RchiOBHm_Chr2g0119771

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000532
Physical Location & Seq
Forward (+)
32341373 .. 32342296
924 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49246

Sequence Viewer

Length: 609 bp
ATGAGTGTCCTTAATCACATTGCTTTAGTAAGCACAGCTTTTATTCTTCTGCTAACGCAATGGTCAAGCAGCTGGCCTGTAGATCCAACCCTTGGCTTCATAAGTCTCCCATTAAACACATCAAACTATCATATCCACAAGCCATATGACTTGCCGCTAAGTAAACGATACAGTTTCAAACATGGAGTGCACAAGATGTGGGTGTACTTCAAGGATAAGCCCCTCTCTCGAATAGGATACGATTATTCTTCAGGTGTATGGCAATTCGAAGGATACGGGTACGTACCATGTGGAACAGCCAATGTGACCATAATGCAAGTGTTTGGGGCAAGCCCTCACGCAACCACTCTAATGCTTAGAGTTGGTTCAAATGGTACCCTTACATACTATAGGACTGTAGTCCTGGATCCTTACATCTATGACAGATGGTTCCGAGTTAATGTAATCCACGATGTCTACGCCTCGCATTTGAAGGTTTATATCGATGGAGTTCTCAAATTAGAAGCTCCCGGTCGCGGAGGAAAGTTTCATTATTTTAAATGCGGCGTCTACTCTCAGCCGGATGGTCTTACTACATGGAGTCTCGTTGGAAAGGGATCAAGGTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

9.35

Isoelectric Point (pI)

