Rroxscaffold_2G00081650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000532
Physical Location & Seq
Forward (+)
4686370 .. 4690072
3703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00081650.1

Sequence Viewer

Length: 465 bp
ATGGGAAGGATCGGTCCATGCAACGCCGGAAATCGTGTTTTCCGCCGGTCGGGTCGTGCGGACCGTGGCCTTCTTCGATCCAAGCTTGGGAGCGACGGCGGAGCAAAGCGGTGGCACCGGGCGGGCCGGGCGGCGTGGTCCGAGCACAAGGAGGGCGGGTCCGCGGCGGAGGTGGCCGAGGAGGAAGAAAAAGCCGGTCGGGTCGAGCTTGACCCGCCGGGTGGTGAGGTTTTGATGTCGGCCGGCAACATGACACATGGCGAAGAGGTGCTATCCTCACTTGGAAACTCCGCAGTGGCTTCGTTTCTTTCCCGCATTGAGTCTCTCGGTGGAGAAGAGAAACGGTTATACGGTTCTCATCCCTTCGATTTGGCACTTCTCGCGACCTTTTGGCTCCCGAAGGCAGCTGTGGTAGTGGCGGATGCGCATGTTAACATTGTAGGAGATGATTTTATTGTTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.38

Weight (kDa)

6.21

Isoelectric Point (pI)

