Rh2BG292200

Alginate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000532
Physical Location & Seq
Forward (+)
32872142 .. 32872378
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG292200.1

Sequence Viewer

Length: 237 bp
ATGGCTCCGGTGTTGGTTCCCAACATCTACGATAAGTGGTTCAAGCCCAATGTGGTTCACGATGTTGATGCTGCAAAAGTCAGAGTGTGCATTGATGGATGTCTCAAAATCGAAGCAGATGGTCGTGGAGGAACCTCTCATGCTTTCAAATGTGGTGTCTATGCCCAGATGAATGACTCCAATTACAAGGAGTCTCGTTGGAAACACATCAAAGTTTTAAGAAAGTGTGGACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

78

Amino Acids

8.84

Weight (kDa)

9.36

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alginate_lyase2 PF08787 11 - 72 2.3e-06 Alginate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 43, 148
Alw26I GTCTC 2 cut(s) 107, 198
ApeKI GCWGC 1 cut(s) 71
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
BbvI GCAGC 1 cut(s) 58
BccI CCATC 2 cut(s) 89, 113
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcoDI GTCTC 2 cut(s) 107, 198
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmiI GGNNCC 3 cut(s) 6, 18, 133
BmsI GCATC 1 cut(s) 58
BsaWI WCCGGW 1 cut(s) 7
BseGI GGATG 1 cut(s) 104
BseXI GCAGC 1 cut(s) 58
BsiSI CCGG 1 cut(s) 8
BsmAI GTCTC 2 cut(s) 107, 198
BspLI GGNNCC 3 cut(s) 6, 18, 133
BstF5I GGATG 1 cut(s) 104
BstMAI GTCTC 2 cut(s) 107, 198
BstV1I GCAGC 1 cut(s) 58
BtsCI GGATG 1 cut(s) 104
CviAII CATG 1 cut(s) 140
CviJI RGCY 2 cut(s) 5, 46
CviKI_1 RGCY 2 cut(s) 5, 46
FaeI CATG 1 cut(s) 143
FaiI YATR 2 cut(s) 141, 162
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
HapII CCGG 1 cut(s) 8
Hin1II CATG 1 cut(s) 143
HinfI GANTC 2 cut(s) 176, 191
HpaII CCGG 1 cut(s) 8
Hpy166II GTNNAC 2 cut(s) 58, 230
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 59
Hpy8I GTNNAC 2 cut(s) 58, 230
HpyCH4IV ACGT 1 cut(s) 232
HpyCH4V TGCA 2 cut(s) 74, 90
HpySE526I ACGT 1 cut(s) 232
Hsp92II CATG 1 cut(s) 143
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 21, 179
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 58
MaeII ACGT 1 cut(s) 232
MluCI AATT 1 cut(s) 181
MlyI GAGTC 2 cut(s) 170, 200
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 2 cut(s) 122, 145
MseI TTAA 1 cut(s) 218
MspI CCGG 1 cut(s) 8
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 3 cut(s) 6, 18, 133
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 170, 199
PpsI GAGTC 2 cut(s) 170, 199
PspN4I GGNNCC 3 cut(s) 6, 18, 133
SaqAI TTAA 1 cut(s) 218
SatI GCNGC 1 cut(s) 72
SchI GAGTC 2 cut(s) 170, 200
SetI ASST 2 cut(s) 137, 235
SfaNI GCATC 1 cut(s) 58
SgeI CNNG 8 cut(s) 20, 55, 71, 137, 152, 178, 199, 207
Sse9I AATT 1 cut(s) 181
TaiI ACGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 111
TasI AATT 1 cut(s) 181
Tru1I TTAA 1 cut(s) 218
Tru9I TTAA 1 cut(s) 218
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.