30.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alginate_lyase2 PF08787 80 - 188 2.4e-14 Alginate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 374
AccB1I GGYRCC 1 cut(s) 374
AccB7I CCANNNNNTGG 1 cut(s) 92
AccI GTMKAC 2 cut(s) 456, 549
AccII CGCG 1 cut(s) 516
AciI CCGC 3 cut(s) 155, 516, 543
AclWI GGATC 4 cut(s) 77, 401, 414, 604
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 4 cut(s) 206, 281, 285, 376
AfiI CCNNNNNNNGG 2 cut(s) 92, 515
AgsI TTSAA 4 cut(s) 178, 211, 369, 472
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 3 cut(s) 38, 72, 506
AluI AGCT 3 cut(s) 38, 72, 506
Alw21I GWGCWC 1 cut(s) 192
Alw26I GTCTC 2 cut(s) 110, 587
Alw44I GTGCAC 1 cut(s) 188
AlwI GGATC 4 cut(s) 77, 401, 414, 604
AoxI GGCC 1 cut(s) 74
ApaLI GTGCAC 1 cut(s) 188
ApeKI GCWGC 1 cut(s) 69
Asp718I GGTACC 1 cut(s) 374
AsuC2I CCSGG 1 cut(s) 510
AsuII TTCGAA 1 cut(s) 267
BaeGI GKGCMC 1 cut(s) 192
BamHI GGATCC 1 cut(s) 406
BanI GGYRCC 1 cut(s) 374
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 81
BccI CCATC 3 cut(s) 420, 479, 557
BciT130I CCWGG 1 cut(s) 404
BciVI GTATCC 2 cut(s) 230, 266
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 110, 587
BfmI CTRYAG 3 cut(s) 78, 388, 396
BfuI GTATCC 2 cut(s) 230, 266
BisI GCNGC 3 cut(s) 70, 155, 544
BlsI GCNGC 3 cut(s) 71, 156, 545
Bme1390I CCNGG 2 cut(s) 404, 510
BmiI GGNNCC 3 cut(s) 376, 408, 431
BmrFI CCNGG 2 cut(s) 404, 510
BoxI GACNNNNGTC 1 cut(s) 398
Bpu14I TTCGAA 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 510
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 283
BsaHI GRCGYC 1 cut(s) 546
BsaJI CCNNGG 1 cut(s) 91
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 515
Bse3DI GCAATG 2 cut(s) 18, 65
BseBI CCWGG 1 cut(s) 404
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 92, 515
BseMI GCAATG 2 cut(s) 18, 65
BseMII CTCAG 1 cut(s) 569
BseSI GKGCMC 1 cut(s) 192
BseXI GCAGC 1 cut(s) 81
Bsh1236I CGCG 1 cut(s) 516
Bsh1285I CGRYCG 1 cut(s) 514
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 374
BshVI ATCGAT 1 cut(s) 483
BsiEI CGRYCG 1 cut(s) 514
BsiHKAI GWGCWC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 510, 560
BslI CCNNNNNNNGG 2 cut(s) 92, 515
BsmAI GTCTC 2 cut(s) 110, 587
BsnI GGCC 1 cut(s) 76
Bsp119I TTCGAA 1 cut(s) 267
Bsp1286I GDGCHC 1 cut(s) 192
Bsp143I GATC 3 cut(s) 82, 406, 596
BspACI CCGC 3 cut(s) 155, 516, 543
BspANI GGCC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 568
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 1 cut(s) 516
BspLI GGNNCC 3 cut(s) 376, 408, 431
BspPI GGATC 4 cut(s) 77, 401, 414, 604
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 374
BsrDI GCAATG 2 cut(s) 18, 65
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 3 cut(s) 82, 406, 596
BssNI GRCGYC 1 cut(s) 546
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 2 cut(s) 173, 397
BstACI GRCGYC 1 cut(s) 546
BstBAI YACGTR 1 cut(s) 283
BstBI TTCGAA 1 cut(s) 267
BstC8I GCNNGC 2 cut(s) 74, 331
BstDEI CTNAG 3 cut(s) 158, 356, 555
BstF5I GGATG 1 cut(s) 568
BstFNI CGCG 1 cut(s) 516
BstKTI GATC 3 cut(s) 85, 409, 599
BstMAI GTCTC 2 cut(s) 110, 587
BstMBI GATC 3 cut(s) 82, 406, 596
BstMCI CGRYCG 1 cut(s) 514
BstNI CCWGG 1 cut(s) 404
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 2 cut(s) 402, 508
BstSFI CTRYAG 3 cut(s) 78, 388, 396
BstSLI GKGCMC 1 cut(s) 192
BstSNI TACGTA 1 cut(s) 283
BstUI CGCG 1 cut(s) 516
BstV1I GCAGC 1 cut(s) 81
BstX2I RGATCY 2 cut(s) 82, 406
BstYI RGATCY 2 cut(s) 82, 406
Bsu15I ATCGAT 1 cut(s) 483
BsuI GTATCC 2 cut(s) 230, 266
BsuRI GGCC 1 cut(s) 76
BsuTUI ATCGAT 1 cut(s) 483
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 2 cut(s) 74, 331
ClaI ATCGAT 1 cut(s) 483
