Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001406

Physical Location & Seq

Genomic Coordinates Reverse (-)

60101915 .. 60102301

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG326800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGTTGGGTCGATGCTTGGGAAAAGGGGCGGTGGTGGTGAAGTCACTTCCCCATTGAAGAAAGGGAGATTAGGATCTGGATCTGGTACTGATCAAGGGCCTAATGACTCATCTGGAGCTTCTGTGGGAGGTGTGCAACCGGATCCTAATAGCCCGGATTCTTTGGGTCATCGGAATCGCAGGGTGTCTGCTTCCACTTTTAGTTTTGGGGTGGAGGGCTCCCCTACCAAAGGCTTGCAGTTTGAGGTGGGGAAGTCTGCATCCCCTACTACTGGTAAGGTAGGGGATGGGAAGAAACATAAACCAAAGATTCTTTCAGCTACAAAGCTCGTGCACTGCTCTCTAGGCTTGAGGAGGAGGCCTCTGCTCCTTGAAGATGGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.01

Weight (kDa)

10.23

Isoelectric Point (pI)

46.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001406)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g23711
prunus_persica	Prupe.1G407700_v2.0.a1 Prupe.3G281700_v2.0.a1
pyrus_communis	pycom08g05620 pycom17g03380
rosa_chinensis	RchiOBHm_Chr2g0170881 RchiOBHm_Chr6g0289031 RchiOBHm_Chr7g0222271
rosa_laevigata	RLG00000001172 RLG00000008907 RLG00000008913 RLG00000014117 RLG00000014203 RLG00000014204 RLG00000021990 RLG00000023949 RLG00000024929 RLG00000034655
rosa_multiflora	Rmu_sc0000220.1_g000012 Rmu_sc0003110.1_g000018 Rmu_sc0003395.1_g000004 Rmu_sc0011277.1_g000007 Rmu_sc0011582.1_g000018
rosa_roxburghii	Rroxscaffold_3G00237240
rosa_rugosa	Rorug02G0497700 Rorug02G0552100 Rorug05G0351900
rosa_samantha	Rh1BG311600 Rh1CG326800 Rh2AG624800 Rh2BG635500 Rh2CG472000 Rh2CG604200 Rh2DG647100 Rh3BG187400 Rh3BG187500 Rh3DG188300 Rh5AG461800 Rh5BG373200 Rh5BG373300 Rh5BG480000 Rh5CG377900 Rh5CG395000 Rh5CG504200 Rh6AG138900 Rh6BG513600 Rh7AG348400 Rh7AG474700 Rh7CG182200 Rh7CG366000
rosa_wichuraiana	Rw3G015310 Rw5G034010 Rw7G036470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	4 cut(s)	82, 88, 137, 150
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	2 cut(s)	230, 272
AgsI	TTSAA	2 cut(s)	58, 374
AjuI	GAANNNNNNNTTGG	2 cut(s)	298, 330
AluBI	AGCT	3 cut(s)	119, 320, 328
AluI	AGCT	3 cut(s)	119, 320, 328
Alw21I	GWGCWC	1 cut(s)	336
Alw44I	GTGCAC	1 cut(s)	332
AlwI	GGATC	4 cut(s)	82, 88, 137, 150
AoxI	GGCC	2 cut(s)	98, 359
ApaLI	GTGCAC	1 cut(s)	332
AspS9I	GGNCC	2 cut(s)	98, 380
AsuC2I	CCSGG	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	380
BaeGI	GKGCMC	1 cut(s)	336
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	336
BccI	CCATC	2 cut(s)	281, 371
BclI	TGATCA	1 cut(s)	91
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	1 cut(s)	344
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	98, 380
BmiI	GGNNCC	2 cut(s)	144, 220
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	3, 269
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
BpmI	CTGGAG	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	370
BpuMI	CCSGG	1 cut(s)	155
BsaBI	GATNNNNATC	2 cut(s)	73, 79
BsaWI	WCCGGW	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 272
Bse1I	ACTGG	1 cut(s)	277
Bse8I	GATNNNNATC	2 cut(s)	73, 79
BseGI	GGATG	2 cut(s)	260, 292
BseJI	GATNNNNATC	2 cut(s)	73, 79
BseLI	CCNNNNNNNGG	2 cut(s)	230, 272
BseNI	ACTGG	1 cut(s)	277
BseRI	GAGGAG	2 cut(s)	367, 370
BseSI	GKGCMC	1 cut(s)	336
