FvH4_2g02610

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000592
Physical Location & Seq
Reverse (-)
2081368 .. 2083152
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02610.t1

Sequence Viewer

Length: 1365 bp
ATGAGCCACAAAGTTGCTGCAAATGTTGCAGTCTTAGCTTTTCCATTCACCTCCCATCCCTTCTCTCTTCTCCGATTTGTACGTTCCATTTCAACTCTGGCCCCCGACATGCAGTTCACCTTCTTCAACACACCTAGGTCAAACAGCTCCCTGTTCTCGGGTTCCGGCAACATGAGCTATGACAATATAAAGCCTTACAACGTATGGGATGGCATGCGAGATGGCTACACACCCCCCTCATCCGGATATCCTCCGCTGCAGCAAGTCGAGTCGTTCCGTGACACTGTACCTGGTAACTTCGAGAAGGCAATCAAAGAGGTGGAGGCTGCAACAGGACGCAAGTTCGACCTGTTGATTTCAGATGCAATTCTCTGCTGGTTTGCAAGTGACCTAGCCGAAAAAATGCAAGTCACTTGGGTGCCCTTTTGGATTTCTACTCAACGCTCGCTGCTTGCTTTTGTTGAGATTGATATGATAAAAGAGAAAATAGGAGCCCAAGGACAAGAAGACACAACTCTGGACTTTCTTCCAGGATTTTCAAATGAATTCCGAGCATCTGACCTACCGAGAGAAATTCCATTAGGAGACATAAAACCGCCTCTTGCAAGAATGTTTCATATAATGGGGCAGAAGCTGCCACAAGCAACTGTGGTTGCCATCAACTCTTTTGAAACGATGGACTTGAAAGTTACCGAGGAACTGAAGAAAAGACTCCGGAAGTTGGTCCTTGTTGGGCCACAACATCTCGTCGTCAAGCCATTACAGTCATCAGATGATGATGGCTGCTTACAGTGGTTGGACAAGCAGGAACCTGCTTCGGTAGCATACATCAGCTTTGGAACTGCAGGGGCACTGGCTCCCATGGAGGTAGCAGCATTAGCTGAGGCATTAGAGGAACGTAGATTCCCCTTTCTTTGGTCATTTAGGGGAAATCAAGAGGAATTTCCACAAGGATTTATCGAGAGAACAAAGAGGTTGTCCCTTGGAAAAGTAGTTCCATGGGTGAACCAAGAGAAAATCCTCAATCATACCTCGGTAGGAGTGTTTGTAACACATTGCGGTTGGAGCTCAATTTTGGAGAGTATAACTGGTGGTGTGCCTATGATTGGGAAACCTTCCTTTGCTGATCAAAATATGTGCATGCGGAGCTTAGAAGTTGTATGGAGAATCGGTGTGAAGATTGAGGGTGGCGTTTTCACTAAAACTGGAGCAGTCAAGGCACTGGAACAAGCTTTATTGCTTGAGCAAGGAAAAGAAATGAGACAGAGAGTTGGAATCCTGAAACATCTTGCTCTAGAGGCTGTTGGACACAACGGGCGTTCAGCTCAAGACTTGCAAGCTTTGGTCGATATCATCAAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

455

Amino Acids

50.54

Weight (kDa)

