FvH4_2g13520

Citrate-binding protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000532
Physical Location & Seq
Forward (+)
11809119 .. 11810093
975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13520.t1

Sequence Viewer

Length: 663 bp
ATGAATTCGTTCTGCTACAAGTTGTTGTGTTTGCTCCTTCTGAGCTACTTCTTCGAAGGCCTCTATCTTTGCGCTGCTGATGATCCAACTGATGGGTTCACCCTTGTGCCATTAACAGAAGACAACTTCAAGCTGCAAAAGCCATATAATGAACCTCTTTATGATCGTTATAGTTACAAAGATGGAGTCCGAAGATTCTGGATCTACAACAATGACAAGCCCTACAGCGCAGATAGCCCAACAAGACCACGCTCAGAACTGCGCATATCGGGACATGATTATTCGTCTGGAATCTGGCAATTTGAAGGCTATGCATATGTTCCAAGTGGTACTTCTGGGGTTACAATAGTGCAGATTCATGGTGCAAGTGAGGGAGCTACAACTCTACAACTAAGGATGTATGAAGGAGACGGTGGAGATCTCAGATACTACAGATACAACTTAGTTGATACTGATCTCTATGATAAGTGGTTCAGAGTAAATATAATCCACAATGTTGACAAAGGGAAGGTCATAGTTTTCATTGACGGTGTTAAGAAGTTTGTGGTGAAAGATCAGGGACCAGGAGACCTCTACTTCAAATGTGGTGTGTATGCAGCACCATTTAATTCTAGTAACTACATGGAATCAAGGTGGAAGGGCATCAAACTTTATAAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Alginate_lyase2

Protein Analysis

221

Amino Acids

25.45

Weight (kDa)

7.58

Isoelectric Point (pI)

