Rorug06G0088700

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000532
Physical Location & Seq
Forward (+)
11831268 .. 11832840
1573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0088700.1

Sequence Viewer

Length: 468 bp
ATGGCTTGTTCGTTTAGTTTGCCATCAACAGGCCTCCATAAATTTGGATTGAGTCCTCAAAGCAGAGTTTCGCACACGAAATATGGAGTTTTCACTTTGAGATCCTCACCTGGGCTTCTTCGTGTCCGGGCCGTGCAAGAGAATGGAGGGTCCCGCAGACTAGTTGATATAATCAGAACTGTGCCAGAGCTCTCGAGGAACTACTTTCGAAGTCCATCTCGTAGGGCTCTCTTTGGGGGAATATCTTTGTTGGGTGGGTTTTACGTTGCACAAACAATATCTCTGTCATTTGGAGCTTTAGGAGTCAATGATGTTATTGCTGCAGTTGTGTGTGTTCTCCTGACAGAATATGTAACCAAATTTTATTACAGCAGACCAAAAGTAACATTCCCTGTTGCTCTTCTCAACAATTTCAAAATGGGATTCACTTATGGTCTGTTCATAGATGCTTTTAAGCTTGCCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

155

Amino Acids

17.04

Weight (kDa)

10.33

Isoelectric Point (pI)

63.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF565 PF04483 101 - 155 1.5e-19 Protein of unknown function (DUF565)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 41, 359
AfiI CCNNNNNNNGG 2 cut(s) 29, 111
AgsI TTSAA 1 cut(s) 415
AhlI ACTAGT 1 cut(s) 160
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 190, 296, 457
AluI AGCT 3 cut(s) 190, 296, 457
Alw21I GWGCWC 1 cut(s) 192
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 31, 129
ApeKI GCWGC 1 cut(s) 320
ApoI RAATTY 2 cut(s) 41, 359
AspS9I GGNCC 2 cut(s) 129, 150
AsuC2I CCSGG 1 cut(s) 128
AsuHPI GGTGA 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 208
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 150
BanII GRGCYC 2 cut(s) 192, 229
Bbv12I GWGCWC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 31, 223
BceAI ACGGC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 111
BcnI CCSGG 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 160
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 321
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 111, 128
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 129, 150
BmiI GGNNCC 2 cut(s) 151, 152
BmrFI CCNGG 2 cut(s) 111, 128
BmsI GCATC 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 111
Bse1I ACTGG 1 cut(s) 462
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 29, 111
BseNI ACTGG 1 cut(s) 462
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 2 cut(s) 33, 131
BsiHKAI GWGCWC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 127
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 29, 111
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 2 cut(s) 33, 131
BsoBI CYCGRG 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 208
Bsp1286I GDGCHC 2 cut(s) 192, 229
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 33, 131
BspLI GGNNCC 2 cut(s) 151, 152
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 405
BspT104I TTCGAA 1 cut(s) 208
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 110
BssMI GATC 1 cut(s) 101
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 405
BstBI TTCGAA 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 459
BstKTI GATC 1 cut(s) 104
BstMBI GATC 1 cut(s) 101
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 109, 126
BstSFI CTRYAG 1 cut(s) 321
BstV1I GCAGC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 101
BstXI CCANNNNNNTGG 1 cut(s) 44
BstYI RGATCY 1 cut(s) 101
BsuRI GGCC 2 cut(s) 33, 131
Cac8I GCNNGC 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 129, 150
CviJI RGCY 8 cut(s) 5, 33, 115, 131, 190, 227, 296, 457
CviKI_1 RGCY 8 cut(s) 5, 33, 115, 131, 190, 227, 296, 457
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Ecl136II GAGCTC 1 cut(s) 190
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 192, 229
Eco47I GGWCC 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 190
Eco88I CYCGRG 1 cut(s) 193
EcoICRI GAGCTC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 109
EcoT38I GRGCYC 2 cut(s) 192, 229
FaiI YATR 6 cut(s) 39, 84, 170, 351, 432, 443
FaqI GGGAC 1 cut(s) 136
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 321
FriOI GRGCYC 2 cut(s) 192, 229
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 161
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 2 cut(s) 33, 131
HapII CCGG 1 cut(s) 127
HindIII AAGCTT 1 cut(s) 455
HinfI GANTC 3 cut(s) 52, 303, 423
HpaII CCGG 1 cut(s) 127
HphI GGTGA 1 cut(s) 99
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 2 cut(s) 193, 340
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 136, 269, 323
HpySE526I ACGT 1 cut(s) 264
KflI GGGWCCC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 101
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 293
LpnPI CCDG 7 cut(s) 15, 96, 123, 140, 198, 353, 405
Lsp1109I GCAGC 1 cut(s) 307
LweI GCATC 1 cut(s) 436
MaeI CTAG 1 cut(s) 161
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 352, 382
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MboII GAAGA 2 cut(s) 110, 392
MflI RGATCY 1 cut(s) 101
MhlI GDGCHC 2 cut(s) 192, 229
MluCI AATT 3 cut(s) 41, 359, 409
MlyI GAGTC 2 cut(s) 61, 312
MnlI CCTC 5 cut(s) 44, 66, 115, 140, 189
MseI TTAA 1 cut(s) 453
MspI CCGG 1 cut(s) 127
MspR9I CCNGG 2 cut(s) 111, 128
MvaI CCWGG 1 cut(s) 111
NciI CCSGG 1 cut(s) 128
NdeII GATC 1 cut(s) 101
NlaIV GGNNCC 2 cut(s) 151, 152
NspV TTCGAA 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 193
PceI AGGCCT 1 cut(s) 33
PciSI GCTCTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 423
PkrI GCNGC 1 cut(s) 322
PleI GAGTC 2 cut(s) 60, 311
PpsI GAGTC 2 cut(s) 60, 311
PpuMI RGGWCCY 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 192
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 2 cut(s) 151, 152
PspPI GGNCC 2 cut(s) 129, 150
PspPPI RGGWCCY 1 cut(s) 150
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 1 cut(s) 101
SacI GAGCTC 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 453
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 101
Sau96I GGNCC 2 cut(s) 129, 150
SchI GAGTC 2 cut(s) 61, 312
ScrFI CCNGG 2 cut(s) 111, 128
SduI GDGCHC 2 cut(s) 192, 229
SetI ASST 5 cut(s) 112, 192, 267, 298, 459
SfaNI GCATC 1 cut(s) 436
SfcI CTRYAG 1 cut(s) 321
Sfr274I CTCGAG 1 cut(s) 193
SfuI TTCGAA 1 cut(s) 208
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
SpeI ACTAGT 1 cut(s) 160
Sse9I AATT 3 cut(s) 41, 359, 409
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 161
SstI GAGCTC 1 cut(s) 192
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 2 cut(s) 109, 126
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 194, 208
TasI AATT 3 cut(s) 41, 359, 409
TfiI GAWTC 1 cut(s) 423
Tru1I TTAA 1 cut(s) 453
Tru9I TTAA 1 cut(s) 453
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 430
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 2 cut(s) 41, 359
XhoI CTCGAG 1 cut(s) 193
XspI CTAG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.