6.48

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 272 - 413 2.4e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 418
AccIII TCCGGA 2 cut(s) 242, 714
AciI CCGC 4 cut(s) 254, 596, 1059, 1144
AcsI RAATTY 3 cut(s) 545, 573, 941
AcuI CTGAAG 1 cut(s) 722
AfaI GTAC 2 cut(s) 81, 288
AfiI CCNNNNNNNGG 5 cut(s) 157, 242, 721, 915, 1106
AgsI TTSAA 5 cut(s) 93, 127, 540, 671, 685
AjnI CCWGG 2 cut(s) 289, 529
AleI CACNNNNGTG 1 cut(s) 416
AloI GAACNNNNNNTCC 4 cut(s) 888, 920, 978, 1010
Alw21I GWGCWC 1 cut(s) 1070
Alw26I GTCTC 2 cut(s) 579, 1255
AlwNI CAGNNNCTG 1 cut(s) 634
Ama87I CYCGRG 1 cut(s) 157
Aor13HI TCCGGA 2 cut(s) 242, 714
AoxI GGCC 2 cut(s) 99, 734
ApeKI GCWGC 8 cut(s) 17, 256, 259, 326, 448, 634, 783, 872
ApoI RAATTY 3 cut(s) 545, 573, 941
ArsI GACNNNNNNTTYG 2 cut(s) 962, 994
AspA2I CCTAGG 1 cut(s) 134
AspS9I GGNCC 3 cut(s) 100, 724, 734
AsuHPI GGTGA 3 cut(s) 40, 109, 1015
AvaI CYCGRG 1 cut(s) 157
AvaII GGWCC 1 cut(s) 724
AvrII CCTAGG 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 423, 853
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 496, 1070
BbsI GAAGAC 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 1070
BbvCI CCTCAGC 1 cut(s) 882
BbvI GCAGC 8 cut(s) 4, 243, 271, 313, 435, 621, 770, 884
BccI CCATC 6 cut(s) 63, 203, 215, 665, 670, 773
BciT130I CCWGG 2 cut(s) 291, 531
BclI TGATCA 1 cut(s) 1126
BcoDI GTCTC 2 cut(s) 579, 1255
BfaI CTAG 3 cut(s) 135, 392, 1295
BfmI CTRYAG 2 cut(s) 257, 843
BfuAI ACCTGC 1 cut(s) 820
BisI GCNGC 8 cut(s) 18, 257, 260, 327, 449, 635, 784, 873
BlnI CCTAGG 1 cut(s) 134
BlsI GCNGC 8 cut(s) 19, 258, 261, 328, 450, 636, 785, 874
Bme1390I CCNGG 2 cut(s) 291, 531
Bme18I GGWCC 1 cut(s) 724
BmeT110I CYCGRG 1 cut(s) 157
BmgT120I GGNCC 3 cut(s) 100, 724, 734
BmiI GGNNCC 6 cut(s) 102, 163, 420, 493, 810, 858
BmrFI CCNGG 2 cut(s) 291, 531
BmsI GCATC 2 cut(s) 352, 563
BpiI GAAGAC 1 cut(s) 513
BpmI CTGGAG 1 cut(s) 1227
Bpu10I CCTNAGC 1 cut(s) 882
BpuEI CTTGAG 2 cut(s) 1262, 1311
BsaJI CCNNGG 7 cut(s) 134, 496, 693, 861, 982, 998, 1032
BsaWI WCCGGW 2 cut(s) 242, 714
BsaXI ACNNNNNCTCC 4 cut(s) 1032, 1062, 1156, 1186
Bsc4I CCNNNNNNNGG 5 cut(s) 157, 242, 721, 915, 1106
Bse1I ACTGG 4 cut(s) 858, 1093, 1210, 1227
Bse3DI GCAATG 1 cut(s) 1054
BseAI TCCGGA 2 cut(s) 242, 714
BseBI CCWGG 2 cut(s) 291, 531
BseDI CCNNGG 7 cut(s) 134, 496, 693, 861, 982, 998, 1032
BseGI GGATG 3 cut(s) 55, 214, 239