34.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alginate_lyase2 PF08787 41 - 218 9e-27 Alginate lyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000532)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23820 FvH4_1g23821 FvH4_1g23860 FvH4_1g23860 FvH4_2g13510 FvH4_2g13513 FvH4_2g13520 FvH4_2g13550
malus_domestica MD05G1029900.v1.1 MD07G1183700.v1.1 MD10G1027700.v1.1 MD10G1027900.v1.1 MD10G1028300.v1.1 MD10G1030500.v1.1 MD10G1031000.v1.1 MD10G1031300.v1.1 MD15G1341000.v1.1
prunus_persica Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.6G161900_v2.0.a1 Prupe.8G032800_v2.0.a1 Prupe.8G032900_v2.0.a1 Prupe.8G033100_v2.0.a1
pyrus_communis pycom01g03170
rosa_chinensis RchiOBHm_Chr2g0119701 RchiOBHm_Chr2g0119711 RchiOBHm_Chr2g0119741 RchiOBHm_Chr2g0119771 RchiOBHm_Chr2g0119811 RchiOBHm_Chr6g0275141 RchiOBHm_Chr6g0275151 RchiOBHm_Chr6g0275161
rosa_laevigata RLG00000013491 RLG00000013494 RLG00000018485 RLG00000018486 RLG00000018489 RLG00000018492
rosa_multiflora Rmu_sc0001501.1_g000054 Rmu_sc0001501.1_g000061 Rmu_sc0001501.1_g000088 Rmu_sc0006012.1_g000002 Rmu_sc0020284.1_g000003 Rmu_sc0033232.1_g000001 Rmu_sc0033428.1_g000001 Rmu_ssc0000041.1_g000008 Rmu_ssc0000041.1_g000015
rosa_roxburghii Rroxscaffold_2G00081650 Rroxscaffold_2G00124090 Rroxscaffold_2G00124110 Rroxscaffold_7G00193590 Rroxscaffold_7G00193610
rosa_rugosa Rorug02G0223300 Rorug02G0223500 Rorug06G0088700 Rorug06G0088800 Rorug06G0088900 Rorug06G0089000 Rorug06G0089100
rosa_samantha Rh2AG280400 Rh2AG280700 Rh2AG280800 Rh2BG292200 Rh2BG292500 Rh2BG292800 Rh2DG287400 Rh2DG287600 Rh2DG306100 Rh2DG306500 Rh2DG306700 Rh6AG202700 Rh6AG202900 Rh6AG203100 Rh6BG205900 Rh6CG208000 Rh6CG208100 Rh6CG208300 Rh6DG198300 Rh6DG198400
rosa_wichuraiana Rw0G003770 Rw2G022460 Rw2G022490 Rw6G017600 Rw6G017610 Rw6G017620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
Acc16I TGCGCA 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 92
AclWI GGATC 2 cut(s) 77, 209
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 92
AgsI TTSAA 3 cut(s) 130, 305, 580
AjnI CCWGG 1 cut(s) 562
AjuI GAANNNNNNNTTGG 2 cut(s) 316, 348
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 3 cut(s) 45, 133, 377
AluI AGCT 3 cut(s) 45, 133, 377
Alw26I GTCTC 2 cut(s) 402, 561
AlwI GGATC 2 cut(s) 77, 209
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 3 cut(s) 74, 133, 596
ApoI RAATTY 1 cut(s) 4
ArsI GACNNNNNNTTYG 4 cut(s) 171, 203, 495, 527
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 3 cut(s) 74, 230, 264
AspS9I GGNCC 1 cut(s) 560
AsuHPI GGTGA 2 cut(s) 91, 559
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 560
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 3 cut(s) 61, 120, 608
BccI CCATC 2 cut(s) 86, 176
BciT130I CCWGG 1 cut(s) 564
BcoDI GTCTC 2 cut(s) 402, 561
BfaI CTAG 1 cut(s) 612
BfmI CTRYAG 2 cut(s) 223, 430
BglII AGATCT 1 cut(s) 418
BisI GCNGC 3 cut(s) 75, 134, 597
BlsI GCNGC 3 cut(s) 76, 135, 598
Bme1390I CCNGG 1 cut(s) 564
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 1 cut(s) 651
BpiI GAAGAC 1 cut(s) 126
Bpu14I TTCGAA 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 453
BsaI GGTCTC 1 cut(s) 561
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse8I GATNNNNATC 1 cut(s) 453
BseBI CCWGG 1 cut(s) 564
BseGI GGATG 1 cut(s) 402
BseJI GATNNNNATC 1 cut(s) 453
BseLI CCNNNNNNNGG 1 cut(s) 92
BseMII CTCAG 3 cut(s) 32, 267, 436
BseXI GCAGC 3 cut(s) 61, 120, 608
BsgI GTGCAG 1 cut(s) 371
BshFI GGCC 1 cut(s) 60
BslFI GGGAC 2 cut(s) 285, 573
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 2 cut(s) 402, 561
BsmBI CGTCTC 1 cut(s) 402
BsmFI GGGAC 2 cut(s) 285, 573
BsnI GGCC 1 cut(s) 60
Bso31I GGTCTC 1 cut(s) 561
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 6 cut(s) 82, 163, 201, 418, 454, 553
BspANI GGCC 1 cut(s) 60
BspCNI CTCAG 3 cut(s) 33, 266, 435
BspLI GGNNCC 1 cut(s) 561
BspPI GGATC 2 cut(s) 77, 209
BspT104I TTCGAA 1 cut(s) 54
BspTNI GGTCTC 1 cut(s) 561
BssMI GATC 6 cut(s) 82, 163, 201, 418, 454, 553
Bst2UI CCWGG 1 cut(s) 564
Bst4CI ACNGT 2 cut(s) 413, 530
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 5 cut(s) 41, 253, 392, 422, 442
BstF5I GGATG 1 cut(s) 402
BstHHI GCGC 3 cut(s) 74, 230, 264
BstKTI GATC 6 cut(s) 85, 166, 204, 421, 457, 556
BstMAI GTCTC 2 cut(s) 402, 561
BstMBI GATC 6 cut(s) 82, 163, 201, 418, 454, 553
BstMWI GCNNNNNNNGC 2 cut(s) 139, 234
BstNI CCWGG 1 cut(s) 564
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 2 cut(s) 223, 430
