Rorug06G0088800

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000532
Physical Location & Seq
Reverse (-)
11836996 .. 11837774
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0088800.1

Sequence Viewer

Length: 642 bp
ATGGCTGGAGGCATGAATGGGGATCAGGCGGTGATTGTCAATTCGGATTCGACGCTGGTTTCCTTGGGGGATGCGGGAGCTGCTGCGTTCCAGGACGGCTTCTGGTATATGGCTGGCAGGCTGCTGGCACCGAAAGCCAAGTTCCCGGGATTCAAAGGGACCATCGCCACTATTTGGCGTGTCAGATCGGGTCTCACTATACAAGATGCCGGAGAGCGTTTTGTTTTTCAATTCGACAGTGAAGCGGTGCGTAATCGCATCTTGCATGGGGGCCCTTGGTTCTACCGCAATACCATGCTGGTAGTAGGAGAGTATGATGGGATTTGTCCAGTGGAGGATGTGTCACTGAATACAATGGAGGCTTGGGTTGCTGTGAGGGGTCTCCTTTTTGGCCTGAGAAACAAGAATGCGCTCGCGTTGGTGGGGGCATCTCTAGGGACAATGGTTCGTATGGATCTGAATGCAGTGAGAAGGAAGGAAGAGGAACAGAGGATAAAAATTTTGTTCGACGTTCGTTGTCGGATCCGCACCTGGAAGGTTTTCCGAAGTAAGGAAAGAAATAAGAGCAAAAGGAAGGAGATATGTGCAATTGATGGAGAATTGTGGACTCTTGATGAATCAAGGAAGTTTAAGGCAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

213

Amino Acids

23.96

Weight (kDa)

9.71

Isoelectric Point (pI)

