FvH4_1g23821

Alginate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000532
Physical Location & Seq
Forward (+)
15702268 .. 15703146
879 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23821.t1

Sequence Viewer

Length: 600 bp
ATGTCATACTCTTTTCATTCGATAGCTTTCTTCTGCTTGAGCTTCCTAATATTTCAGCTCACTGATCTTCAACACTTAGCTTTGGCATGGAGTGGGGGATCTGATGTTCCTCCTACAAAAGGCTTTGTGTCACTCCCTTTTAACCGATCCTACTACCATATTCAAAAGCCTTATGATGTGCCTGAAGACCAGCGCTATTGCTTCATCGATGGAGTTCATAAATGTTGGGTCTACTCCACAGACAAACCTCACACTACCACCAGCCAAACCCTGCCTCGCACTGAAATTGCTATACAAGGATACGGTTACTCGTCTGGTGTGTGGGAATTTGAAGCATATGCGTATGTACCAAATGGGACATCAGGTGTCTGCATAATGCAAGTGTTTGGAGCAACTCCTCCTCATGCCTCAACTCTGATGTTGAGGGTCTACAATGGTTCACTCACCTACTACAGGGCTCCGGTACTGGTTCCAAACATCTATGATTCAAGATCAATGTGGTTCACGATGTTGATGCTGTTGATGGATGTCTCAAAATCGAGGCAGATGGTCGTGGAGGAACGTCTCATGCTTTCAAGTGTGGAGTTTATTCCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

200

Amino Acids

22.78

Weight (kDa)

6.57

Isoelectric Point (pI)