53.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 426
AccB1I GGYRCC 1 cut(s) 114
AccII CGCG 2 cut(s) 164, 383
AclWI GGATC 2 cut(s) 17, 72
AcoI YGGCCR 2 cut(s) 174, 240
AfiI CCNNNNNNNGG 3 cut(s) 49, 87, 221
AluBI AGCT 3 cut(s) 85, 208, 407
AluI AGCT 3 cut(s) 85, 208, 407
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 1 cut(s) 327
AlwI GGATC 2 cut(s) 17, 72
AoxI GGCC 4 cut(s) 67, 124, 174, 240
ApeKI GCWGC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 5 cut(s) 14, 61, 124, 138, 159
AsuC2I CCSGG 3 cut(s) 119, 128, 219
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 4 cut(s) 14, 61, 138, 159
BanI GGYRCC 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 416
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 282, 316
BcnI CCSGG 3 cut(s) 119, 128, 219
BcoDI GTCTC 1 cut(s) 327
BisI GCNGC 3 cut(s) 132, 165, 405
BlsI GCNGC 3 cut(s) 133, 166, 406
Bme1390I CCNGG 3 cut(s) 119, 128, 219
Bme18I GGWCC 4 cut(s) 14, 61, 138, 159
BmgT120I GGNCC 5 cut(s) 14, 61, 124, 138, 159
BmiI GGNNCC 3 cut(s) 116, 160, 395
BmrFI CCNGG 3 cut(s) 119, 128, 219
BmsI GCATC 1 cut(s) 412
BpuMI CCSGG 3 cut(s) 119, 128, 219
BsaJI CCNNGG 3 cut(s) 64, 162, 177
BsaXI ACNNNNNCTCC 2 cut(s) 143, 173
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 87, 221
Bse118I RCCGGY 3 cut(s) 45, 194, 242
BseDI CCNNGG 3 cut(s) 64, 162, 177
BseGI GGATG 2 cut(s) 358, 427
BseLI CCNNNNNNNGG 3 cut(s) 49, 87, 221
BseRI GAGGAG 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 416
Bsh1236I CGCG 2 cut(s) 164, 383
Bsh1285I CGRYCG 3 cut(s) 50, 199, 243
BshFI GGCC 4 cut(s) 69, 126, 176, 242
BshNI GGYRCC 1 cut(s) 114
BsiEI CGRYCG 3 cut(s) 50, 199, 243
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 7 cut(s) 27, 46, 118, 127, 195, 218, 243
BslI CCNNNNNNNGG 3 cut(s) 49, 87, 221
BsmAI GTCTC 1 cut(s) 327
BsnI GGCC 4 cut(s) 69, 126, 176, 242
Bsp1286I GDGCHC 1 cut(s) 147
Bsp143I GATC 2 cut(s) 9, 77
Bsp68I TCGCGA 1 cut(s) 383
BspANI GGCC 4 cut(s) 69, 126, 176, 242
BspFNI CGCG 2 cut(s) 164, 383
BspLI GGNNCC 3 cut(s) 116, 160, 395
BspPI GGATC 2 cut(s) 17, 72
BspT107I GGYRCC 1 cut(s) 114
BsrFI RCCGGY 3 cut(s) 45, 194, 242
BssAI RCCGGY 3 cut(s) 45, 194, 242
BssECI CCNNGG 3 cut(s) 64, 162, 177
BssMI GATC 2 cut(s) 9, 77
Bst4CI ACNGT 3 cut(s) 65, 345, 353
Bst6I CTCTTC 2 cut(s) 258, 330
BstC8I GCNNGC 2 cut(s) 124, 244
BstDSI CCRYGG 2 cut(s) 64, 162
BstF5I GGATG 2 cut(s) 358, 427
BstFNI CGCG 2 cut(s) 164, 383
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 2 cut(s) 12, 80
BstMAI GTCTC 1 cut(s) 327
BstMBI GATC 2 cut(s) 9, 77
BstMCI CGRYCG 3 cut(s) 50, 199, 243
BstMWI GCNNNNNNNGC 4 cut(s) 128, 173, 214, 380
BstNSI RCATGY 1 cut(s) 431
BstSCI CCNGG 3 cut(s) 117, 126, 217
BstUI CGCG 2 cut(s) 164, 383
BstV1I GCAGC 1 cut(s) 416
BstZI CGGCCG 1 cut(s) 240
BsuRI GGCC 4 cut(s) 69, 126, 176, 242
BtgI CCRYGG 2 cut(s) 64, 162
BtsCI GGATG 2 cut(s) 358, 427
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
BtuMI TCGCGA 1 cut(s) 383
Cac8I GCNNGC 2 cut(s) 124, 244
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 3 cut(s) 45, 194, 242
Cfr13I GGNCC 5 cut(s) 14, 61, 124, 138, 159
Cfr42I CCGCGG 1 cut(s) 165
CpoI CGGWCCG 1 cut(s) 61
CspI CGGWCCG 1 cut(s) 61
CviAII CATG 4 cut(s) 18, 250, 257, 428
DpnI GATC 2 cut(s) 11, 79
DpnII GATC 2 cut(s) 9, 77
EaeI YGGCCR 2 cut(s) 174, 240
EagI CGGCCG 1 cut(s) 240
Eam1104I CTCTTC 2 cut(s) 258, 330
EarI CTCTTC 2 cut(s) 258, 330
EciI GGCGGA 4 cut(s) 32, 114, 182, 434
EclXI CGGCCG 1 cut(s) 240
Eco47I GGWCC 4 cut(s) 14, 61, 138, 159
Eco52I CGGCCG 1 cut(s) 240
FaeI CATG 4 cut(s) 21, 253, 260, 431
FaiI YATR 5 cut(s) 19, 251, 258, 349, 429
FatI CATG 4 cut(s) 17, 249, 256, 427
FauI CCCGC 4 cut(s) 115, 149, 222, 320
Fnu4HI GCNGC 3 cut(s) 132, 165, 405
FokI GGATG 2 cut(s) 345, 434
Fsp4HI GCNGC 3 cut(s) 132, 165, 405
FspAI RTGCGCAY 1 cut(s) 426
FspI TGCGCA 1 cut(s) 426
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 132, 165, 405
HaeIII GGCC 4 cut(s) 69, 126, 176, 242
HapII CCGG 7 cut(s) 27, 46, 118, 127, 195, 218, 243
HhaI GCGC 1 cut(s) 427
Hin1II CATG 4 cut(s) 21, 253, 260, 431
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 320
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 7 cut(s) 27, 46, 118, 127, 195, 218, 243
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 382, 397
Hpy8I GTNNAC 1 cut(s) 433
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 80, 373, 394
HpyCH4III ACNGT 3 cut(s) 65, 345, 353
HpyCH4V TGCA 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 173, 214, 380
Hsp92II CATG 4 cut(s) 21, 253, 260, 431
HspAI GCGC 1 cut(s) 425
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
KspAI GTTAAC 1 cut(s) 433
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 2 cut(s) 9, 77
LmnI GCTCC 3 cut(s) 90, 101, 399
LpnPI CCDG 7 cut(s) 40, 59, 131, 140, 208, 231, 256
Lsp1109I GCAGC 1 cut(s) 416
LweI GCATC 1 cut(s) 412
MalI GATC 2 cut(s) 11, 79
MboI GATC 2 cut(s) 9, 77
MboII GAAGA 4 cut(s) 65, 197, 275, 347
MhlI GDGCHC 1 cut(s) 147
MlyI GAGTC 1 cut(s) 329
MnlI CCTC 7 cut(s) 145, 163, 172, 175, 220, 259, 286
MroNI GCCGGC 1 cut(s) 242
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 164, 407
MspI CCGG 7 cut(s) 27, 46, 118, 127, 195, 218, 243
MspR9I CCNGG 3 cut(s) 119, 128, 219
MvnI CGCG 2 cut(s) 164, 383
MwoI GCNNNNNNNGC 4 cut(s) 128, 173, 214, 380
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 3 cut(s) 119, 128, 219
NdeII GATC 2 cut(s) 9, 77
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 4 cut(s) 21, 253, 260, 431
NlaIV GGNNCC 3 cut(s) 116, 160, 395
NmeAIII GCCGAG 1 cut(s) 202
NruI TCGCGA 1 cut(s) 383
NsbI TGCGCA 1 cut(s) 426
NspI RCATGY 1 cut(s) 431
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PdiI GCCGGC 1 cut(s) 244
PkrI GCNGC 3 cut(s) 133, 166, 406
PleI GAGTC 1 cut(s) 328
PpsI GAGTC 1 cut(s) 328
PspN4I GGNNCC 3 cut(s) 116, 160, 395
PspPI GGNCC 5 cut(s) 14, 61, 124, 138, 159
PvuII CAGCTG 1 cut(s) 407
RruI TCGCGA 1 cut(s) 383
Rsr2I CGGWCCG 1 cut(s) 61
RsrII CGGWCCG 1 cut(s) 61
SacII CCGCGG 1 cut(s) 165
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 132, 165, 405
Sau3AI GATC 2 cut(s) 9, 77
Sau96I GGNCC 5 cut(s) 14, 61, 124, 138, 159
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 3 cut(s) 119, 128, 219
SduI GDGCHC 1 cut(s) 147
SetI ASST 7 cut(s) 87, 174, 210, 231, 270, 389, 409
SfaNI GCATC 1 cut(s) 412
Sfr303I CCGCGG 1 cut(s) 165
SgrBI CCGCGG 1 cut(s) 165
SinI GGWCC 4 cut(s) 14, 61, 138, 159
StyD4I CCNGG 3 cut(s) 117, 126, 217
TaaI ACNGT 3 cut(s) 65, 345, 353
TaqI TCGA 3 cut(s) 76, 204, 366
TauI GCSGC 2 cut(s) 134, 167
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 404
TspRI CASTG 1 cut(s) 300
VpaK11BI GGWCC 4 cut(s) 14, 61, 138, 159
XceI RCATGY 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.