Rh2DG287600

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000532
Physical Location & Seq
Forward (+)
33491070 .. 33494251
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG287600.1

Sequence Viewer

Length: 666 bp
ATGGGTGCCCATATAAACCACATTGCTTTGGCATGCACAACGTTTTATCTTGTCCTAACACAATGGTCCAGCAGCTGGCCTGTGGACGATCCAACCCTTGGCTTCCTAGAACTCCCACTAAACACATCCAATTTGGACATCCAGAGACCATATGACTTGCCACTAAGTGAGCGCTATAGCTTCGTGGATGGAGTGCACAAGCTATGGGTATACTTCACTGACAAGCCCCACTCCCCGGAGAGCCAGACTCATGCTCGAACCGAAATTCGAATAAGGGGATACGATTATTCTTCAGGTGTATGGCAATTCGAAGGATACGGGTACGTACCATGTGGAACAGCCAATGTGACCATAATGCAAGTGTTTGGGGCAAGCCCTCACGCAACCACTCTAATGCTTAGAGTTGGTTCAAATGGTACCCTTACATACTATAGGACTGCAGTCCTGGATCCTTACATTTATGACAGATGGTTCCGAGTTAATGTAATCCACGATGTCTACGCCTCGCATTTGAAGGTTTATATCGATGGAGTTCTCAAATTAGAGGCTCCCGGTCGCGGAGGAAAGTTTCATTATTTTAAATGCGGCGTCTACTCTCAGCCCGATGGTTCTTACTACATGGAGTCTCGTTGGAAAGGGATCAAGGTGCTGAAAAAATGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

221

Amino Acids

25.3

Weight (kDa)

