Rorug06G0089100

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000532
Physical Location & Seq
Reverse (-)
11868588 .. 11868854
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0089100.1

Sequence Viewer

Length: 267 bp
ATGTGGTCGGTAGTCCGGTTCGGCGCTCGACAACCCCCGGCCAAGCATATAAGCACTTCGTCAAGAGCTGCCACGTCATCGTCAGGGCAGGCGATGTCGGCAAGCTTCGCGAGGTCCAGGTCATCTCGAGGCTTCCGGGCAACAGCAACAAGGAAATGCTGGACGTGCTGGACGAGGAAAGCCACCTCATCAGCTTCAGCATGGTGGGCAGCGACCACAAGTTGTCTTTTTTTTTTTTGGGCAGACTACATGCCACAGGTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

88

Amino Acids

9.77

Weight (kDa)

11.72

Isoelectric Point (pI)

68.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AcoI YGGCCR 1 cut(s) 39
AcuI CTGAAG 1 cut(s) 180
AjiI CACGTC 2 cut(s) 75, 165
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 68, 105, 194
AluI AGCT 3 cut(s) 68, 105, 194
Ama87I CYCGRG 1 cut(s) 126
AoxI GGCC 1 cut(s) 39
ApeKI GCWGC 2 cut(s) 68, 209
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 114
AsuC2I CCSGG 2 cut(s) 38, 137
AvaI CYCGRG 1 cut(s) 126
AvaII GGWCC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 55, 221
BciT130I CCWGG 1 cut(s) 118
BcnI CCSGG 2 cut(s) 38, 137
BfaI CTAG 1 cut(s) 265
BfoI RGCGCY 1 cut(s) 27
BisI GCNGC 2 cut(s) 69, 210
BlsI GCNGC 2 cut(s) 70, 211
Bme1390I CCNGG 3 cut(s) 38, 118, 137
Bme18I GGWCC 1 cut(s) 114
BmeT110I CYCGRG 1 cut(s) 126
BmgBI CACGTC 2 cut(s) 75, 165
BmgT120I GGNCC 1 cut(s) 114
BmrFI CCNGG 3 cut(s) 38, 118, 137
BpuMI CCSGG 2 cut(s) 38, 137
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 15
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 36
BseXI GCAGC 2 cut(s) 55, 221
Bsh1236I CGCG 1 cut(s) 110
BshFI GGCC 1 cut(s) 41
BsiHKCI CYCGRG 1 cut(s) 126
BsiSI CCGG 3 cut(s) 16, 38, 136
BsnI GGCC 1 cut(s) 41
BsoBI CYCGRG 1 cut(s) 126
Bsp68I TCGCGA 1 cut(s) 110
BspANI GGCC 1 cut(s) 41
BspFNI CGCG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 118
BstC8I GCNNGC 2 cut(s) 90, 103
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 98, 107, 165, 206
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 3 cut(s) 36, 116, 135
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 55, 221
BsuRI GGCC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 107
BtrI CACGTC 2 cut(s) 75, 165
BtuMI TCGCGA 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 90, 103
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 114
CviAII CATG 2 cut(s) 201, 250
CviJI RGCY 6 cut(s) 41, 68, 105, 132, 182, 194
CviKI_1 RGCY 6 cut(s) 41, 68, 105, 132, 182, 194
EaeI YGGCCR 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 180
Eco88I CYCGRG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 116
FaeI CATG 2 cut(s) 204, 253
FaiI YATR 4 cut(s) 48, 50, 202, 251
FatI CATG 2 cut(s) 200, 249
Fnu4HI GCNGC 2 cut(s) 69, 210
Fsp4HI GCNGC 2 cut(s) 69, 210
FspBI CTAG 1 cut(s) 265
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 69, 210
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 1 cut(s) 41
HapII CCGG 3 cut(s) 16, 38, 136
HhaI GCGC 1 cut(s) 26
Hin1II CATG 2 cut(s) 204, 253
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HindIII AAGCTT 1 cut(s) 103
HpaII CCGG 3 cut(s) 16, 38, 136
Hpy188III TCNNGA 3 cut(s) 63, 109, 126
HpyCH4IV ACGT 2 cut(s) 74, 164
HpyF10VI GCNNNNNNNGC 4 cut(s) 98, 107, 165, 206
HpySE526I ACGT 2 cut(s) 74, 164
Hsp92II CATG 2 cut(s) 204, 253
HspAI GCGC 1 cut(s) 24
Lsp1109I GCAGC 2 cut(s) 55, 221
MaeI CTAG 1 cut(s) 265
MaeII ACGT 2 cut(s) 74, 164
MnlI CCTC 4 cut(s) 105, 122, 168, 196
MspI CCGG 3 cut(s) 16, 38, 136
MspR9I CCNGG 3 cut(s) 38, 118, 137
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 4 cut(s) 98, 107, 165, 206
NciI CCSGG 2 cut(s) 38, 137
NlaIII CATG 2 cut(s) 204, 253
NruI TCGCGA 1 cut(s) 110
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PkrI GCNGC 2 cut(s) 70, 211
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 114
RruI TCGCGA 1 cut(s) 110
SatI GCNGC 2 cut(s) 69, 210
Sau96I GGNCC 1 cut(s) 114
ScrFI CCNGG 3 cut(s) 38, 118, 137
SetI ASST 9 cut(s) 70, 77, 107, 116, 122, 167, 188, 196, 261
Sfr274I CTCGAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 114
SlaI CTCGAG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 126
SmoI CTYRAG 1 cut(s) 126
SspMI CTAG 1 cut(s) 265
StyD4I CCNGG 3 cut(s) 36, 116, 135
TaiI ACGT 2 cut(s) 77, 167
TaqI TCGA 2 cut(s) 28, 127
TseI GCWGC 2 cut(s) 68, 209
VpaK11BI GGWCC 1 cut(s) 114
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 126
XspI CTAG 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.