Rh2BG635500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001406
Physical Location & Seq
Forward (+)
85657542 .. 85658555
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG635500.1

Sequence Viewer

Length: 285 bp
ATGGCCGGAGTACTTAAACTGCAGCGTTTTATTGTTCCTGTACTCGTCCTGAGCTTCATCTTGCTATCTCTGGCCATTGAAGCCCGGCCGATGCATGAGCATGGCTCGAAGATTCATCATCATCGTCATCAGTTTCACCACCACAAGGAGCTGCACAACCACAAGTACAATGGTCACAGGAAGGCTGTACCAAGCCCAGCAGGGGCATTTGGTCAAGGCTTTATTGATCTTCTGACCCTTTGGGGAGTCAAGAGCAGTGGTCCGAGTCCTGGTGCAGGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

10.37

Isoelectric Point (pI)

54.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 3 cut(s) 3, 72, 86
AfaI GTAC 4 cut(s) 12, 42, 167, 189
AfiI CCNNNNNNNGG 4 cut(s) 145, 202, 269, 275
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 2 cut(s) 54, 151
AluI AGCT 2 cut(s) 54, 151
AoxI GGCC 4 cut(s) 3, 72, 86, 277
ApeKI GCWGC 2 cut(s) 22, 151
AspS9I GGNCC 1 cut(s) 260
AsuC2I CCSGG 1 cut(s) 85
AsuHPI GGTGA 1 cut(s) 128
AvaII GGWCC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 74
BbvI GCAGC 2 cut(s) 34, 138
BciT130I CCWGG 1 cut(s) 270
BcnI CCSGG 1 cut(s) 85
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 2 cut(s) 23, 152
BlsI GCNGC 2 cut(s) 24, 153
BmcAI AGTACT 1 cut(s) 12
Bme1390I CCNGG 2 cut(s) 85, 270
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmrFI CCNGG 2 cut(s) 85, 270
BmsI GCATC 1 cut(s) 81
BplI GAGNNNNNCTC 2 cut(s) 89, 121
Bpu10I CCTNAGC 1 cut(s) 50
BpuMI CCSGG 1 cut(s) 85
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 202, 269, 275
BseBI CCWGG 1 cut(s) 270
BseLI CCNNNNNNNGG 4 cut(s) 145, 202, 269, 275
BseMII CTCAG 1 cut(s) 41
BseX3I CGGCCG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 34, 138
BseYI CCCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 4 cut(s) 5, 74, 88, 279
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 6, 85
BslI CCNNNNNNNGG 4 cut(s) 145, 202, 269, 275
BsnI GGCC 4 cut(s) 5, 74, 88, 279
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 4 cut(s) 5, 74, 88, 279
BspCNI CTCAG 1 cut(s) 42
BspMAI CTGCAG 1 cut(s) 24
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 277
BstDEI CTNAG 1 cut(s) 50
BstENI CCTNNNNNAGG 1 cut(s) 273
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 2 cut(s) 83, 268
BstSFI CTRYAG 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 34, 138
BstZI CGGCCG 1 cut(s) 86
BsuRI GGCC 4 cut(s) 5, 74, 88, 279
BtsI GCAGTG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 277
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 4 cut(s) 11, 41, 166, 188
CspCI CAANNNNNGTGG 2 cut(s) 238, 273
CviAII CATG 2 cut(s) 95, 101
CviQI GTAC 4 cut(s) 11, 41, 166, 188
DdeI CTNAG 1 cut(s) 50
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
EaeI YGGCCR 3 cut(s) 3, 72, 86
EagI CGGCCG 1 cut(s) 86
EclXI CGGCCG 1 cut(s) 86
Eco47I GGWCC 1 cut(s) 260
Eco52I CGGCCG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 273
EcoRII CCWGG 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 96
FaeI CATG 2 cut(s) 98, 104
FaiI YATR 2 cut(s) 96, 102
FatI CATG 2 cut(s) 94, 100
Fnu4HI GCNGC 2 cut(s) 23, 152
Fsp4HI GCNGC 2 cut(s) 23, 152
GluI GCNGC 2 cut(s) 23, 152
GsaI CCCAGC 1 cut(s) 200
HaeIII GGCC 4 cut(s) 5, 74, 88, 279
HapII CCGG 2 cut(s) 6, 85
Hin1II CATG 2 cut(s) 98, 104
HinfI GANTC 3 cut(s) 112, 246, 265
HpaII CCGG 2 cut(s) 6, 85
HphI GGTGA 1 cut(s) 128
Hpy188I TCNGA 2 cut(s) 234, 264
Hpy188III TCNNGA 2 cut(s) 49, 250
HpyAV CCTTC 1 cut(s) 175
HpyCH4V TGCA 4 cut(s) 22, 94, 154, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 2 cut(s) 98, 104
Kzo9I GATC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 2 cut(s) 34, 138
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 121, 221
MlsI TGGCCA 1 cut(s) 74
MluNI TGGCCA 1 cut(s) 74
MlyI GAGTC 2 cut(s) 255, 274
Mox20I TGGCCA 1 cut(s) 74
Mph1103I ATGCAT 1 cut(s) 96
MscI TGGCCA 1 cut(s) 74
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 1 cut(s) 99
Msp20I TGGCCA 1 cut(s) 74
MspI CCGG 2 cut(s) 6, 85
MspR9I CCNGG 2 cut(s) 85, 270
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 1 cut(s) 80
NciI CCSGG 1 cut(s) 85
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 98, 104
NmuCI GTSAC 1 cut(s) 173
NsiI ATGCAT 1 cut(s) 96
PfeI GAWTC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 24, 153
PleI GAGTC 2 cut(s) 254, 273
PpsI GAGTC 2 cut(s) 254, 273
Psp6I CCWGG 1 cut(s) 268
PspFI CCCAGC 1 cut(s) 196
PspGI CCWGG 1 cut(s) 268
PspPI GGNCC 1 cut(s) 260
PstI CTGCAG 1 cut(s) 24
RsaI GTAC 4 cut(s) 12, 42, 167, 189
RsaNI GTAC 4 cut(s) 11, 41, 166, 188
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 2 cut(s) 23, 152
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 260
ScaI AGTACT 1 cut(s) 12
SchI GAGTC 2 cut(s) 255, 274
ScrFI CCNGG 2 cut(s) 85, 270
SetI ASST 2 cut(s) 56, 153
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 20
SinI GGWCC 1 cut(s) 260
SmiMI CAYNNNNRTG 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 83, 268
TaqI TCGA 1 cut(s) 107
TatI WGTACW 3 cut(s) 10, 40, 165
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 2 cut(s) 22, 151
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 2 cut(s) 46, 104
TspRI CASTG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 260
XagI CCTNNNNNAGG 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 167
ZrmI AGTACT 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.