Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

66057544 .. 66057918

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG474700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCTGGGTCAATGCTTGGGAAAAAGGGTGGTGATGGTGAAGTTACGTCTCCGTTGAAGAAAGGGAGGTTGGGTTTTGGATCTGGTGTTGATCGCCGGCTTAATGACTCATCTGGATTTTCTGTGGGAGGTGTGCCATCGGCTCTTGTTAGCCAGGATTCCTTGGGTCATCGGAAACGTAGGATCTCTGCTTCCACTTTCAGTTTTGGGATGGAGGGATCTCCTATCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTTCCTCTCCTACTATTAGTAAGGTTGGGGATGGGAAGAAACATAAACCAAAGATTCTCTCAGCTGCAAAGCGTCGTGCACTGCTCTCTACGCTTGAGGAGGAGGCCTCTGCTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

12.83

Weight (kDa)

10.33

Isoelectric Point (pI)

57.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	88, 191, 226
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	58
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	53, 85
AluBI	AGCT	1 cut(s)	320
AluI	AGCT	1 cut(s)	320
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	54
Alw44I	GTGCAC	1 cut(s)	333
AlwI	GGATC	3 cut(s)	88, 191, 226
AoxI	GGCC	1 cut(s)	360
ApaLI	GTGCAC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	320
AsuHPI	GGTGA	2 cut(s)	44, 50
BaeGI	GKGCMC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	249
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	4 cut(s)	29, 145, 205, 281
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	54
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BpiI	GAAGAC	1 cut(s)	249
BplI	GAGNNNNNCTC	1 cut(s)	347
BpuEI	CTTGAG	1 cut(s)	371
BsaJI	CCNNGG	1 cut(s)	162
BsaXI	ACNNNNNCTCC	2 cut(s)	58, 88
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse118I	RCCGGY	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	216, 292
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMII	CTCAG	1 cut(s)	330
BseRI	GAGGAG	2 cut(s)	368, 371
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	5
BshFI	GGCC	1 cut(s)	362
BsiHKAI	GWGCWC	1 cut(s)	337
BsiSI	CCGG	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	80, 91, 183, 218
BspANI	GGCC	1 cut(s)	362
BspCNI	CTCAG	1 cut(s)	329
BspPI	GGATC	3 cut(s)	88, 191, 226
BsrFI	RCCGGY	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	4 cut(s)	80, 91, 183, 218
BssT1I	CCWWGG	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	98, 236
BstDEI	CTNAG	1 cut(s)	316
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	216, 292
BstKTI	GATC	4 cut(s)	83, 94, 186, 221
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	80, 91, 183, 218
BstMWI	GCNNNNNNNGC	1 cut(s)	346
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	307
BstV2I	GAAGAC	1 cut(s)	249
BstX2I	RGATCY	3 cut(s)	80, 183, 218
BstYI	RGATCY	3 cut(s)	80, 183, 218
BsuRI	GGCC	1 cut(s)	362
BtsCI	GGATG	2 cut(s)	216, 292
BtsI	GCAGTG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	335
Cac8I	GCNNGC	2 cut(s)	98, 236
Cfr10I	RCCGGY	1 cut(s)	96
CseI	GACGC	1 cut(s)	317
CviJI	RGCY	7 cut(s)	5, 100, 143, 153, 234, 320, 362
CviKI_1	RGCY	7 cut(s)	5, 100, 143, 153, 234, 320, 362
DdeI	CTNAG	1 cut(s)	316
DpnI	GATC	4 cut(s)	82, 93, 185, 220
DpnII	GATC	4 cut(s)	80, 91, 183, 218
Eco130I	CCWWGG	1 cut(s)	162
Eco147I	AGGCCT	1 cut(s)	362
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	153
EcoT14I	CCWWGG	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	162
Esp3I	CGTCTC	1 cut(s)	54
FaiI	YATR	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	2 cut(s)	223, 299
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
GsaI	CCCAGC	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	362
HapII	CCGG	1 cut(s)	97
HgaI	GACGC	1 cut(s)	317
HinfI	GANTC	3 cut(s)	107, 158, 310
HpaII	CCGG	1 cut(s)	97
HphI	GGTGA	2 cut(s)	44, 50
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	335
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4IV	ACGT	2 cut(s)	47, 178
HpyCH4V	TGCA	3 cut(s)	238, 323, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	346
HpyF3I	CTNAG	1 cut(s)	316
HpySE526I	ACGT	2 cut(s)	47, 178
KroI	GCCGGC	1 cut(s)	96
KroNI	GCCGGC	1 cut(s)	98
Kzo9I	GATC	4 cut(s)	80, 91, 183, 218
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	5 cut(s)	69, 99, 110, 140, 167
Lsp1109I	GCAGC	1 cut(s)	307
MaeII	ACGT	2 cut(s)	47, 178
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	82, 93, 185, 220
MboI	GATC	4 cut(s)	80, 91, 183, 218
MboII	GAAGA	3 cut(s)	70, 249, 304
MflI	RGATCY	3 cut(s)	80, 183, 218
MhlI	GDGCHC	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	9 cut(s)	60, 122, 208, 238, 271, 346, 349, 352, 373
MroNI	GCCGGC	1 cut(s)	96
MseI	TTAA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	320
MspI	CCGG	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	346
NaeI	GCCGGC	1 cut(s)	98
NdeII	GATC	4 cut(s)	80, 91, 183, 218
NgoMIV	GCCGGC	1 cut(s)	96
PceI	AGGCCT	1 cut(s)	362
PdiI	GCCGGC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	158, 310
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	153
PsuI	RGATCY	3 cut(s)	80, 183, 218
PvuII	CAGCTG	1 cut(s)	320
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	1 cut(s)	321
Sau3AI	GATC	4 cut(s)	80, 91, 183, 218
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	7 cut(s)	50, 71, 133, 181, 249, 282, 322
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
SseBI	AGGCCT	1 cut(s)	362
StuI	AGGCCT	1 cut(s)	362
StyD4I	CCNGG	1 cut(s)	153
StyI	CCWWGG	1 cut(s)	162
TaiI	ACGT	2 cut(s)	50, 181
TfiI	GAWTC	2 cut(s)	158, 310
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	1 cut(s)	320
TspGWI	ACGGA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	342
VneI	GTGCAC	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.