7.71

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alginate_lyase2 PF08787 41 - 216 1.7e-26 Alginate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 5, 416
AccB7I CCANNNNNTGG 2 cut(s) 75, 98
AccI GTMKAC 3 cut(s) 210, 498, 591
AccII CGCG 1 cut(s) 558
AciI CCGC 2 cut(s) 558, 585
AclI AACGTT 1 cut(s) 41
AclWI GGATC 4 cut(s) 83, 443, 456, 647
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 588
AdeI CACNNNGTG 1 cut(s) 167
AfaI GTAC 3 cut(s) 323, 327, 418
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 4 cut(s) 75, 98, 235, 557
AgsI TTSAA 2 cut(s) 411, 514
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 3 cut(s) 75, 180, 202
AluI AGCT 3 cut(s) 75, 180, 202
Alw21I GWGCWC 1 cut(s) 198
Alw26I GTCTC 2 cut(s) 139, 630
Alw44I GTGCAC 1 cut(s) 194
AlwI GGATC 4 cut(s) 83, 443, 456, 647
AlwNI CAGNNNCTG 1 cut(s) 75
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 1 cut(s) 77
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 264
Asp718I GGTACC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 2 cut(s) 236, 552
AsuII TTCGAA 2 cut(s) 268, 309
AvaII GGWCC 1 cut(s) 66
BaeGI GKGCMC 2 cut(s) 10, 198
BamHI GGATCC 1 cut(s) 448
BanI GGYRCC 2 cut(s) 5, 416
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 84
BccI CCATC 4 cut(s) 182, 462, 521, 599
BciT130I CCWGG 1 cut(s) 446
BciVI GTATCC 2 cut(s) 272, 308
BcnI CCSGG 2 cut(s) 236, 552
BcoDI GTCTC 2 cut(s) 139, 630
BfaI CTAG 1 cut(s) 107
BfmI CTRYAG 3 cut(s) 175, 430, 438
BfoI RGCGCY 1 cut(s) 175
BfuI GTATCC 2 cut(s) 272, 308
BisI GCNGC 2 cut(s) 73, 586
BlsI GCNGC 2 cut(s) 74, 587
Bme1390I CCNGG 3 cut(s) 236, 446, 552
Bme18I GGWCC 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 66
BmiI GGNNCC 5 cut(s) 7, 418, 450, 473, 549
BmrFI CCNGG 3 cut(s) 236, 446, 552
BoxI GACNNNNGTC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 232, 264
Bpu14I TTCGAA 2 cut(s) 268, 309
BpuMI CCSGG 2 cut(s) 236, 552
Bsa29I ATCGAT 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 325
BsaHI GRCGYC 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 139
BsaJI CCNNGG 2 cut(s) 97, 234
Bsc4I CCNNNNNNNGG 4 cut(s) 75, 98, 235, 557
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 446
BseCI ATCGAT 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 97, 234
BseGI GGATG 3 cut(s) 125, 138, 193
BseLI CCNNNNNNNGG 4 cut(s) 75, 98, 235, 557
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 1 cut(s) 611
BseSI GKGCMC 2 cut(s) 10, 198
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 556
BshFI GGCC 1 cut(s) 79
BshNI GGYRCC 2 cut(s) 5, 416
BshVI ATCGAT 1 cut(s) 525
BsiEI CGRYCG 1 cut(s) 556
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 236, 552
BslI CCNNNNNNNGG 4 cut(s) 75, 98, 235, 557
BsmAI GTCTC 2 cut(s) 139, 630
BsnI GGCC 1 cut(s) 79
Bso31I GGTCTC 1 cut(s) 139
Bsp119I TTCGAA 2 cut(s) 268, 309
Bsp1286I GDGCHC 2 cut(s) 10, 198
Bsp143I GATC 3 cut(s) 88, 448, 639
BspACI CCGC 2 cut(s) 558, 585
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 610
BspDI ATCGAT 1 cut(s) 525
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 5 cut(s) 7, 418, 450, 473, 549
BspMAI CTGCAG 1 cut(s) 442
BspPI GGATC 4 cut(s) 83, 443, 456, 647
BspT104I TTCGAA 2 cut(s) 268, 309
BspT107I GGYRCC 2 cut(s) 5, 416
BspTNI GGTCTC 1 cut(s) 139
BsrDI GCAATG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 97, 234
BssMI GATC 3 cut(s) 88, 448, 639
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 1 cut(s) 588
BssT1I CCWWGG 1 cut(s) 97
Bst1107I GTATAC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 446
BstACI GRCGYC 1 cut(s) 588
BstBAI YACGTR 1 cut(s) 325
BstBI TTCGAA 2 cut(s) 268, 309
BstC8I GCNNGC 3 cut(s) 34, 77, 373
BstDEI CTNAG 3 cut(s) 164, 398, 597
BstF5I GGATG 3 cut(s) 125, 138, 193
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 3 cut(s) 91, 451, 642
BstMAI GTCTC 2 cut(s) 139, 630
BstMBI GATC 3 cut(s) 88, 448, 639
BstMCI CGRYCG 1 cut(s) 556
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 36
BstPAI GACNNNNGTC 1 cut(s) 440
BstSCI CCNGG 3 cut(s) 234, 444, 550
BstSFI CTRYAG 3 cut(s) 175, 430, 438
BstSLI GKGCMC 2 cut(s) 10, 198
BstSNI TACGTA 1 cut(s) 325
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 448
BstYI RGATCY 1 cut(s) 448
BstZ17I GTATAC 1 cut(s) 211
Bsu15I ATCGAT 1 cut(s) 525
BsuI GTATCC 2 cut(s) 272, 308
BsuRI GGCC 1 cut(s) 79
BsuTUI ATCGAT 1 cut(s) 525
BtsCI GGATG 3 cut(s) 125, 138, 193
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 34, 77, 373
