Rh4DG043600

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
Physical Location & Seq
Reverse (-)
7110412 .. 7112634
2223 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG043600.1

Sequence Viewer

Length: 1200 bp
ATGAGCCACAAAGTTGCTAGTACTAGTCCTCGAAATGTTGCCGTCTTAGTTTTTCCATTCACCTCCCATCCCACCGCTCTTCTTCGATTTGTACGTTCCCTTTCAACTGTTGCCCCGCATATGCAGTTCACCTTCTTCAACATTTCTAGATCAAATAGCTCCCTCTTCTCAGGTTCCGGCAACAAGGGCTGTGATAATATAAAGCCTTACAACGTATGGGATGGCTTACCAGATGGCTACATACCTCTCTCCAGAAATCCACAACGGGAGCACGTTGAGTTGTTTATTGACAATGCACCTGGGATCTTCGAGAGGGCAATCAAAGAGGTGGAGGCTGAAACAGGACACAAGTTTGGCTGCTTGATTTCGGATGCATTATTCTGGTTTGCTGCAGACATAGCCGAGAAAATGCACGTCCCTTGGGTGACCTCATGGATTGGTGATATACGCTCACTTTTTGTTCATATCGAGACTGATATAATTAGAGATAAAGTGGGAGCTCCTAGACAAGAAAACAAAACCCTGGAGTTCCTTCCGGGATTCTCCGATGAGTTTCGAGCATCTGACTTACCCAAGGAGATTGTATTTGGAGAAATAGAATCGCCATTTGCAAGAATGTTGCATAAAATGGGACAGAAGCTGCCACAAGCAGCTGCGGTTGTCGTCAACTCTTTTGAAACAATGGACTTGAAAGTTACTGAGGAACTGAAGAAAAGACTCCAAAAGTTGATCCTTGTTGGTCCACTACATCTTGTCCGGCCACTACAATCAGTAGTATCAGATGATGAGGATCAGGAGCAGGAGGAGGATGTATGCTTACAATGGCTGGACGACCACGAGCCTGCGTCGGTAGCATACATCAGCTTTGGAAGTCTGGGGGCACTACCCCCCATGGAGGTATCAGCATTAGCTGAAGCTTTAGAGGAAGGTGGATTCCCCTTTCTTTGGCCTGGTTTTGCTGATCAACACATAAATATGCGGAGCGTAGAAGTGGTATGGAAAATTGGTGTGAGAATTGAGGGAGGCGTTTTCACTAAAACTGGAGCAGTCAAGGCACTGGAACAAGTCTTATCGCTTGAACAAGGAAAAGAGATGAGACAGAGAATTGGAGTCCTTAAACAGCTTGCTCAAGAGGCTGTAGGACCCAATGGGAGGTCAGCTCAAAACTTGAAAGCTTTGGTAGAGATCATCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

399

Amino Acids

44.43

Weight (kDa)

5.55

Isoelectric Point (pI)

