RchiOBHm_Chr4g0393271

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000592
Physical Location & Seq
Reverse (-)
8754461 .. 8755815
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36589

Sequence Viewer

Length: 1086 bp
ATGAGCCACAAAGTTGCTAGTACTAGTCCTCAAAATGTTGCAGTCTTAGTTTTTCCATTCACCTCCCATCCCGCCGCTCTTCTTCGATTATTACGTTCCATTTCAACTGTTTGCCCGGATATGCAGTTCACCTTCTTCAACATATCTAGATCAAATAGCTCCCTCTTCTCCGGTTCCGGCAACAAGGGCTGTGCTAATATAAAGCCTTACAACGTATGGGATGGCTTACCAGATGGCTACATACCCCTCTCCGGAAATCCACTACGGGAGCACCTTGAGTTGTTCATTGACAATGCACCTCGGATCTTCGAGAGGGCAATCAAAGAGGTGGAGGCTGAAACAGGACATAAGTTTGGCTGCTTGATTTCGGATGCATTATTCTGGTTTGCTGGAGACATAGCCGAGAAAATGCACGTCGCTTGGGTGACATCATGGATTGGTGAAATACGCTCACTTTTTGTTCATATCGAGACTGATCTAATTAGAGATGAAGTGGGAGCTCCTGGACAAGAAAACAAAACCCTGGAGTTCCTTCCGGGATTCTCAGATGAGTTTCGAGCATCTGACTTAACCAAGGAAATTGTATTTGGAGAAATAGAATCGCCACTTGCAAGAATGTTGCATAAAATGGGACAGAAGCTGCCACAAGCAGCTGCAGTTGTCGTCAACTCTTTCGAAACAATGGATGTGGAAGTTACTGAGGAACTGAAGAAAAGACTCCAAAAGTTGGTCCTTGTTGGTCCACTACATCTTGTCATGCCAGTACAATCAATTGTATCAAATGATGAGGAGGAGAAGGATGGCTGTTTACAGTGGTTGGACAAGCACGAGCCTGCTTCGGTAGCATACGTCAGCTTTGGAACTATGGTGGCACTGCCTCCCATGGAGGTAGCAGCATTAGCTGAAGCATTAGAGGAAGGTGGATTCCCCTTTCTTTGGTCATTTAGGGGAAATCAAGAGGACTTTCCACAAAGATTTATCGAAAGAACCAACGGGTTATCCATAGGAAAAGTAGTTCCATGGGTGAACCAAGAGAAAATCCTCAATCATACCTCGGTAGGAGTGCATGTAACACATTGCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

361

Amino Acids

40.15

Weight (kDa)