BseLI CCNNNNNNNGG 5 cut(s) 157, 242, 721, 915, 1106
BseMI GCAATG 1 cut(s) 1054
BseMII CTCAG 1 cut(s) 873
BseNI ACTGG 4 cut(s) 858, 1093, 1210, 1227
BseSI GKGCMC 2 cut(s) 423, 853
BseXI GCAGC 8 cut(s) 4, 243, 271, 313, 435, 621, 770, 884
BshFI GGCC 2 cut(s) 101, 736
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 1070
BsiHKCI CYCGRG 1 cut(s) 157
BsiSI CCGG 3 cut(s) 165, 243, 715
BslFI GGGAC 1 cut(s) 964
BslI CCNNNNNNNGG 5 cut(s) 157, 242, 721, 915, 1106
BsmAI GTCTC 2 cut(s) 579, 1255
BsmFI GGGAC 1 cut(s) 964
BsnI GGCC 2 cut(s) 101, 736
BsoBI CYCGRG 1 cut(s) 157
Bsp1286I GDGCHC 4 cut(s) 423, 496, 853, 1070
Bsp13I TCCGGA 2 cut(s) 242, 714
Bsp143I GATC 1 cut(s) 1126
Bsp19I CCATGG 2 cut(s) 861, 998
BspACI CCGC 4 cut(s) 254, 596, 1059, 1144
BspANI GGCC 2 cut(s) 101, 736
BspCNI CTCAG 1 cut(s) 874
BspEI TCCGGA 2 cut(s) 242, 714
BspLI GGNNCC 6 cut(s) 102, 163, 420, 493, 810, 858
BspMAI CTGCAG 2 cut(s) 261, 847
BspMI ACCTGC 1 cut(s) 820
BspT107I GGYRCC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 1054
BsrI ACTGG 4 cut(s) 858, 1093, 1210, 1227
BssECI CCNNGG 7 cut(s) 134, 496, 693, 861, 982, 998, 1032
BssMI GATC 1 cut(s) 1126
BssT1I CCWWGG 5 cut(s) 134, 496, 861, 982, 998
Bst2UI CCWGG 2 cut(s) 291, 531
Bst4CI ACNGT 4 cut(s) 286, 649, 765, 792
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 2 cut(s) 26, 634
BstC8I GCNNGC 5 cut(s) 215, 446, 453, 1142, 1338
BstDEI CTNAG 3 cut(s) 34, 882, 1150
BstDSI CCRYGG 2 cut(s) 861, 998
BstF5I GGATG 3 cut(s) 55, 214, 239
BstKTI GATC 1 cut(s) 1129
BstMAI GTCTC 2 cut(s) 579, 1255
BstMBI GATC 1 cut(s) 1126
BstNI CCWGG 2 cut(s) 291, 531
BstNSI RCATGY 3 cut(s) 112, 217, 1144
BstSCI CCNGG 2 cut(s) 289, 529
BstSFI CTRYAG 2 cut(s) 257, 843
BstSLI GKGCMC 2 cut(s) 423, 853
BstV1I GCAGC 8 cut(s) 4, 243, 271, 313, 435, 621, 770, 884
BstV2I GAAGAC 1 cut(s) 513
BsuRI GGCC 2 cut(s) 101, 736
BtgI CCRYGG 2 cut(s) 861, 998
BtsCI GGATG 3 cut(s) 55, 214, 239
BtsIMutI CAGTG 4 cut(s) 282, 797, 851, 1220
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 5 cut(s) 215, 446, 453, 1142, 1338
CaiI CAGNNNCTG 1 cut(s) 634
Cfr13I GGNCC 3 cut(s) 100, 724, 734
CseI GACGC 1 cut(s) 345
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 2 cut(s) 80, 287
CviAII CATG 6 cut(s) 109, 172, 214, 862, 999, 1141
CviQI GTAC 2 cut(s) 80, 287
DdeI CTNAG 3 cut(s) 34, 882, 1150
DpnI GATC 1 cut(s) 1128
DpnII GATC 1 cut(s) 1126