BshFI	GGCC	2 cut(s)	100, 361
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	140, 155
BslI	CCNNNNNNNGG	2 cut(s)	230, 272
BsnI	GGCC	2 cut(s)	100, 361
Bsp1286I	GDGCHC	2 cut(s)	221, 336
Bsp143I	GATC	4 cut(s)	74, 80, 91, 142
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	100, 361
BspLI	GGNNCC	2 cut(s)	144, 220
BspPI	GGATC	4 cut(s)	82, 88, 137, 150
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	4 cut(s)	74, 80, 91, 142
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	236
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	2 cut(s)	260, 292
BstKTI	GATC	4 cut(s)	77, 83, 94, 145
BstMBI	GATC	4 cut(s)	74, 80, 91, 142
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	336
BstX2I	RGATCY	3 cut(s)	74, 80, 142
BstYI	RGATCY	3 cut(s)	74, 80, 142
BsuRI	GGCC	2 cut(s)	100, 361
BtsCI	GGATG	2 cut(s)	260, 292
BtsI	GCAGTG	1 cut(s)	334
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	98, 380
Csp6I	GTAC	1 cut(s)	87
CviJI	RGCY	9 cut(s)	100, 119, 153, 219, 234, 320, 328, 348, 361
CviKI_1	RGCY	9 cut(s)	100, 119, 153, 219, 234, 320, 328, 348, 361
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	4 cut(s)	76, 82, 93, 144
DpnII	GATC	4 cut(s)	74, 80, 91, 142
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	221
FaiI	YATR	1 cut(s)	300
FbaI	TGATCA	1 cut(s)	91
FokI	GGATG	2 cut(s)	247, 299
FriOI	GRGCYC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	100, 361
HapII	CCGG	2 cut(s)	140, 155
HinfI	GANTC	4 cut(s)	107, 158, 175, 310
HpaII	CCGG	2 cut(s)	140, 155
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	78, 114
Hpy8I	GTNNAC	1 cut(s)	334
HpyCH4V	TGCA	4 cut(s)	136, 238, 260, 334
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	4 cut(s)	74, 80, 91, 142
LmnI	GCTCC	3 cut(s)	116, 224, 372
LpnPI	CCDG	7 cut(s)	63, 69, 99, 153, 166, 168, 258
LweI	GCATC	2 cut(s)	3, 269
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	4 cut(s)	76, 82, 93, 144
MboI	GATC	4 cut(s)	74, 80, 91, 142
MboII	GAAGA	3 cut(s)	70, 304, 386
MflI	RGATCY	3 cut(s)	74, 80, 142
MhlI	GDGCHC	2 cut(s)	221, 336
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	7 cut(s)	122, 208, 238, 345, 348, 351, 372
MspI	CCGG	2 cut(s)	140, 155
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	345
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	4 cut(s)	74, 80, 91, 142
NlaIV	GGNNCC	2 cut(s)	144, 220
NmuCI	GTSAC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	361
PfeI	GAWTC	3 cut(s)	158, 175, 310
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	144, 220
PspPI	GGNCC	2 cut(s)	98, 380
PsuI	RGATCY	3 cut(s)	74, 80, 142
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
Sau3AI	GATC	4 cut(s)	74, 80, 91, 142
Sau96I	GGNCC	2 cut(s)	98, 380
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	221, 336
SetI	ASST	6 cut(s)	121, 133, 249, 282, 322, 330
SfaNI	GCATC	2 cut(s)	3, 269
SinI	GGWCC	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	153
TaqI	TCGA	1 cut(s)	11
TfiI	GAWTC	3 cut(s)	158, 175, 310
TscAI	CASTG	1 cut(s)	341
TseFI	GTSAC	1 cut(s)	43
Tsp45I	GTSAC	1 cut(s)	43
TspRI	CASTG	1 cut(s)	341
VneI	GTGCAC	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	228
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.