53.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 77
AciI CCGC 4 cut(s) 75, 116, 656, 979
AclWI GGATC 3 cut(s) 311, 724, 798
AcoI YGGCCR 1 cut(s) 758
AcuI CTGAAG 2 cut(s) 728, 933
AfaI GTAC 2 cut(s) 22, 93
AfiI CCNNNNNNNGG 3 cut(s) 895, 945, 1152
AgsI TTSAA 6 cut(s) 105, 139, 677, 691, 1079, 1171
AhlI ACTAGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 3 cut(s) 298, 522, 949
Alw21I GWGCWC 2 cut(s) 273, 502
Alw26I GTCTC 2 cut(s) 464, 1090
AlwI GGATC 3 cut(s) 311, 724, 798
AlwNI CAGNNNCTG 1 cut(s) 640
AoxI GGCC 2 cut(s) 758, 947
ApeKI GCWGC 5 cut(s) 357, 389, 640, 650, 653
AspS9I GGNCC 2 cut(s) 740, 1142
AsuC2I CCSGG 1 cut(s) 537
AsuHPI GGTGA 4 cut(s) 52, 121, 436, 452
AvaII GGWCC 2 cut(s) 740, 1142
BaeGI GKGCMC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 502
BauI CACGAG 1 cut(s) 836
Bbv12I GWGCWC 2 cut(s) 273, 502
BbvI GCAGC 5 cut(s) 344, 376, 627, 640, 662
BccI CCATC 3 cut(s) 75, 215, 227
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 3 cut(s) 300, 524, 951
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 1 cut(s) 537
BcoDI GTCTC 2 cut(s) 464, 1090
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 4 cut(s) 18, 24, 147, 504
BfmI CTRYAG 2 cut(s) 390, 1137
BisI GCNGC 5 cut(s) 358, 390, 641, 651, 654
BlsI GCNGC 5 cut(s) 359, 391, 642, 652, 655
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 4 cut(s) 300, 524, 537, 951
Bme18I GGWCC 2 cut(s) 740, 1142
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 740, 1142
BmiI GGNNCC 2 cut(s) 175, 1144
BmrFI CCNGG 4 cut(s) 300, 524, 537, 951
BmsI GCATC 2 cut(s) 361, 569
BplI GAGNNNNNCTC 2 cut(s) 1144, 1176
BpmI CTGGAG 3 cut(s) 235, 545, 1062
BpuEI CTTGAG 1 cut(s) 1113
BpuMI CCSGG 1 cut(s) 537
BsaBI GATNNNNATC 1 cut(s) 789
BsaJI CCNNGG 5 cut(s) 299, 419, 522, 573, 891
Bsc4I CCNNNNNNNGG 3 cut(s) 895, 945, 1152
Bse1I ACTGG 2 cut(s) 1045, 1062
Bse8I GATNNNNATC 1 cut(s) 789
BseBI CCWGG 3 cut(s) 300, 524, 951
BseDI CCNNGG 5 cut(s) 299, 419, 522, 573, 891
BseGI GGATG 4 cut(s) 67, 226, 376, 814
BseJI GATNNNNATC 1 cut(s) 789
BseLI CCNNNNNNNGG 3 cut(s) 895, 945, 1152
BseMII CTCAG 2 cut(s) 183, 690
BseNI ACTGG 2 cut(s) 1045, 1062
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 883
BseXI GCAGC 5 cut(s) 344, 376, 627, 640, 662
BshFI GGCC 2 cut(s) 760, 949
BsiHKAI GWGCWC 2 cut(s) 273, 502
BsiSI CCGG 3 cut(s) 177, 536, 757
BslFI GGGAC 2 cut(s) 401, 645
BslI CCNNNNNNNGG 3 cut(s) 895, 945, 1152
BsmAI GTCTC 2 cut(s) 464, 1090
BsmFI GGGAC 2 cut(s) 401, 645
BsnI GGCC 2 cut(s) 760, 949
Bsp1286I GDGCHC 3 cut(s) 273, 502, 883
Bsp143I GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 4 cut(s) 75, 116, 656, 979
BspANI GGCC 2 cut(s) 760, 949
BspCNI CTCAG 2 cut(s) 182, 691
BspLI GGNNCC 2 cut(s) 175, 1144
BspMAI CTGCAG 1 cut(s) 394
BspPI GGATC 3 cut(s) 311, 724, 798
BspQI GCTCTTC 1 cut(s) 84
BsrBI CCGCTC 1 cut(s) 77
BsrI ACTGG 2 cut(s) 1045, 1062
BssECI CCNNGG 5 cut(s) 299, 419, 522, 573, 891
BssMI GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
BssSI CACGAG 1 cut(s) 836
BssT1I CCWWGG 3 cut(s) 419, 573, 891
Bst2BI CACGAG 1 cut(s) 836
Bst2UI CCWGG 3 cut(s) 300, 524, 951
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 84, 170