37.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 52 - 103 1.6e-07 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 174
AccII CGCG 1 cut(s) 416
AciI CCGC 5 cut(s) 29, 74, 245, 286, 526
AclWI GGATC 4 cut(s) 30, 462, 517, 530
AcsI RAATTY 1 cut(s) 498
AfiI CCNNNNNNNGG 2 cut(s) 174, 550
AgsI TTSAA 2 cut(s) 154, 230
AjnI CCWGG 2 cut(s) 90, 530
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
Alw26I GTCTC 2 cut(s) 197, 386
AlwI GGATC 4 cut(s) 30, 462, 517, 530
Ama87I CYCGRG 1 cut(s) 145
AoxI GGCC 2 cut(s) 271, 391
ApaI GGGCCC 1 cut(s) 275
ApeKI GCWGC 3 cut(s) 80, 83, 121
ApoI RAATTY 1 cut(s) 498
Asp700I GAANNNNTTC 1 cut(s) 539
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 159, 271, 272
AsuC2I CCSGG 2 cut(s) 146, 147
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 145
AvaII GGWCC 1 cut(s) 159
BaeGI GKGCMC 1 cut(s) 275
BamHI GGATCC 1 cut(s) 522
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 67, 70, 108
BccI CCATC 3 cut(s) 170, 311, 587
BceAI ACGGC 1 cut(s) 112
BciT130I CCWGG 2 cut(s) 92, 532
BcnI CCSGG 2 cut(s) 146, 147
BcoDI GTCTC 2 cut(s) 197, 386
BfaI CTAG 1 cut(s) 434
BisI GCNGC 3 cut(s) 81, 84, 122
BlsI GCNGC 3 cut(s) 82, 85, 123
Bme1390I CCNGG 4 cut(s) 92, 146, 147, 532
Bme18I GGWCC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 145
BmgT120I GGNCC 3 cut(s) 159, 271, 272
BmiI GGNNCC 5 cut(s) 129, 160, 272, 273, 524
BmrFI CCNGG 4 cut(s) 92, 146, 147, 532
BmsI GCATC 4 cut(s) 61, 196, 267, 437
BpmI CTGGAG 1 cut(s) 27
BpuMI CCSGG 2 cut(s) 146, 147
BsaI GGTCTC 2 cut(s) 197, 386
BsaJI CCNNGG 3 cut(s) 63, 145, 275
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 550
Bse1I ACTGG 1 cut(s) 329
BseBI CCWGG 2 cut(s) 92, 532
BseDI CCNNGG 3 cut(s) 63, 145, 275
BseGI GGATG 2 cut(s) 76, 343
BseLI CCNNNNNNNGG 2 cut(s) 174, 550
BseMII CTCAG 1 cut(s) 386
BseNI ACTGG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 275
BseXI GCAGC 3 cut(s) 67, 70, 108
Bsh1236I CGCG 1 cut(s) 416
BshFI GGCC 2 cut(s) 273, 393
BshNI GGYRCC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 145
BsiSI CCGG 2 cut(s) 146, 210
BslFI GGGAC 2 cut(s) 172, 451
BslI CCNNNNNNNGG 2 cut(s) 174, 550
BsmAI GTCTC 2 cut(s) 197, 386
BsmFI GGGAC 2 cut(s) 172, 451
BsmI GAATGC 2 cut(s) 412, 466
BsnI GGCC 2 cut(s) 273, 393
Bso31I GGTCTC 2 cut(s) 197, 386
BsoBI CYCGRG 1 cut(s) 145
Bsp120I GGGCCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 4 cut(s) 22, 185, 454, 522
BspACI CCGC 5 cut(s) 29, 74, 245, 286, 526
BspANI GGCC 2 cut(s) 273, 393
BspCNI CTCAG 1 cut(s) 387
BspFNI CGCG 1 cut(s) 416
BspLI GGNNCC 5 cut(s) 129, 160, 272, 273, 524
BspPI GGATC 4 cut(s) 30, 462, 517, 530
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 2 cut(s) 197, 386
BsrI ACTGG 1 cut(s) 329
BssECI CCNNGG 3 cut(s) 63, 145, 275
BssMI GATC 4 cut(s) 22, 185, 454, 522
BssT1I CCWWGG 2 cut(s) 63, 275
Bst2UI CCWGG 2 cut(s) 92, 532
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 1 cut(s) 474
BstC8I GCNNGC 4 cut(s) 115, 119, 126, 414
BstDEI CTNAG 1 cut(s) 395
BstF5I GGATG 2 cut(s) 76, 343
BstFNI CGCG 1 cut(s) 416
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 4 cut(s) 25, 188, 457, 525
BstMAI GTCTC 2 cut(s) 197, 386
BstMBI GATC 4 cut(s) 22, 185, 454, 522
BstMWI GCNNNNNNNGC 3 cut(s) 80, 134, 368
BstNI CCWGG 2 cut(s) 92, 532
BstSCI CCNGG 4 cut(s) 90, 144, 145, 530
BstSLI GKGCMC 1 cut(s) 275
BstUI CGCG 1 cut(s) 416
BstV1I GCAGC 3 cut(s) 67, 70, 108
BstX2I RGATCY 2 cut(s) 454, 522
BstYI RGATCY 2 cut(s) 454, 522
BsuRI GGCC 2 cut(s) 273, 393
BtgZI GCGATG 1 cut(s) 148
BtsCI GGATG 2 cut(s) 76, 343
BtsI GCAGTG 1 cut(s) 471
BtsIMutI CAGTG 4 cut(s) 244, 336, 344, 471
Cac8I GCNNGC 4 cut(s) 115, 119, 126, 414
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 3 cut(s) 159, 271, 272
Cfr9I CCCGGG 1 cut(s) 145
CseI GACGC 1 cut(s) 61
CviAII CATG 3 cut(s) 13, 266, 295
CviJI RGCY 9 cut(s) 5, 80, 99, 113, 121, 137, 273, 362, 393
CviKI_1 RGCY 9 cut(s) 5, 80, 99, 113, 121, 137, 273, 362, 393
DdeI CTNAG 1 cut(s) 395
DpnI GATC 4 cut(s) 24, 187, 456, 524
DpnII GATC 4 cut(s) 22, 185, 454, 522
Eam1104I CTCTTC 1 cut(s) 474