46.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alginate_lyase2 PF08787 50 - 153 2.5e-14 Alginate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 231, 429
AclWI GGATC 2 cut(s) 106, 141
AcsI RAATTY 1 cut(s) 326
AcuI CTGAAG 1 cut(s) 204
AfaI GTAC 2 cut(s) 348, 465
AfeI AGCGCT 1 cut(s) 194
AfiI CCNNNNNNNGG 2 cut(s) 119, 453
AgsI TTSAA 5 cut(s) 71, 164, 332, 489, 576
AloI GAACNNNNNNTCC 2 cut(s) 90, 122
AluBI AGCT 4 cut(s) 26, 42, 58, 80
AluI AGCT 4 cut(s) 26, 42, 58, 80
Alw26I GTCTC 2 cut(s) 535, 569
AlwI GGATC 2 cut(s) 106, 141
Aor51HI AGCGCT 1 cut(s) 194
ApoI RAATTY 1 cut(s) 326
AspLEI GCGC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 436
BanII GRGCYC 1 cut(s) 460
BbsI GAAGAC 1 cut(s) 192
BccI CCATC 3 cut(s) 203, 517, 541
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciVI GTATCC 1 cut(s) 293
BcoDI GTCTC 2 cut(s) 535, 569
BfmI CTRYAG 1 cut(s) 451
BfoI RGCGCY 1 cut(s) 196
BfuI GTATCC 1 cut(s) 293
BmiI GGNNCC 2 cut(s) 459, 471
BmsI GCATC 1 cut(s) 504
BpiI GAAGAC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 207
BsaWI WCCGGW 1 cut(s) 460
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 453
Bse1I ACTGG 1 cut(s) 471
BseCI ATCGAT 1 cut(s) 207
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 119, 453
BseNI ACTGG 1 cut(s) 471
BseRI GAGGAG 2 cut(s) 387, 390
BshVI ATCGAT 1 cut(s) 207
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 119, 453
BsmAI GTCTC 2 cut(s) 535, 569
BsmBI CGTCTC 1 cut(s) 569
BsmFI GGGAC 1 cut(s) 370
Bsp1286I GDGCHC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 64, 98, 146, 491
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 2 cut(s) 459, 471
BspPI GGATC 2 cut(s) 106, 141
BsrI ACTGG 1 cut(s) 471
BssMI GATC 4 cut(s) 64, 98, 146, 491
Bst4CI ACNGT 1 cut(s) 305
BstDEI CTNAG 1 cut(s) 76
BstENI CCTNNNNNAGG 2 cut(s) 117, 451
BstF5I GGATG 1 cut(s) 532
BstH2I RGCGCY 1 cut(s) 196
BstHHI GCGC 1 cut(s) 195
BstKTI GATC 4 cut(s) 67, 101, 149, 494
BstMAI GTCTC 2 cut(s) 535, 569
BstMBI GATC 4 cut(s) 64, 98, 146, 491
BstSFI CTRYAG 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 98
BstYI RGATCY 1 cut(s) 98
Bsu15I ATCGAT 1 cut(s) 207
BsuI GTATCC 1 cut(s) 293
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 1 cut(s) 532
BtsIMutI CAGTG 2 cut(s) 60, 279
CfoI GCGC 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 207
Csp6I GTAC 2 cut(s) 347, 464
CviAII CATG 3 cut(s) 87, 404, 568
CviJI RGCY 8 cut(s) 26, 42, 58, 80, 123, 169, 264, 458
CviKI_1 RGCY 8 cut(s) 26, 42, 58, 80, 123, 169, 264, 458
CviQI GTAC 2 cut(s) 347, 464
DdeI CTNAG 1 cut(s) 76
DpnI GATC 4 cut(s) 66, 100, 148, 493
DpnII GATC 4 cut(s) 64, 98, 146, 491
Eco24I GRGCYC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 194
Eco57I CTGAAG 1 cut(s) 204
EcoNI CCTNNNNNAGG 2 cut(s) 117, 451
EcoT38I GRGCYC 1 cut(s) 460
Esp3I CGTCTC 1 cut(s) 569
FaeI CATG 3 cut(s) 90, 407, 571
FaqI GGGAC 1 cut(s) 370
FatI CATG 3 cut(s) 86, 403, 567
FauNDI CATATG 1 cut(s) 337
FblI GTMKAC 2 cut(s) 231, 429
FokI GGATG 1 cut(s) 539
FriOI GRGCYC 1 cut(s) 460
GlaI GCGC 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 196
HapII CCGG 1 cut(s) 461
HhaI GCGC 1 cut(s) 195
Hin1II CATG 3 cut(s) 90, 407, 571
Hin6I GCGC 1 cut(s) 193
HinP1I GCGC 1 cut(s) 193
HinfI GANTC 1 cut(s) 485
HpaII CCGG 1 cut(s) 461
HphI GGTGA 1 cut(s) 436
Hpy166II GTNNAC 4 cut(s) 232, 430, 440, 504
Hpy188I TCNGA 2 cut(s) 103, 417
Hpy188III TCNNGA 2 cut(s) 489, 505
Hpy8I GTNNAC 4 cut(s) 232, 430, 440, 504
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 2 cut(s) 372, 379
HpyF3I CTNAG 1 cut(s) 76
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 3 cut(s) 90, 407, 571
HspAI GCGC 1 cut(s) 193
Kzo9I GATC 4 cut(s) 64, 98, 146, 491
LmnI GCTCC 2 cut(s) 389, 463
LpnPI CCDG 9 cut(s) 195, 203, 274, 284, 300, 348, 439, 452, 474
LweI GCATC 1 cut(s) 504
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 2 cut(s) 129, 305
MalI GATC 4 cut(s) 66, 100, 148, 493
MboI GATC 4 cut(s) 64, 98, 146, 491
MboII GAAGA 3 cut(s) 22, 59, 197
MflI RGATCY 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 460
MluCI AATT 2 cut(s) 285, 326
MnlI CCTC 9 cut(s) 120, 258, 285, 408, 411, 417, 418, 534, 550
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 337
NdeII GATC 4 cut(s) 64, 98, 146, 491
NlaIII CATG 3 cut(s) 90, 407, 571
NlaIV GGNNCC 2 cut(s) 459, 471
NmuCI GTSAC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 485
PspN4I GGNNCC 2 cut(s) 459, 471
PsuI RGATCY 1 cut(s) 98
RsaI GTAC 2 cut(s) 348, 465
RsaNI GTAC 2 cut(s) 347, 464
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 4 cut(s) 64, 98, 146, 491
SduI GDGCHC 1 cut(s) 460
SetI ASST 8 cut(s) 28, 44, 60, 82, 250, 367, 449, 565
SfaNI GCATC 1 cut(s) 504
SfcI CTRYAG 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 2 cut(s) 285, 326
SspI AATATT 1 cut(s) 51
TaaI ACNGT 1 cut(s) 305
TaiI ACGT 1 cut(s) 565
TaqI TCGA 3 cut(s) 20, 207, 539
TasI AATT 2 cut(s) 285, 326
TfiI GAWTC 1 cut(s) 485
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 2 cut(s) 67, 286
TseFI GTSAC 1 cut(s) 129
Tsp45I GTSAC 1 cut(s) 129
TspDTI ATGAA 3 cut(s) 5, 193, 206
TspRI CASTG 2 cut(s) 67, 286
XagI CCTNNNNNAGG 2 cut(s) 117, 451
XapI RAATTY 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 231, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.