BstC8I GCNNGC 2 cut(s) 843, 1125
BstDEI CTNAG 3 cut(s) 46, 169, 699
BstDSI CCRYGG 1 cut(s) 891
BstEII GGTNACC 1 cut(s) 424
BstF5I GGATG 4 cut(s) 67, 226, 376, 814
BstKTI GATC 6 cut(s) 152, 306, 732, 793, 964, 1188
BstMAI GTCTC 2 cut(s) 464, 1090
BstMBI GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
BstMWI GCNNNNNNNGC 5 cut(s) 186, 398, 851, 1052, 1133
BstNI CCWGG 3 cut(s) 300, 524, 951
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 4 cut(s) 298, 522, 535, 949
BstSFI CTRYAG 2 cut(s) 390, 1137
BstSLI GKGCMC 1 cut(s) 883
BstV1I GCAGC 5 cut(s) 344, 376, 627, 640, 662
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BsuRI GGCC 2 cut(s) 760, 949
BtgI CCRYGG 1 cut(s) 891
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 4 cut(s) 67, 226, 376, 814
BtsIMutI CAGTG 1 cut(s) 1055
Cac8I GCNNGC 2 cut(s) 843, 1125
CaiI CAGNNNCTG 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 740, 1142
CseI GACGC 1 cut(s) 834
Csp6I GTAC 2 cut(s) 21, 92
CviAII CATG 2 cut(s) 432, 892
CviQI GTAC 2 cut(s) 21, 92
DdeI CTNAG 3 cut(s) 46, 169, 699
DpnI GATC 6 cut(s) 151, 305, 731, 792, 963, 1187
DpnII GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
EaeI YGGCCR 1 cut(s) 758
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
Ecl136II GAGCTC 1 cut(s) 500
Eco130I CCWWGG 3 cut(s) 419, 573, 891
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 740, 1142
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 728, 933
Eco91I GGTNACC 1 cut(s) 424
EcoICRI GAGCTC 1 cut(s) 500
EcoO109I RGGNCCY 1 cut(s) 1142
EcoO65I GGTNACC 1 cut(s) 424
EcoRII CCWGG 3 cut(s) 298, 522, 949
EcoT14I CCWWGG 3 cut(s) 419, 573, 891
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 419, 573, 891
FaeI CATG 2 cut(s) 435, 895
FaqI GGGAC 2 cut(s) 401, 645
FatI CATG 2 cut(s) 431, 891
FauI CCCGC 1 cut(s) 123
FauNDI CATATG 1 cut(s) 120
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 5 cut(s) 358, 390, 641, 651, 654
FokI GGATG 4 cut(s) 54, 233, 383, 821
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 5 cut(s) 358, 390, 641, 651, 654
FspBI CTAG 4 cut(s) 18, 24, 147, 504
GluI GCNGC 5 cut(s) 358, 390, 641, 651, 654
GsuI CTGGAG 3 cut(s) 235, 545, 1062
HaeIII GGCC 2 cut(s) 760, 949
HapII CCGG 3 cut(s) 177, 536, 757
HgaI GACGC 1 cut(s) 834
Hin1II CATG 2 cut(s) 435, 895
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 3 cut(s) 915, 1173, 1194
HinfI GANTC 5 cut(s) 540, 599, 717, 933, 1110
HpaII CCGG 3 cut(s) 177, 536, 757
HphI GGTGA 4 cut(s) 52, 121, 436, 452
Hpy166II GTNNAC 3 cut(s) 129, 667, 743
Hpy188I TCNGA 4 cut(s) 370, 547, 565, 781
Hpy188III TCNNGA 6 cut(s) 147, 252, 310, 469, 794, 1130
Hpy8I GTNNAC 3 cut(s) 129, 667, 743
Hpy99I CGWCG 1 cut(s) 850
HpyAV CCTTC 3 cut(s) 142, 542, 920
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 4 cut(s) 94, 213, 273, 414
HpyCH4V TGCA 7 cut(s) 124, 296, 374, 392, 412, 611, 622
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 398, 851, 1052, 1133
HpyF3I CTNAG 3 cut(s) 46, 169, 699
HpySE526I ACGT 4 cut(s) 94, 213, 273, 414
Hsp92II CATG 2 cut(s) 435, 895
Ksp22I TGATCA 1 cut(s) 961