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 1068
Eco130I CCWWGG 5 cut(s) 134, 496, 861, 982, 998
Eco24I GRGCYC 2 cut(s) 496, 1070
Eco32I GATATC 2 cut(s) 248, 1351
Eco47I GGWCC 1 cut(s) 724
Eco53kI GAGCTC 1 cut(s) 1068
Eco57I CTGAAG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 1068
EcoRI GAATTC 1 cut(s) 545
EcoRII CCWGG 2 cut(s) 289, 529
EcoRV GATATC 2 cut(s) 248, 1351
EcoT14I CCWWGG 5 cut(s) 134, 496, 861, 982, 998
EcoT38I GRGCYC 2 cut(s) 496, 1070
ErhI CCWWGG 5 cut(s) 134, 496, 861, 982, 998
FaeI CATG 6 cut(s) 112, 175, 217, 865, 1002, 1144
FaqI GGGAC 1 cut(s) 964
FatI CATG 6 cut(s) 108, 171, 213, 861, 998, 1140
FbaI TGATCA 1 cut(s) 1126
Fnu4HI GCNGC 8 cut(s) 18, 257, 260, 327, 449, 635, 784, 873
FokI GGATG 3 cut(s) 42, 221, 226
FriOI GRGCYC 2 cut(s) 496, 1070
Fsp4HI GCNGC 8 cut(s) 18, 257, 260, 327, 449, 635, 784, 873
FspBI CTAG 3 cut(s) 135, 392, 1295
GluI GCNGC 8 cut(s) 18, 257, 260, 327, 449, 635, 784, 873
GsuI CTGGAG 1 cut(s) 1227
HaeIII GGCC 2 cut(s) 101, 736
HapII CCGG 3 cut(s) 165, 243, 715
HgaI GACGC 1 cut(s) 345
Hin1II CATG 6 cut(s) 112, 175, 217, 865, 1002, 1144
HindIII AAGCTT 2 cut(s) 1230, 1338
HinfI GANTC 5 cut(s) 269, 711, 903, 1167, 1275
HpaII CCGG 3 cut(s) 165, 243, 715
HphI GGTGA 3 cut(s) 40, 109, 1015
Hpy166II GTNNAC 2 cut(s) 117, 1006
Hpy188I TCNGA 5 cut(s) 74, 361, 551, 559, 772
Hpy8I GTNNAC 2 cut(s) 117, 1006
Hpy99I CGWCG 1 cut(s) 752
HpyAV CCTTC 4 cut(s) 70, 130, 298, 1125
HpyCH4III ACNGT 4 cut(s) 286, 649, 765, 792
HpyCH4IV ACGT 3 cut(s) 82, 201, 898
HpyF3I CTNAG 3 cut(s) 34, 882, 1150
HpySE526I ACGT 3 cut(s) 82, 201, 898
Hsp92II CATG 6 cut(s) 112, 175, 217, 865, 1002, 1144
Kpn2I TCCGGA 2 cut(s) 242, 714
Ksp22I TGATCA 1 cut(s) 1126
Kzo9I GATC 1 cut(s) 1126
LmnI GCTCC 6 cut(s) 152, 491, 862, 1065, 1146, 1208
Lsp1109I GCAGC 8 cut(s) 4, 243, 271, 313, 435, 621, 770, 884
LweI GCATC 2 cut(s) 352, 563
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 3 cut(s) 135, 392, 1295
MaeII ACGT 3 cut(s) 82, 201, 898
MaeIII GTNAC 6 cut(s) 278, 293, 386, 409, 688, 1048
MalI GATC 1 cut(s) 1128
MboI GATC 1 cut(s) 1126
MboII GAAGA 6 cut(s) 59, 115, 518, 518, 715, 1189
MhlI GDGCHC 4 cut(s) 423, 496, 853, 1070
MluCI AATT 5 cut(s) 366, 545, 573, 941, 1071
MlyI GAGTC 2 cut(s) 278, 705
MmeI TCCRAC 4 cut(s) 777, 1043, 1252, 1285
MroI TCCGGA 2 cut(s) 242, 714
MslI CAYNNNNRTG 1 cut(s) 416
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 3 cut(s) 165, 243, 715
