Rmu_sc0033428.1_g000001

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033428.1
OG0000532
Physical Location & Seq
Forward (+)
1 .. 596
596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033428.1_g000001.1.cds

Sequence Viewer

Length: 393 bp
ggacatgactactcttctggaatttggcaatttgaaggctatgcatatgtgcccagtggtacttctggggttacaatagtgcagattcatggtgcaactgaaggagctacaactctacaactaaggatgtatgaaggagacggtggagatctcagatactacagatacaacttagttgatactgatctctacgataagtggttcagagtgaacataatccacaatgttgacaaagggaaggtcatagttttcattgacggtgttaagaagtttgtggtgaaagatcagggaccaggggacctgtacttcaaatgtggggtgtatgctgcaccatttaattccagtaattacatggaatcaaggtggaaggagatcaaactttacaaaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

130

Amino Acids

14.87

Weight (kDa)

7.96

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 21
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 61, 305
AgsI TTSAA 2 cut(s) 35, 310
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 225, 257
AspS9I GGNCC 2 cut(s) 290, 298
AsuHPI GGTGA 1 cut(s) 289
AvaII GGWCC 2 cut(s) 290, 298
BaeGI GKGCMC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 313
BciT130I CCWGG 1 cut(s) 294
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 160
BglII AGATCT 1 cut(s) 148
BisI GCNGC 1 cut(s) 327
BlsI GCNGC 1 cut(s) 328
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 290, 298
BmgT120I GGNCC 2 cut(s) 290, 298
BmiI GGNNCC 2 cut(s) 291, 299
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 293
Bse1I ACTGG 2 cut(s) 54, 342
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 293
BseGI GGATG 1 cut(s) 132
BseJI GATNNNNATC 1 cut(s) 183
BseMII CTCAG 1 cut(s) 166
BseNI ACTGG 2 cut(s) 54, 342
BseSI GKGCMC 1 cut(s) 54
BseXI GCAGC 1 cut(s) 313
BsgI GTGCAG 2 cut(s) 101, 312
BslFI GGGAC 2 cut(s) 303, 311
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 303, 311
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 4 cut(s) 148, 184, 283, 372
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 291, 299
BsrI ACTGG 2 cut(s) 54, 342
BssECI CCNNGG 1 cut(s) 293
BssMI GATC 4 cut(s) 148, 184, 283, 372
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 143, 260
Bst6I CTCTTC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 122, 152, 172
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 4 cut(s) 151, 187, 286, 375
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 4 cut(s) 148, 184, 283, 372
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 160
BstSLI GKGCMC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 313
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 290, 298
Csp6I GTAC 2 cut(s) 60, 304
CviAII CATG 3 cut(s) 5, 89, 352
CviJI RGCY 2 cut(s) 39, 107
CviKI_1 RGCY 2 cut(s) 39, 107
CviQI GTAC 2 cut(s) 60, 304
DdeI CTNAG 3 cut(s) 122, 152, 172
DpnI GATC 4 cut(s) 150, 186, 285, 374
DpnII GATC 4 cut(s) 148, 184, 283, 372
Eam1104I CTCTTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 290, 298
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 3 cut(s) 8, 92, 355
FaqI GGGAC 2 cut(s) 303, 311
FatI CATG 3 cut(s) 4, 88, 351
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 1 cut(s) 327
FokI GGATG 1 cut(s) 139
Fsp4HI GCNGC 1 cut(s) 327
GluI GCNGC 1 cut(s) 327
Hin1II CATG 3 cut(s) 8, 92, 355
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 2 cut(s) 85, 356
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 211, 229
Hpy188I TCNGA 2 cut(s) 155, 206
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 211, 229
HpyAV CCTTC 5 cut(s) 29, 95, 128, 232, 361
HpyCH4III ACNGT 2 cut(s) 143, 260
HpyCH4V TGCA 4 cut(s) 44, 82, 95, 329
HpyF3I CTNAG 3 cut(s) 122, 152, 172
Hsp92II CATG 3 cut(s) 8, 92, 355
Kzo9I GATC 4 cut(s) 148, 184, 283, 372
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 8 cut(s) 3, 51, 67, 272, 279, 306, 314, 355
Lsp1109I GCAGC 1 cut(s) 313
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 150, 186, 285, 374
MboI GATC 4 cut(s) 148, 184, 283, 372
MboII GAAGA 1 cut(s) 6
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 4 cut(s) 21, 29, 337, 346
Mph1103I ATGCAT 1 cut(s) 46
MseI TTAA 2 cut(s) 264, 336
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
NdeI CATATG 1 cut(s) 46
NdeII GATC 4 cut(s) 148, 184, 283, 372
NlaIII CATG 3 cut(s) 8, 92, 355
NlaIV GGNNCC 2 cut(s) 291, 299
NsiI ATGCAT 1 cut(s) 46
PfeI GAWTC 2 cut(s) 85, 356
PkrI GCNGC 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 298
Psp5II RGGWCCY 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 291, 299
PspPI GGNCC 2 cut(s) 290, 298
PspPPI RGGWCCY 1 cut(s) 298
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 2 cut(s) 61, 305
RsaNI GTAC 2 cut(s) 60, 304
SaqAI TTAA 2 cut(s) 264, 336
SatI GCNGC 1 cut(s) 327
Sau3AI GATC 4 cut(s) 148, 184, 283, 372
Sau96I GGNCC 2 cut(s) 290, 298
ScrFI CCNGG 1 cut(s) 294
SduI GDGCHC 1 cut(s) 54
SetI ASST 4 cut(s) 109, 243, 303, 365
SfcI CTRYAG 1 cut(s) 160
SinI GGWCC 2 cut(s) 290, 298
Sse9I AATT 4 cut(s) 21, 29, 337, 346
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 143, 260
TasI AATT 4 cut(s) 21, 29, 337, 346
TatI WGTACW 1 cut(s) 303
TfiI GAWTC 2 cut(s) 85, 356
Tru1I TTAA 2 cut(s) 264, 336
Tru9I TTAA 2 cut(s) 264, 336
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 77, 147, 241
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 2 cut(s) 290, 298
XapI RAATTY 1 cut(s) 21
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.