Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

16773375 .. 16776388

Gene Structure 3014 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG188300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTTGTTTGGTTGCTAGAACAATTTGTCTGAGAAAGTGTTTTGCAAACCAACAGTTTGAACCCAAAAGGCCTTGCGATTTCGGGTTGATGAGTTATCGGGATGTCATTCGTGACATGTCGGTTTCTCATTGGCTCGAGGTCACGGCGCTGTGGGACCCCTCTCTCGGGTCACCACATGTTGATTATGGGTTGCTAACTTCTGATGGTTTGGCAGTTGGGGCTGAGCCTCTACTACCAGTTAGCCCGGATTCTTCTGGACATAGGAAGTGCAGGATGGAGGCTACTTCCTTCAGTTTTGGGTTGAAGGTCTCCCCTACTAAAAGATTGCAATTTGAGGTAAGGAAGACTTCATCACCTATCGGTGGAAAGATGGGGAATGGGAAGAAGCACAAACCTAAGATTCTCTCAGCTGCAAAGTGTCATGCTCTGATATCTAGGCTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

9.51

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	277
AfiI	CCNNNNNNNGG	3 cut(s)	167, 168, 365
AflIII	ACRYGT	2 cut(s)	117, 178
AgsI	TTSAA	3 cut(s)	62, 307, 446
AluBI	AGCT	1 cut(s)	413
AluI	AGCT	1 cut(s)	413
Alw26I	GTCTC	1 cut(s)	316
Ama87I	CYCGRG	2 cut(s)	137, 167
AoxI	GGCC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	413
AspLEI	GCGC	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	157
AsuC2I	CCSGG	1 cut(s)	248
AsuHPI	GGTGA	2 cut(s)	165, 348
AvaI	CYCGRG	2 cut(s)	137, 167
AvaII	GGWCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	353
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	200, 271, 367
BceAI	ACGGC	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	316
BfaI	CTAG	2 cut(s)	18, 438
BfoI	RGCGCY	1 cut(s)	152
BisI	GCNGC	1 cut(s)	414
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	157
BmeT110I	CYCGRG	2 cut(s)	137, 167
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	2 cut(s)	158, 159
BmrFI	CCNGG	1 cut(s)	248
BpiI	GAAGAC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuMI	CCSGG	1 cut(s)	248
BsaI	GGTCTC	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 168, 365
Bse1I	ACTGG	1 cut(s)	239
BseGI	GGATG	2 cut(s)	109, 282
BseLI	CCNNNNNNNGG	3 cut(s)	167, 168, 365
BseMII	CTCAG	3 cut(s)	23, 216, 423
BseNI	ACTGG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	400
BsgI	GTGCAG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	73
BsiHKCI	CYCGRG	2 cut(s)	137, 167
BsiSI	CCGG	1 cut(s)	248
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	167, 168, 365
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	73
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	2 cut(s)	137, 167
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	24, 217, 422
BspLI	GGNNCC	2 cut(s)	158, 159
BspTNI	GGTCTC	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	57
BstDEI	CTNAG	4 cut(s)	32, 225, 399, 409
BstEII	GGTNACC	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	109, 282
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	151
BstMAI	GTCTC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	2 cut(s)	121, 182
BstPI	GGTNACC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	400
BstV2I	GAAGAC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	73
BtsCI	GGATG	2 cut(s)	109, 282
CfoI	GCGC	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	157
CviAII	CATG	3 cut(s)	118, 179, 425
CviJI	RGCY	8 cut(s)	73, 136, 224, 229, 246, 284, 413, 442
CviKI_1	RGCY	8 cut(s)	73, 136, 224, 229, 246, 284, 413, 442
DdeI	CTNAG	4 cut(s)	32, 225, 399, 409
Eco147I	AGGCCT	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	316
Eco32I	GATATC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	277
Eco88I	CYCGRG	2 cut(s)	137, 167
Eco91I	GGTNACC	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	157
EcoO65I	GGTNACC	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	435
FaeI	CATG	3 cut(s)	121, 182, 428
FaiI	YATR	5 cut(s)	119, 180, 189, 264, 426
FalI	AAGNNNNNCTT	2 cut(s)	334, 366
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	3 cut(s)	117, 178, 424
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	2 cut(s)	116, 289
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	18, 438
GlaI	GCGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	152
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	248
HhaI	GCGC	1 cut(s)	151
Hin1II	CATG	3 cut(s)	121, 182, 428
Hin6I	GCGC	1 cut(s)	149
HinP1I	GCGC	1 cut(s)	149
HinfI	GANTC	2 cut(s)	251, 403
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	2 cut(s)	165, 348
Hpy188I	TCNGA	3 cut(s)	33, 205, 432
Hpy188III	TCNNGA	3 cut(s)	101, 113, 258
HpyAV	CCTTC	2 cut(s)	301, 301
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	4 cut(s)	47, 273, 331, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	32, 225, 399, 409
Hsp92II	CATG	3 cut(s)	121, 182, 428
HspAI	GCGC	1 cut(s)	149
KflI	GGGWCCC	1 cut(s)	157
LpnPI	CCDG	4 cut(s)	243, 252, 259, 261
Lsp1109I	GCAGC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	18, 438
MaeIII	GTNAC	3 cut(s)	113, 142, 171
MboII	GAAGA	3 cut(s)	246, 358, 397
MluCI	AATT	2 cut(s)	24, 332
MnlI	CCTC	5 cut(s)	133, 172, 240, 274, 331
MspA1I	CMGCKG	1 cut(s)	413
MspI	CCGG	1 cut(s)	248
MspR9I	CCNGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	248
NlaIII	CATG	3 cut(s)	121, 182, 428
NlaIV	GGNNCC	2 cut(s)	158, 159
NmuCI	GTSAC	3 cut(s)	113, 142, 171
NspI	RCATGY	2 cut(s)	121, 182
PaeR7I	CTCGAG	1 cut(s)	137
PceI	AGGCCT	1 cut(s)	73
PciI	ACATGT	2 cut(s)	117, 178
PfeI	GAWTC	2 cut(s)	251, 403
PkrI	GCNGC	1 cut(s)	415
PpuMI	RGGWCCY	1 cut(s)	157
PscI	ACATGT	2 cut(s)	117, 178
Psp5II	RGGWCCY	1 cut(s)	157
PspEI	GGTNACC	1 cut(s)	171
PspN4I	GGNNCC	2 cut(s)	158, 159
PspPI	GGNCC	1 cut(s)	157
PspPPI	RGGWCCY	1 cut(s)	157
PspXI	VCTCGAGB	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	413
SatI	GCNGC	1 cut(s)	414
Sau96I	GGNCC	1 cut(s)	157
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	6 cut(s)	144, 312, 342, 361, 400, 415
Sfr274I	CTCGAG	1 cut(s)	137
SinI	GGWCC	1 cut(s)	157
SlaI	CTCGAG	1 cut(s)	137
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	2 cut(s)	24, 332
SseBI	AGGCCT	1 cut(s)	73
SspMI	CTAG	2 cut(s)	18, 438
StuI	AGGCCT	1 cut(s)	73
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	24, 332
TfiI	GAWTC	2 cut(s)	251, 403
TseFI	GTSAC	3 cut(s)	113, 142, 171
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	3 cut(s)	113, 142, 171
TspDTI	ATGAA	1 cut(s)	342
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	2 cut(s)	121, 182
XhoI	CTCGAG	1 cut(s)	137
XspI	CTAG	2 cut(s)	18, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.