MspR9I CCNGG 2 cut(s) 291, 531
MvaI CCWGG 2 cut(s) 291, 531
NcoI CCATGG 2 cut(s) 861, 998
NdeII GATC 1 cut(s) 1126
NlaIII CATG 6 cut(s) 112, 175, 217, 865, 1002, 1144
NlaIV GGNNCC 6 cut(s) 102, 163, 420, 493, 810, 858
NmuCI GTSAC 3 cut(s) 278, 386, 409
NspI RCATGY 3 cut(s) 112, 217, 1144
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 2 cut(s) 217, 1144
PfeI GAWTC 3 cut(s) 903, 1167, 1275
PfoI TCCNGGA 1 cut(s) 529
PkrI GCNGC 8 cut(s) 19, 258, 261, 328, 450, 636, 785, 874
PleI GAGTC 2 cut(s) 277, 705
PpsI GAGTC 2 cut(s) 277, 705
Psp124BI GAGCTC 1 cut(s) 1070
Psp6I CCWGG 2 cut(s) 289, 529
PspGI CCWGG 2 cut(s) 289, 529
PspN4I GGNNCC 6 cut(s) 102, 163, 420, 493, 810, 858
PspPI GGNCC 3 cut(s) 100, 724, 734
PstI CTGCAG 2 cut(s) 261, 847
PstNI CAGNNNCTG 1 cut(s) 634
RsaI GTAC 2 cut(s) 81, 288
RsaNI GTAC 2 cut(s) 80, 287
RseI CAYNNNNRTG 1 cut(s) 416
SacI GAGCTC 1 cut(s) 1070
SatI GCNGC 8 cut(s) 18, 257, 260, 327, 449, 635, 784, 873
Sau3AI GATC 1 cut(s) 1126
Sau96I GGNCC 3 cut(s) 100, 724, 734
SchI GAGTC 2 cut(s) 278, 705
ScrFI CCNGG 2 cut(s) 291, 531
SduI GDGCHC 4 cut(s) 423, 496, 853, 1070
SexAI ACCWGGT 1 cut(s) 289
SfaNI GCATC 2 cut(s) 352, 563
SfcI CTRYAG 2 cut(s) 257, 843
SinI GGWCC 1 cut(s) 724
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 1241, 1326
SmoI CTYRAG 2 cut(s) 1241, 1326
SphI GCATGC 2 cut(s) 217, 1144
Sse9I AATT 5 cut(s) 366, 545, 573, 941, 1071
SsiI CCGC 4 cut(s) 254, 596, 1059, 1144
SspMI CTAG 3 cut(s) 135, 392, 1295
SstI GAGCTC 1 cut(s) 1070
StyD4I CCNGG 2 cut(s) 289, 529
StyI CCWWGG 5 cut(s) 134, 496, 861, 982, 998
TaaI ACNGT 4 cut(s) 286, 649, 765, 792
TaiI ACGT 3 cut(s) 85, 204, 901
TaqI TCGA 5 cut(s) 267, 300, 345, 960, 1347
TasI AATT 5 cut(s) 366, 545, 573, 941, 1071
TfiI GAWTC 3 cut(s) 903, 1167, 1275
TscAI CASTG 4 cut(s) 289, 797, 858, 1227
TseFI GTSAC 3 cut(s) 278, 386, 409
TseI GCWGC 8 cut(s) 17, 256, 259, 326, 448, 634, 783, 872
Tsp45I GTSAC 3 cut(s) 278, 386, 409
TspDTI ATGAA 2 cut(s) 558, 605
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 4 cut(s) 289, 797, 858, 1227
VpaK11BI GGWCC 1 cut(s) 724
XapI RAATTY 3 cut(s) 545, 573, 941
XbaI TCTAGA 1 cut(s) 1294
XceI RCATGY 3 cut(s) 112, 217, 1144
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XmaJI CCTAGG 1 cut(s) 134
XspI CTAG 3 cut(s) 135, 392, 1295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.