Prupe.8G032900_v2.0.a1

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000532
Physical Location & Seq
Reverse (-)
3084755 .. 3085889
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G032900.1

Sequence Viewer

Length: 576 bp
CTGTGCGCTTCTGATCCTACTGATGGCTTCACGCGTGTGTCATTGGCTGCACAAAACCTCAAGTTACAGATACCATATGACAAGTCTCCGGCGGATCGTTACAGCAGAGTCGATGGAGTTGAGAGGTTTTGGGTCGACACCAATGACAAGCCCTTTAAACAAGGCAGTCCAACCAGGCCACGCACAGAGATAAGAATTTCTGGATATGACTACACATCTGGAGTTTGGCAATTTGAGGGCAATTTCTATGTGCCACAAGGCAGCTCGATAATGCAGATCCATGGTGCAGCGACTGAAGCTACAACACTGCAACTGAGGGTGTATAACGGGGATCTCAAGTACAATGGAAACACTGTGGTGGCTTCAAATATCTACGACAAATGGCTCAGACTCAATGTCATTCACAATGTTGGTGCTGGAAAGGTCACCATTTTTATCGACGGCAAGCAAAAGCTTGTCGTAAATGGTCCCAGCCGAGCTAACTTTTACTTCAAGTATGGGGTTTATGGTGCCTTGTCTGCTTCAAGTAACTACATGGAATCTAGGTCGAAGGAGGTCAAACTTTTCAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

192

Amino Acids

21.46

Weight (kDa)