BstV1I GCAGC 3 cut(s) 61, 120, 608
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 2 cut(s) 201, 418
BstYI RGATCY 2 cut(s) 201, 418
BsuRI GGCC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 402
CfoI GCGC 3 cut(s) 74, 230, 264
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 330
CviAII CATG 3 cut(s) 275, 359, 622
CviJI RGCY 8 cut(s) 45, 60, 133, 142, 220, 237, 309, 377
CviKI_1 RGCY 8 cut(s) 45, 60, 133, 142, 220, 237, 309, 377
CviQI GTAC 1 cut(s) 330
DdeI CTNAG 5 cut(s) 41, 253, 392, 422, 442
DpnI GATC 6 cut(s) 84, 165, 203, 420, 456, 555
DpnII GATC 6 cut(s) 82, 163, 201, 418, 454, 553
Eco147I AGGCCT 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 562
EcoT22I ATGCAT 1 cut(s) 316
Esp3I CGTCTC 1 cut(s) 402
FaeI CATG 3 cut(s) 278, 362, 625
FalI AAGNNNNNCTT 2 cut(s) 316, 348
FaqI GGGAC 2 cut(s) 285, 573
FatI CATG 3 cut(s) 274, 358, 621
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 75, 134, 597
FokI GGATG 1 cut(s) 409
Fsp4HI GCNGC 3 cut(s) 75, 134, 597
FspBI CTAG 1 cut(s) 612
FspI TGCGCA 1 cut(s) 263
GlaI GCGC 3 cut(s) 73, 229, 263
GluI GCNGC 3 cut(s) 75, 134, 597
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 3 cut(s) 74, 230, 264
Hin1II CATG 3 cut(s) 278, 362, 625
Hin6I GCGC 3 cut(s) 72, 228, 262
HinP1I GCGC 3 cut(s) 72, 228, 262
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HinfI GANTC 5 cut(s) 186, 195, 291, 355, 626
HphI GGTGA 2 cut(s) 91, 559
Hpy166II GTNNAC 2 cut(s) 99, 499
Hpy188I TCNGA 5 cut(s) 42, 191, 256, 425, 476
Hpy188III TCNNGA 3 cut(s) 199, 270, 288
Hpy8I GTNNAC 2 cut(s) 99, 499
HpyAV CCTTC 6 cut(s) 47, 50, 299, 398, 502, 631
HpyCH4III ACNGT 2 cut(s) 413, 530
HpyCH4V TGCA 5 cut(s) 136, 314, 352, 365, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 139, 234
HpyF3I CTNAG 5 cut(s) 41, 253, 392, 422, 442
Hsp92II CATG 3 cut(s) 278, 362, 625
HspAI GCGC 3 cut(s) 72, 228, 262
Kzo9I GATC 6 cut(s) 82, 163, 201, 418, 454, 553
LmnI GCTCC 2 cut(s) 39, 374
LpnPI CCDG 7 cut(s) 184, 273, 280, 321, 542, 549, 576
Lsp1109I GCAGC 3 cut(s) 61, 120, 608
LweI GCATC 1 cut(s) 651
MaeI CTAG 1 cut(s) 612
MaeIII GTNAC 3 cut(s) 173, 340, 614
MalI GATC 6 cut(s) 84, 165, 203, 420, 456, 555
MboI GATC 6 cut(s) 82, 163, 201, 418, 454, 553
MboII GAAGA 3 cut(s) 43, 131, 204
MflI RGATCY 2 cut(s) 201, 418
MluCI AATT 3 cut(s) 4, 299, 607
MlyI GAGTC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 4 cut(s) 71, 165, 364, 581
Mph1103I ATGCAT 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 113, 534, 606
MslI CAYNNNNRTG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 564
MvaI CCWGG 1 cut(s) 564
MwoI GCNNNNNNNGC 2 cut(s) 139, 234
NdeI CATATG 1 cut(s) 316
NdeII GATC 6 cut(s) 82, 163, 201, 418, 454, 553
NlaIII CATG 3 cut(s) 278, 362, 625
NlaIV GGNNCC 1 cut(s) 561
NsbI TGCGCA 1 cut(s) 263
NsiI ATGCAT 1 cut(s) 316
NspV TTCGAA 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 104
PceI AGGCCT 1 cut(s) 60
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 195, 291, 355, 626
PflMI CCANNNNNTGG 1 cut(s) 92
PkrI GCNGC 3 cut(s) 76, 135, 598
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
PsiI TTATAA 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 562
PspGI CCWGG 1 cut(s) 562
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 1 cut(s) 560
PsuI RGATCY 2 cut(s) 201, 418
RsaI GTAC 1 cut(s) 331
RsaNI GTAC 1 cut(s) 330
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 3 cut(s) 113, 534, 606
SatI GCNGC 3 cut(s) 75, 134, 597
Sau3AI GATC 6 cut(s) 82, 163, 201, 418, 454, 553
Sau96I GGNCC 1 cut(s) 560
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 564
SetI ASST 7 cut(s) 47, 135, 157, 379, 513, 573, 635
SfaNI GCATC 1 cut(s) 651
SfcI CTRYAG 2 cut(s) 223, 430
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 560
SmiMI CAYNNNNRTG 1 cut(s) 104
Sse9I AATT 3 cut(s) 4, 299, 607
SseBI AGGCCT 1 cut(s) 60
SspMI CTAG 1 cut(s) 612
StuI AGGCCT 1 cut(s) 60
StyD4I CCNGG 1 cut(s) 562
TaaI ACNGT 2 cut(s) 413, 530
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 4, 299, 607
TfiI GAWTC 4 cut(s) 195, 291, 355, 626
Tru1I TTAA 3 cut(s) 113, 534, 606
Tru9I TTAA 3 cut(s) 113, 534, 606
TseI GCWGC 3 cut(s) 74, 133, 596
TspDTI ATGAA 5 cut(s) 17, 165, 347, 417, 511
Van91I CCANNNNNTGG 1 cut(s) 92
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 1 cut(s) 4
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 612
Zsp2I ATGCAT 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.