Kzo9I GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 7 cut(s) 164, 268, 497, 505, 796, 981, 1043
Lsp1109I GCAGC 5 cut(s) 344, 376, 627, 640, 662
LweI GCATC 2 cut(s) 361, 569
MaeI CTAG 4 cut(s) 18, 24, 147, 504
MaeII ACGT 4 cut(s) 94, 213, 273, 414
MaeIII GTNAC 2 cut(s) 424, 694
MalI GATC 6 cut(s) 151, 305, 731, 792, 963, 1187
MbiI CCGCTC 1 cut(s) 77
MboI GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
MboII GAAGA 6 cut(s) 71, 74, 127, 157, 298, 721
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 3 cut(s) 273, 502, 883
MluCI AATT 4 cut(s) 480, 1002, 1014, 1104
MlyI GAGTC 2 cut(s) 711, 1119
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 1 cut(s) 1116
MslI CAYNNNNRTG 1 cut(s) 974
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 3 cut(s) 177, 536, 757
MspR9I CCNGG 4 cut(s) 300, 524, 537, 951
MvaI CCWGG 3 cut(s) 300, 524, 951
MwoI GCNNNNNNNGC 5 cut(s) 186, 398, 851, 1052, 1133
NciI CCSGG 1 cut(s) 537
NcoI CCATGG 1 cut(s) 891
NdeI CATATG 1 cut(s) 120
NdeII GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
NlaIII CATG 2 cut(s) 435, 895
NlaIV GGNNCC 2 cut(s) 175, 1144
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 3 cut(s) 540, 599, 933
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 5 cut(s) 359, 391, 642, 652, 655
PleI GAGTC 2 cut(s) 711, 1118
PpsI GAGTC 2 cut(s) 711, 1118
PpuMI RGGWCCY 1 cut(s) 1142
Psp124BI GAGCTC 1 cut(s) 502
Psp5II RGGWCCY 1 cut(s) 1142
Psp6I CCWGG 3 cut(s) 298, 522, 949
PspEI GGTNACC 1 cut(s) 424
PspGI CCWGG 3 cut(s) 298, 522, 949
PspN4I GGNNCC 2 cut(s) 175, 1144
PspPI GGNCC 2 cut(s) 740, 1142
PspPPI RGGWCCY 1 cut(s) 1142
PstI CTGCAG 1 cut(s) 394
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 22, 93
RsaNI GTAC 2 cut(s) 21, 92
RseI CAYNNNNRTG 1 cut(s) 974
SacI GAGCTC 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 1116
SatI GCNGC 5 cut(s) 358, 390, 641, 651, 654
Sau3AI GATC 6 cut(s) 149, 303, 729, 790, 961, 1185
Sau96I GGNCC 2 cut(s) 740, 1142
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 2 cut(s) 711, 1119
ScrFI CCNGG 4 cut(s) 300, 524, 537, 951
SduI GDGCHC 3 cut(s) 273, 502, 883
SfaNI GCATC 2 cut(s) 361, 569
SfcI CTRYAG 2 cut(s) 390, 1137
SinI GGWCC 2 cut(s) 740, 1142
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 1128
SmoI CTYRAG 1 cut(s) 1128
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 4 cut(s) 480, 1002, 1014, 1104
SsiI CCGC 4 cut(s) 75, 116, 656, 979
SspMI CTAG 4 cut(s) 18, 24, 147, 504
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 4 cut(s) 298, 522, 535, 949
StyI CCWWGG 3 cut(s) 419, 573, 891
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 4 cut(s) 97, 216, 276, 417
TaqI TCGA 5 cut(s) 31, 85, 309, 468, 556
TasI AATT 4 cut(s) 480, 1002, 1014, 1104
TatI WGTACW 1 cut(s) 20
TfiI GAWTC 3 cut(s) 540, 599, 933
Tru1I TTAA 1 cut(s) 1116
Tru9I TTAA 1 cut(s) 1116
TscAI CASTG 1 cut(s) 1062
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 5 cut(s) 357, 389, 640, 650, 653
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 1 cut(s) 452
TspRI CASTG 1 cut(s) 1062
VpaK11BI GGWCC 2 cut(s) 740, 1142
XbaI TCTAGA 1 cut(s) 146
XspI CTAG 4 cut(s) 18, 24, 147, 504
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.