Rmu_co8424409.1_g000001

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8424409.1
OG0000592
Physical Location & Seq
Forward (+)
114 .. 806
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8424409.1_g000001.1.cds

Sequence Viewer

Length: 468 bp
atggacttgaaagttggcgaggagttgaagaaaagactcagaaagttgctccttgttggacccctacatctagtctggccagtaccatcagcacaatcagatgatggcgaggaagagaaggatatcctaaatcatccgtcgataggggtgtttgttacatatggcggttggaaatcagttttggagagtgtaacttgtggtgtgcctatgattgggaggcctcattttgctgatcaaccgcttgatatgaggagcgtagaagttgtattgaagatcagtatgagagagggtagtgtttttactaaatctggagcaatcaaggtactggaacaagctctatcgcttgagcaagtaaaacaaatgacacacagagttggaatccttaaacaacttgcccaagaggctgttggatccaatgggagttcagctcaagacttgaaagctctggtagagatcatcaaatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

155

Amino Acids

16.97

Weight (kDa)

6.91

Isoelectric Point (pI)

33.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 165, 239
AclWI GGATC 2 cut(s) 405, 418
AcoI YGGCCR 1 cut(s) 77
AfaI GTAC 2 cut(s) 84, 324
AfiI CCNNNNNNNGG 2 cut(s) 143, 212
AgsI TTSAA 4 cut(s) 10, 28, 271, 439
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 3 cut(s) 335, 428, 443
AluI AGCT 3 cut(s) 335, 428, 443
AlwI GGATC 2 cut(s) 405, 418
AoxI GGCC 2 cut(s) 77, 218
AspS9I GGNCC 1 cut(s) 59
AvaII GGWCC 1 cut(s) 59
BalI TGGCCA 1 cut(s) 79
BamHI GGATCC 1 cut(s) 410
BccI CCATC 2 cut(s) 94, 98
BclI TGATCA 1 cut(s) 232
BfaI CTAG 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 59
BmiI GGNNCC 2 cut(s) 61, 412
BplI GAGNNNNNCTC 2 cut(s) 412, 444
BpmI CTGGAG 1 cut(s) 330
BpuEI CTTGAG 2 cut(s) 365, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 212
Bse1I ACTGG 2 cut(s) 80, 330
BseGI GGATG 1 cut(s) 133
BseLI CCNNNNNNNGG 2 cut(s) 143, 212
BseMII CTCAG 1 cut(s) 52
BseNI ACTGG 2 cut(s) 80, 330
BseRI GAGGAG 2 cut(s) 35, 265
BshFI GGCC 2 cut(s) 79, 220
BslI CCNNNNNNNGG 2 cut(s) 143, 212
BsnI GGCC 2 cut(s) 79, 220
Bsp143I GATC 4 cut(s) 232, 273, 410, 453
BspACI CCGC 2 cut(s) 165, 239
BspANI GGCC 2 cut(s) 79, 220
BspCNI CTCAG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 464
BspLI GGNNCC 2 cut(s) 61, 412
BspPI GGATC 2 cut(s) 405, 418
BsrI ACTGG 2 cut(s) 80, 330
BssMI GATC 4 cut(s) 232, 273, 410, 453
Bst6I CTCTTC 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 4 cut(s) 235, 276, 413, 456
BstMBI GATC 4 cut(s) 232, 273, 410, 453
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
BsuRI GGCC 2 cut(s) 79, 220
BtsCI GGATG 1 cut(s) 133
CciI TCATGA 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 59
Csp6I GTAC 2 cut(s) 83, 323
CviAII CATG 1 cut(s) 465
CviJI RGCY 6 cut(s) 79, 220, 335, 404, 428, 443
CviKI_1 RGCY 6 cut(s) 79, 220, 335, 404, 428, 443
CviQI GTAC 2 cut(s) 83, 323
DdeI CTNAG 1 cut(s) 38
DpnI GATC 4 cut(s) 234, 275, 412, 455
DpnII GATC 4 cut(s) 232, 273, 410, 453
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 220
Eco32I GATATC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 59
EcoRV GATATC 1 cut(s) 124
FaeI CATG 1 cut(s) 468
FaiI YATR 6 cut(s) 160, 162, 209, 248, 281, 466
FatI CATG 1 cut(s) 464
FauNDI CATATG 1 cut(s) 160
FbaI TGATCA 1 cut(s) 232
FokI GGATG 1 cut(s) 120
FspBI CTAG 1 cut(s) 71
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 79, 220
Hin1II CATG 1 cut(s) 468
HinfI GANTC 2 cut(s) 36, 378
Hpy188I TCNGA 2 cut(s) 41, 100
Hpy188III TCNNGA 3 cut(s) 309, 431, 465
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 38
Hsp92II CATG 1 cut(s) 468
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 232, 273, 410, 453
LmnI GCTCC 3 cut(s) 54, 252, 311
LpnPI CCDG 5 cut(s) 61, 93, 294, 311, 431
MaeI CTAG 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 154, 190
MalI GATC 4 cut(s) 234, 275, 412, 455
MboI GATC 4 cut(s) 232, 273, 410, 453
MboII GAAGA 3 cut(s) 40, 125, 283
MflI RGATCY 1 cut(s) 410
MlsI TGGCCA 1 cut(s) 79
MluNI TGGCCA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 4 cut(s) 37, 149, 355, 388
MnlI CCTC 7 cut(s) 13, 103, 210, 231, 243, 280, 394
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MseI TTAA 1 cut(s) 384
Msp20I TGGCCA 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeI CATATG 1 cut(s) 160
NdeII GATC 4 cut(s) 232, 273, 410, 453
NlaIII CATG 1 cut(s) 468
NlaIV GGNNCC 2 cut(s) 61, 412
PagI TCATGA 1 cut(s) 464
PceI AGGCCT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 378
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 61, 412
PspPI GGNCC 1 cut(s) 59
PsuI RGATCY 1 cut(s) 410
RsaI GTAC 2 cut(s) 84, 324
RsaNI GTAC 2 cut(s) 83, 323
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 4 cut(s) 232, 273, 410, 453
Sau96I GGNCC 1 cut(s) 59
SchI GAGTC 1 cut(s) 30
SetI ASST 4 cut(s) 324, 337, 430, 445
SinI GGWCC 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 344, 429
SmoI CTYRAG 2 cut(s) 344, 429
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 2 cut(s) 165, 239
SspMI CTAG 1 cut(s) 71
StuI AGGCCT 1 cut(s) 220
TaqI TCGA 1 cut(s) 140
TfiI GAWTC 1 cut(s) 378
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.