CseI GACGC 1 cut(s) 535
Csp6I GTAC 4 cut(s) 205, 280, 284, 375
CviAII CATG 3 cut(s) 182, 288, 576
CviQI GTAC 4 cut(s) 205, 280, 284, 375
DdeI CTNAG 3 cut(s) 158, 356, 555
DpnI GATC 3 cut(s) 84, 408, 598
DpnII GATC 3 cut(s) 82, 406, 596
DraI TTTAAA 1 cut(s) 538
Eco105I TACGTA 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 234
EcoRII CCWGG 1 cut(s) 402
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 3 cut(s) 185, 291, 579
FalI AAGNNNNNCTT 2 cut(s) 22, 54
FatI CATG 3 cut(s) 181, 287, 575
FauNDI CATATG 1 cut(s) 145
FblI GTMKAC 2 cut(s) 456, 549
Fnu4HI GCNGC 3 cut(s) 70, 155, 544
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 70, 155, 544
GluI GCNGC 3 cut(s) 70, 155, 544
HaeIII GGCC 1 cut(s) 76
HapII CCGG 2 cut(s) 510, 560
HgaI GACGC 1 cut(s) 535
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 3 cut(s) 185, 291, 579
HinfI GANTC 1 cut(s) 580
HpaII CCGG 2 cut(s) 510, 560
Hpy166II GTNNAC 5 cut(s) 164, 190, 205, 457, 550
Hpy188I TCNGA 1 cut(s) 434
Hpy188III TCNNGA 1 cut(s) 228
Hpy8I GTNNAC 5 cut(s) 164, 190, 205, 457, 550
HpyAV CCTTC 2 cut(s) 263, 466
HpyCH4III ACNGT 2 cut(s) 173, 397
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 190, 316
HpyF3I CTNAG 3 cut(s) 158, 356, 555
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 3 cut(s) 185, 291, 579
KpnI GGTACC 1 cut(s) 378
Kzo9I GATC 3 cut(s) 82, 406, 596
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 7 cut(s) 58, 90, 237, 389, 416, 523, 573
Lsp1109I GCAGC 1 cut(s) 81
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 84, 408, 598
MboI GATC 3 cut(s) 82, 406, 596
MboII GAAGA 2 cut(s) 38, 240
MflI RGATCY 2 cut(s) 82, 406
MhlI GDGCHC 1 cut(s) 192
MluCI AATT 2 cut(s) 263, 497
MlyI GAGTC 1 cut(s) 589
MmeI TCCRAC 2 cut(s) 110, 568
MnlI CCTC 4 cut(s) 233, 345, 472, 512
MseI TTAA 4 cut(s) 12, 113, 438, 537
MslI CAYNNNNRTG 1 cut(s) 350
MspA1I CMGCKG 1 cut(s) 72
MspI CCGG 2 cut(s) 510, 560
MspR9I CCNGG 2 cut(s) 404, 510
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 516
NciI CCSGG 1 cut(s) 510
NdeI CATATG 1 cut(s) 145
NdeII GATC 3 cut(s) 82, 406, 596
NlaIII CATG 3 cut(s) 185, 291, 579
NlaIV GGNNCC 3 cut(s) 376, 408, 431
NmuCI GTSAC 1 cut(s) 304
NspV TTCGAA 1 cut(s) 267
PflMI CCANNNNNTGG 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 402
PkrI GCNGC 3 cut(s) 71, 156, 545
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
Ppu21I YACGTR 1 cut(s) 283
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PspN4I GGNNCC 3 cut(s) 376, 408, 431
PsuI RGATCY 2 cut(s) 82, 406
PvuII CAGCTG 1 cut(s) 72
RsaI GTAC 4 cut(s) 206, 281, 285, 376
RsaNI GTAC 4 cut(s) 205, 280, 284, 375
RseI CAYNNNNRTG 1 cut(s) 350
SaqAI TTAA 4 cut(s) 12, 113, 438, 537
SatI GCNGC 3 cut(s) 70, 155, 544
Sau3AI GATC 3 cut(s) 82, 406, 596
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 2 cut(s) 404, 510
SduI GDGCHC 1 cut(s) 192
SetI ASST 7 cut(s) 40, 74, 256, 285, 477, 508, 605
SfcI CTRYAG 3 cut(s) 78, 388, 396
SfuI TTCGAA 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 350
SnaBI TACGTA 1 cut(s) 283
Sse9I AATT 2 cut(s) 263, 497
SsiI CCGC 3 cut(s) 155, 516, 543
StyD4I CCNGG 2 cut(s) 402, 508
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 2 cut(s) 173, 397
TaiI ACGT 1 cut(s) 285
TaqI TCGA 3 cut(s) 229, 267, 483
TasI AATT 2 cut(s) 263, 497
TatI WGTACW 1 cut(s) 204
TauI GCSGC 2 cut(s) 157, 546
Tru1I TTAA 4 cut(s) 12, 113, 438, 537
Tru9I TTAA 4 cut(s) 12, 113, 438, 537
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 69
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 2 cut(s) 88, 518
Van91I CCANNNNNTGG 1 cut(s) 92
VneI GTGCAC 1 cut(s) 188
XmiI GTMKAC 2 cut(s) 456, 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.