EarI CTCTTC 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 63, 275
Eco24I GRGCYC 1 cut(s) 275
Eco31I GGTCTC 2 cut(s) 197, 386
Eco47I GGWCC 1 cut(s) 159
Eco88I CYCGRG 1 cut(s) 145
EcoO109I RGGNCCY 2 cut(s) 271, 272
EcoRII CCWGG 2 cut(s) 90, 530
EcoT14I CCWWGG 2 cut(s) 63, 275
EcoT38I GRGCYC 1 cut(s) 275
ErhI CCWWGG 2 cut(s) 63, 275
FaeI CATG 3 cut(s) 16, 269, 298
FaqI GGGAC 2 cut(s) 172, 451
FatI CATG 3 cut(s) 12, 265, 294
FauI CCCGC 1 cut(s) 67
Fnu4HI GCNGC 3 cut(s) 81, 84, 122
FokI GGATG 2 cut(s) 83, 350
FriOI GRGCYC 1 cut(s) 275
Fsp4HI GCNGC 3 cut(s) 81, 84, 122
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 411
GluI GCNGC 3 cut(s) 81, 84, 122
GsuI CTGGAG 1 cut(s) 27
HaeIII GGCC 2 cut(s) 273, 393
HapII CCGG 2 cut(s) 146, 210
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 412
Hin1II CATG 3 cut(s) 16, 269, 298
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 4 cut(s) 47, 150, 607, 617
HpaII CCGG 2 cut(s) 146, 210
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 606
Hpy188I TCNGA 5 cut(s) 46, 185, 459, 522, 545
Hpy188III TCNNGA 1 cut(s) 611
Hpy8I GTNNAC 1 cut(s) 606
Hpy99I CGWCG 2 cut(s) 55, 512
HpyAV CCTTC 4 cut(s) 465, 469, 529, 568
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 3 cut(s) 265, 464, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 134, 368
HpyF3I CTNAG 1 cut(s) 395
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 3 cut(s) 16, 269, 298
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 4 cut(s) 22, 185, 454, 522
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 3 cut(s) 67, 70, 108
LweI GCATC 4 cut(s) 61, 196, 267, 437
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 1 cut(s) 342
MalI GATC 4 cut(s) 24, 187, 456, 524
MboI GATC 4 cut(s) 22, 185, 454, 522
MboII GAAGA 1 cut(s) 491
MfeI CAATTG 1 cut(s) 588
MflI RGATCY 2 cut(s) 454, 522
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 5 cut(s) 40, 230, 498, 588, 599
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 500
MnlI CCTC 5 cut(s) 328, 352, 369, 475, 483
MroXI GAANNNNTTC 1 cut(s) 539
MseI TTAA 1 cut(s) 630
MspI CCGG 2 cut(s) 146, 210
MspR9I CCNGG 4 cut(s) 92, 146, 147, 532
MunI CAATTG 1 cut(s) 588
Mva1269I GAATGC 2 cut(s) 412, 466
MvaI CCWGG 2 cut(s) 92, 532
MvnI CGCG 1 cut(s) 416
MwoI GCNNNNNNNGC 3 cut(s) 80, 134, 368
NciI CCSGG 2 cut(s) 146, 147
NdeII GATC 4 cut(s) 22, 185, 454, 522
NlaIII CATG 3 cut(s) 16, 269, 298
NlaIV GGNNCC 5 cut(s) 129, 160, 272, 273, 524
NmuCI GTSAC 1 cut(s) 342
PctI GAATGC 2 cut(s) 412, 466
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 3 cut(s) 47, 150, 617
PflMI CCANNNNNTGG 1 cut(s) 174
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 82, 85, 123
PleI GAGTC 1 cut(s) 601
PpsI GAGTC 1 cut(s) 601
Psp6I CCWGG 2 cut(s) 90, 530
PspGI CCWGG 2 cut(s) 90, 530
PspN4I GGNNCC 5 cut(s) 129, 160, 272, 273, 524
PspOMI GGGCCC 1 cut(s) 271
PspPI GGNCC 3 cut(s) 159, 271, 272
PsuI RGATCY 2 cut(s) 454, 522
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 3 cut(s) 81, 84, 122
Sau3AI GATC 4 cut(s) 22, 185, 454, 522
Sau96I GGNCC 3 cut(s) 159, 271, 272
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 4 cut(s) 92, 146, 147, 532
SduI GDGCHC 1 cut(s) 275
SetI ASST 4 cut(s) 82, 513, 533, 540
SfaNI GCATC 4 cut(s) 61, 196, 267, 437
SinI GGWCC 1 cut(s) 159
SmaI CCCGGG 1 cut(s) 147
Sse9I AATT 5 cut(s) 40, 230, 498, 588, 599
SsiI CCGC 5 cut(s) 29, 74, 245, 286, 526
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 4 cut(s) 90, 144, 145, 530
StyI CCWWGG 2 cut(s) 63, 275
TaaI ACNGT 1 cut(s) 239
TaiI ACGT 1 cut(s) 513
TaqI TCGA 3 cut(s) 50, 234, 507
TasI AATT 5 cut(s) 40, 230, 498, 588, 599
TfiI GAWTC 3 cut(s) 47, 150, 617
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 4 cut(s) 244, 336, 351, 471
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 3 cut(s) 80, 83, 121
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 2 cut(s) 29, 630
TspMI CCCGGG 1 cut(s) 145
TspRI CASTG 4 cut(s) 244, 336, 351, 471
Van91I CCANNNNNTGG 1 cut(s) 174
VpaK11BI GGWCC 1 cut(s) 159
XapI RAATTY 1 cut(s) 498
XmaI CCCGGG 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.