CaiI CAGNNNCTG 1 cut(s) 75
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 66
ClaI ATCGAT 1 cut(s) 525
CseI GACGC 1 cut(s) 577
Csp6I GTAC 3 cut(s) 322, 326, 417
CviAII CATG 4 cut(s) 33, 251, 330, 619
CviQI GTAC 3 cut(s) 322, 326, 417
DdeI CTNAG 3 cut(s) 164, 398, 597
DpnI GATC 3 cut(s) 90, 450, 641
DpnII GATC 3 cut(s) 88, 448, 639
DraI TTTAAA 1 cut(s) 580
DraIII CACNNNGTG 1 cut(s) 167
Eco105I TACGTA 1 cut(s) 325
Eco130I CCWWGG 1 cut(s) 97
Eco31I GGTCTC 1 cut(s) 139
Eco47I GGWCC 1 cut(s) 66
Eco47III AGCGCT 1 cut(s) 173
Eco57I CTGAAG 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 97
ErhI CCWWGG 1 cut(s) 97
FaeI CATG 4 cut(s) 36, 254, 333, 622
FatI CATG 4 cut(s) 32, 250, 329, 618
FauNDI CATATG 1 cut(s) 151
FblI GTMKAC 3 cut(s) 210, 498, 591
Fnu4HI GCNGC 2 cut(s) 73, 586
FokI GGATG 3 cut(s) 112, 125, 200
Fsp4HI GCNGC 2 cut(s) 73, 586
FspBI CTAG 1 cut(s) 107
GlaI GCGC 1 cut(s) 173
GluI GCNGC 2 cut(s) 73, 586
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 1 cut(s) 79
HapII CCGG 2 cut(s) 236, 552
HgaI GACGC 1 cut(s) 577
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 588
Hin1II CATG 4 cut(s) 36, 254, 333, 622
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HinfI GANTC 2 cut(s) 247, 623
HpaII CCGG 2 cut(s) 236, 552
Hpy166II GTNNAC 5 cut(s) 85, 196, 211, 499, 592
Hpy188I TCNGA 1 cut(s) 476
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 5 cut(s) 85, 196, 211, 499, 592
HpyAV CCTTC 2 cut(s) 305, 508
HpyCH4IV ACGT 2 cut(s) 41, 324
HpyCH4V TGCA 4 cut(s) 36, 196, 358, 440
HpyF3I CTNAG 3 cut(s) 164, 398, 597
HpySE526I ACGT 2 cut(s) 41, 324
Hsp92I GRCGYC 1 cut(s) 588
Hsp92II CATG 4 cut(s) 36, 254, 333, 622
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 88, 448, 639
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 1 cut(s) 84
MaeI CTAG 1 cut(s) 107
MaeII ACGT 2 cut(s) 41, 324
MaeIII GTNAC 2 cut(s) 346, 659
MalI GATC 3 cut(s) 90, 450, 641
MboI GATC 3 cut(s) 88, 448, 639
MboII GAAGA 1 cut(s) 282
MflI RGATCY 1 cut(s) 448
MhlI GDGCHC 2 cut(s) 10, 198
MluCI AATT 4 cut(s) 130, 264, 305, 539
MlyI GAGTC 2 cut(s) 241, 632
MmeI TCCRAC 2 cut(s) 116, 611
MnlI CCTC 4 cut(s) 387, 514, 538, 554
MseI TTAA 2 cut(s) 480, 579
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 75
MspI CCGG 2 cut(s) 236, 552
MspR9I CCNGG 3 cut(s) 236, 446, 552
MvaI CCWGG 1 cut(s) 446
MvnI CGCG 1 cut(s) 558
NciI CCSGG 2 cut(s) 236, 552
NdeI CATATG 1 cut(s) 151
NdeII GATC 3 cut(s) 88, 448, 639
NlaIII CATG 4 cut(s) 36, 254, 333, 622
NlaIV GGNNCC 5 cut(s) 7, 418, 450, 473, 549
NmuCI GTSAC 2 cut(s) 346, 659
NspI RCATGY 1 cut(s) 36
NspV TTCGAA 2 cut(s) 268, 309
PaeI GCATGC 1 cut(s) 36
PflMI CCANNNNNTGG 2 cut(s) 75, 98
PfoI TCCNGGA 1 cut(s) 444
PkrI GCNGC 2 cut(s) 74, 587
PleI GAGTC 2 cut(s) 241, 631
PpsI GAGTC 2 cut(s) 241, 631
Ppu21I YACGTR 1 cut(s) 325
PshAI GACNNNNGTC 1 cut(s) 440
Psp1406I AACGTT 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 5 cut(s) 7, 418, 450, 473, 549
PspPI GGNCC 1 cut(s) 66
PstI CTGCAG 1 cut(s) 442
PstNI CAGNNNCTG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 448
PvuII CAGCTG 1 cut(s) 75
RsaI GTAC 3 cut(s) 323, 327, 418
RsaNI GTAC 3 cut(s) 322, 326, 417
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 480, 579
SatI GCNGC 2 cut(s) 73, 586
Sau3AI GATC 3 cut(s) 88, 448, 639
Sau96I GGNCC 1 cut(s) 66
SchI GAGTC 2 cut(s) 241, 632
ScrFI CCNGG 3 cut(s) 236, 446, 552
SduI GDGCHC 2 cut(s) 10, 198
SetI ASST 8 cut(s) 44, 77, 182, 204, 298, 327, 519, 648
SfcI CTRYAG 3 cut(s) 175, 430, 438
SfuI TTCGAA 2 cut(s) 268, 309
SinI GGWCC 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 392
SnaBI TACGTA 1 cut(s) 325
SphI GCATGC 1 cut(s) 36
Sse9I AATT 4 cut(s) 130, 264, 305, 539
SsiI CCGC 2 cut(s) 558, 585
SspMI CTAG 1 cut(s) 107
StyD4I CCNGG 3 cut(s) 234, 444, 550
StyI CCWWGG 1 cut(s) 97
TaiI ACGT 2 cut(s) 44, 327
TaqI TCGA 4 cut(s) 256, 268, 309, 525
TasI AATT 4 cut(s) 130, 264, 305, 539
TauI GCSGC 1 cut(s) 588
Tru1I TTAA 2 cut(s) 480, 579
Tru9I TTAA 2 cut(s) 480, 579
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 2 cut(s) 346, 659
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 2 cut(s) 346, 659
TspDTI ATGAA 1 cut(s) 560
TspRI CASTG 1 cut(s) 223
Van91I CCANNNNNTGG 2 cut(s) 75, 98
VneI GTGCAC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 66
XapI RAATTY 1 cut(s) 264
XceI RCATGY 1 cut(s) 36
XmiI GTMKAC 3 cut(s) 210, 498, 591
XspI CTAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.