9.5

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 509
AccI GTMKAC 1 cut(s) 135
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 92
AclWI GGATC 4 cut(s) 8, 102, 271, 339
AcsI RAATTY 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 32
AgsI TTSAA 4 cut(s) 366, 493, 525, 568
AhdI GACNNNNNGTC 1 cut(s) 395
AjnI CCWGG 1 cut(s) 173
AleI CACNNNNGTG 2 cut(s) 35, 356
AluBI AGCT 4 cut(s) 264, 299, 454, 479
AluI AGCT 4 cut(s) 264, 299, 454, 479
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 4 cut(s) 8, 102, 271, 339
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 47, 261, 287
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 467
AsuHPI GGTGA 1 cut(s) 418
AvaII GGWCC 1 cut(s) 467
BanI GGYRCC 1 cut(s) 509
BbvI GCAGC 3 cut(s) 34, 273, 299
BccI CCATC 2 cut(s) 17, 107
BceAI ACGGC 1 cut(s) 457
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 90
BfaI CTAG 1 cut(s) 543
BisI GCNGC 3 cut(s) 48, 262, 288
BlsI GCNGC 3 cut(s) 49, 263, 289
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 467
BmeRI GACNNNNNGTC 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 467
BmiI GGNNCC 2 cut(s) 469, 511
BmrFI CCNGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 240
BpuEI CTTGAG 2 cut(s) 44, 320
BsaJI CCNNGG 1 cut(s) 280
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 280
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 2 cut(s) 305, 400
BseXI GCAGC 3 cut(s) 34, 273, 299
BseYI CCCAGC 1 cut(s) 470
BsgI GTGCAG 2 cut(s) 33, 306
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 178
BshNI GGYRCC 1 cut(s) 509
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 1 cut(s) 178
Bsp143I GATC 4 cut(s) 13, 94, 276, 331
Bsp19I CCATGG 1 cut(s) 280
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 178
BspCNI CTCAG 2 cut(s) 306, 399
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 2 cut(s) 469, 511
BspPI GGATC 4 cut(s) 8, 102, 271, 339
BspT107I GGYRCC 1 cut(s) 509
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 4 cut(s) 13, 94, 276, 331
BssT1I CCWWGG 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 446
BstDEI CTNAG 2 cut(s) 314, 386
BstDSI CCRYGG 1 cut(s) 280
BstEII GGTNACC 1 cut(s) 424
BstFNI CGCG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 4 cut(s) 16, 97, 279, 334
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 4 cut(s) 13, 94, 276, 331
BstMWI GCNNNNNNNGC 2 cut(s) 296, 518
BstNI CCWGG 1 cut(s) 175
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 1 cut(s) 173
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 34, 273, 299
BstX2I RGATCY 2 cut(s) 276, 331
BstYI RGATCY 2 cut(s) 276, 331
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 305
BtsIMutI CAGTG 2 cut(s) 305, 351
Cac8I GCNNGC 1 cut(s) 446
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 340
CviAII CATG 2 cut(s) 281, 535
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 2 cut(s) 314, 386
DpnI GATC 4 cut(s) 15, 96, 278, 333
DpnII GATC 4 cut(s) 13, 94, 276, 331
DraI TTTAAA 1 cut(s) 157
DriI GACNNNNNGTC 1 cut(s) 395
Eam1105I GACNNNNNGTC 1 cut(s) 395
EciI GGCGGA 1 cut(s) 107
Eco130I CCWWGG 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 467
Eco57I CTGAAG 1 cut(s) 315
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 284, 538
FaiI YATR 9 cut(s) 76, 78, 207, 249, 282, 324, 498, 507, 536
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 280, 534
FauNDI CATATG 1 cut(s) 76
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 48, 262, 288
Fsp4HI GCNGC 3 cut(s) 48, 262, 288
FspBI CTAG 1 cut(s) 543
GlaI GCGC 1 cut(s) 7
GluI GCNGC 3 cut(s) 48, 262, 288
GsaI CCCAGC 1 cut(s) 474
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 89
HhaI GCGC 1 cut(s) 8
Hin1II CATG 2 cut(s) 284, 538
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 3 cut(s) 108, 390, 539
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 2 cut(s) 13, 389
Hpy188III TCNNGA 3 cut(s) 201, 219, 568
Hpy8I GTNNAC 1 cut(s) 136
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 4 cut(s) 50, 274, 287, 310
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 518
HpyF3I CTNAG 2 cut(s) 314, 386
Hsp92II CATG 2 cut(s) 284, 538
HspAI GCGC 1 cut(s) 6
Kzo9I GATC 4 cut(s) 13, 94, 276, 331
LpnPI CCDG 7 cut(s) 102, 160, 186, 187, 204, 402, 484
Lsp1109I GCAGC 3 cut(s) 34, 273, 299
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 4 cut(s) 63, 98, 424, 527
MalI GATC 4 cut(s) 15, 96, 278, 333
MboI GATC 4 cut(s) 13, 94, 276, 331
MflI RGATCY 2 cut(s) 276, 331
MluCI AATT 3 cut(s) 195, 230, 241
MluI ACGCGT 1 cut(s) 32
MlyI GAGTC 2 cut(s) 117, 384
MmeI TCCRAC 1 cut(s) 194
MnlI CCTC 5 cut(s) 68, 117, 229, 309, 547
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 2 cut(s) 35, 356
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 296, 518
NcoI CCATGG 1 cut(s) 280
NdeI CATATG 1 cut(s) 76
NdeII GATC 4 cut(s) 13, 94, 276, 331
NlaIII CATG 2 cut(s) 284, 538
NlaIV GGNNCC 2 cut(s) 469, 511
NmeAIII GCCGAG 1 cut(s) 500
NmuCI GTSAC 1 cut(s) 424
OliI CACNNNNGTG 2 cut(s) 35, 356
PfeI GAWTC 1 cut(s) 539
PkrI GCNGC 3 cut(s) 49, 263, 289
PleI GAGTC 2 cut(s) 116, 384
PpsI GAGTC 2 cut(s) 116, 384
Psp6I CCWGG 1 cut(s) 173
PspEI GGTNACC 1 cut(s) 424
PspFI CCCAGC 1 cut(s) 470
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 469, 511
PspPI GGNCC 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 293
PsuI RGATCY 2 cut(s) 276, 331
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 35, 356
SalI GTCGAC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 48, 262, 288
Sau3AI GATC 4 cut(s) 13, 94, 276, 331
Sau96I GGNCC 1 cut(s) 467
SchI GAGTC 2 cut(s) 117, 384
ScrFI CCNGG 1 cut(s) 175
SetI ASST 9 cut(s) 60, 128, 266, 301, 426, 456, 481, 548, 558
SinI GGWCC 1 cut(s) 467
SmiMI CAYNNNNRTG 2 cut(s) 35, 356
SmlI CTYRAG 2 cut(s) 59, 335
SmoI CTYRAG 2 cut(s) 59, 335
Sse9I AATT 3 cut(s) 195, 230, 241
SsiI CCGC 1 cut(s) 92
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 280
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 5 cut(s) 111, 135, 266, 438, 548
TasI AATT 3 cut(s) 195, 230, 241
TatI WGTACW 1 cut(s) 339
TfiI GAWTC 1 cut(s) 539
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 312, 358
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 3 cut(s) 47, 261, 287
Tsp45I GTSAC 1 cut(s) 424
TspRI CASTG 2 cut(s) 312, 358
VpaK11BI GGWCC 1 cut(s) 467
XapI RAATTY 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.