut(s)	28, 428
BshTI	ACCGGT	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	32
BslI	CCNNNNNNNGG	2 cut(s)	296, 338
BsmAI	GTCTC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	28, 428
Bsp1286I	GDGCHC	2 cut(s)	287, 403
Bsp143I	GATC	4 cut(s)	140, 146, 157, 249
BspANI	GGCC	2 cut(s)	28, 428
BspCNI	CTCAG	2 cut(s)	395, 424
BspLI	GGNNCC	2 cut(s)	210, 286
BspPI	GGATC	2 cut(s)	154, 257
BsrFI	RCCGGY	1 cut(s)	31
BssAI	RCCGGY	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	4 cut(s)	140, 146, 157, 249
BssT1I	CCWWGG	1 cut(s)	228
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	3 cut(s)	167, 382, 411
BstENI	CCTNNNNNAGG	1 cut(s)	294
BstF5I	GGATG	2 cut(s)	282, 358
BstKTI	GATC	4 cut(s)	143, 149, 160, 252
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	4 cut(s)	140, 146, 157, 249
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	315
BstX2I	RGATCY	3 cut(s)	140, 146, 249
BstYI	RGATCY	3 cut(s)	140, 146, 249
BsuRI	GGCC	2 cut(s)	28, 428
BtsCI	GGATG	2 cut(s)	282, 358
Cac8I	GCNNGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	31
Cfr13I	GGNCC	1 cut(s)	209
Csp6I	GTAC	1 cut(s)	59
CspAI	ACCGGT	1 cut(s)	31
CspCI	CAANNNNNGTGG	2 cut(s)	18, 53
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	8 cut(s)	28, 166, 285, 300, 376, 386, 415, 428
CviKI_1	RGCY	8 cut(s)	28, 166, 285, 300, 376, 386, 415, 428
CviQI	GTAC	1 cut(s)	59
DdeI	CTNAG	3 cut(s)	167, 382, 411
DpnI	GATC	4 cut(s)	142, 148, 159, 251
DpnII	GATC	4 cut(s)	140, 146, 157, 249
EaeI	YGGCCR	1 cut(s)	26
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	209
EcoNI	CCTNNNNNAGG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	1 cut(s)	115
FaiI	YATR	3 cut(s)	68, 113, 366
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	289, 365
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	387
GluI	GCNGC	1 cut(s)	387
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	2 cut(s)	28, 428
HapII	CCGG	1 cut(s)	32
Hin1II	CATG	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	20, 173
HpaII	CCGG	1 cut(s)	32
HphI	GGTGA	2 cut(s)	110, 116
Hpy166II	GTNNAC	1 cut(s)	401
Hpy188I	TCNGA	2 cut(s)	222, 240
Hpy188III	TCNNGA	3 cut(s)	144, 180, 212
Hpy8I	GTNNAC	1 cut(s)	401
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	304, 389, 401
HpyF3I	CTNAG	3 cut(s)	167, 382, 411
Hsp92II	CATG	1 cut(s)	115
Kzo9I	GATC	4 cut(s)	140, 146, 157, 249
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	45, 47, 129, 135, 165, 225, 345
Lsp1109I	GCAGC	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	4 cut(s)	142, 148, 159, 251
MboI	GATC	4 cut(s)	140, 146, 157, 249
MboII	GAAGA	4 cut(s)	25, 136, 315, 370
MflI	RGATCY	3 cut(s)	140, 146, 249
MhlI	GDGCHC	2 cut(s)	287, 403
MlsI	TGGCCA	1 cut(s)	28
MluCI	AATT	1 cut(s)	223
MluNI	TGGCCA	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	18
MnlI	CCTC	9 cut(s)	34, 49, 126, 155, 188, 304, 337, 418, 439
Mox20I	TGGCCA	1 cut(s)	28
MscI	TGGCCA	1 cut(s)	28
Msp20I	TGGCCA	1 cut(s)	28
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	32
NdeII	GATC	4 cut(s)	140, 146, 157, 249
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	210, 286
NmuCI	GTSAC	1 cut(s)	170
PceI	AGGCCT	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	20
PinAI	ACCGGT	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	388
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	209
Psp5II	RGGWCCY	1 cut(s)	209
PspN4I	GGNNCC	2 cut(s)	210, 286
PspPI	GGNCC	1 cut(s)	209
PspPPI	RGGWCCY	1 cut(s)	209
PsuI	RGATCY	3 cut(s)	140, 146, 249
PvuII	CAGCTG	1 cut(s)	386
RsaI	GTAC	1 cut(s)	60
RsaNI	GTAC	1 cut(s)	59
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	4 cut(s)	140, 146, 157, 249
Sau96I	GGNCC	1 cut(s)	209
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	287, 403
SetI	ASST	9 cut(s)	60, 66, 137, 199, 315, 348, 378, 388, 417
SgrAI	CRCCGGYG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	209
Sse9I	AATT	1 cut(s)	223
SseBI	AGGCCT	1 cut(s)	428
StuI	AGGCCT	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	228
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	223
TfiI	GAWTC	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	293, 425
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	1 cut(s)	209
XagI	CCTNNNNNAGG	1 cut(s)	294
XapI	RAATTY	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.