5.27

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 117 - 361 1.9e-13 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 727
AccBSI CCGCTC 1 cut(s) 77
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 3 cut(s) 72, 75, 1080
AclWI GGATC 1 cut(s) 311
AcuI CTGAAG 2 cut(s) 728, 924
AfaI GTAC 2 cut(s) 22, 765
AfiI CCNNNNNNNGG 3 cut(s) 251, 727, 936
AgsI TTSAA 2 cut(s) 105, 139
AhlI ACTAGT 1 cut(s) 23
AjiI CACGTC 1 cut(s) 415
AjnI CCWGG 2 cut(s) 502, 522
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AloI GAACNNNNNNTCC 4 cut(s) 110, 142, 999, 1031
AluBI AGCT 6 cut(s) 159, 500, 640, 653, 855, 902
AluI AGCT 6 cut(s) 159, 500, 640, 653, 855, 902
Alw21I GWGCWC 2 cut(s) 273, 502
Alw26I GTCTC 2 cut(s) 387, 464
AlwI GGATC 1 cut(s) 311
AlwNI CAGNNNCTG 1 cut(s) 640
Aor13HI TCCGGA 1 cut(s) 251
ApeKI GCWGC 5 cut(s) 357, 640, 650, 653, 893
AspS9I GGNCC 2 cut(s) 730, 740
AsuC2I CCSGG 2 cut(s) 116, 537
AsuHPI GGTGA 5 cut(s) 52, 121, 436, 452, 1036
AsuII TTCGAA 1 cut(s) 675
AvaII GGWCC 2 cut(s) 730, 740
BanII GRGCYC 1 cut(s) 502
BauI CACGAG 1 cut(s) 827
Bbv12I GWGCWC 2 cut(s) 273, 502
BbvI GCAGC 5 cut(s) 344, 627, 640, 662, 905
BccI CCATC 4 cut(s) 75, 215, 227, 794
BciT130I CCWGG 2 cut(s) 504, 524
BcnI CCSGG 2 cut(s) 116, 537
BcoDI GTCTC 2 cut(s) 387, 464
BcuI ACTAGT 1 cut(s) 23
BfaI CTAG 3 cut(s) 18, 24, 147
BfmI CTRYAG 1 cut(s) 654
BisI GCNGC 6 cut(s) 75, 358, 641, 651, 654, 894
BlsI GCNGC 6 cut(s) 76, 359, 642, 652, 655, 895
BmcAI AGTACT 1 cut(s) 22
Bme1390I CCNGG 4 cut(s) 116, 504, 524, 537
Bme18I GGWCC 2 cut(s) 730, 740
BmgBI CACGTC 1 cut(s) 415
BmgT120I GGNCC 2 cut(s) 730, 740
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 4 cut(s) 116, 504, 524, 537
BmsI GCATC 2 cut(s) 361, 569
BpmI CTGGAG 2 cut(s) 411, 545
Bpu14I TTCGAA 1 cut(s) 675
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 116, 537
BsaJI CCNNGG 6 cut(s) 299, 522, 573, 882, 1019, 1053
BsaWI WCCGGW 2 cut(s) 170, 251
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 727, 936
Bse1I ACTGG 1 cut(s) 761
Bse3DI GCAATG 1 cut(s) 1075
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 2 cut(s) 504, 524
BseDI CCNNGG 6 cut(s) 299, 522, 573, 882, 1019, 1053
BseGI GGATG 5 cut(s) 67, 226, 376, 691, 805
BseLI CCNNNNNNNGG 3 cut(s) 251, 727, 936
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 2 cut(s) 558, 690
BseNI ACTGG 1 cut(s) 761
BseRI GAGGAG 2 cut(s) 803, 806
BseXI GCAGC 5 cut(s) 344, 627, 640, 662, 905
BsiHKAI GWGCWC 2 cut(s) 273, 502
BsiSI CCGG 5 cut(s) 116, 171, 177, 252, 536
BslFI GGGAC 1 cut(s) 645
BslI CCNNNNNNNGG 3 cut(s) 251, 727, 936
BsmAI GTCTC 2 cut(s) 387, 464
BsmFI GGGAC 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 675
Bsp1286I GDGCHC 2 cut(s) 273, 502
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 3 cut(s) 149, 303, 475
Bsp19I CCATGG 2 cut(s) 882, 1019
BspACI CCGC 3 cut(s) 72, 75, 1080
BspCNI CTCAG 2 cut(s) 557, 691
BspEI TCCGGA 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 675
BsrBI CCGCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 1075
BsrI ACTGG 1 cut(s) 761
BssECI CCNNGG 6 cut(s) 299, 522, 573, 882, 1019, 1053
BssMI GATC 3 cut(s) 149, 303, 475
BssSI CACGAG 1 cut(s) 827
BssT1I CCWWGG 3 cut(s) 573, 882, 1019
Bst2BI CACGAG 1 cut(s) 827
Bst2UI CCWGG 2 cut(s) 504, 524
Bst4CI ACNGT 2 cut(s) 109, 813
Bst6I CTCTTC 2 cut(s) 84, 170
BstBI TTCGAA 1 cut(s) 675
BstC8I GCNNGC 1 cut(s) 834
BstDEI CTNAG 3 cut(s) 46, 544, 699
BstDSI CCRYGG 2 cut(s) 882, 1019
BstF5I GGATG 5 cut(s) 67, 226, 376, 691, 805
BstKTI GATC 3 cut(s) 152, 306, 478
BstMAI GTCTC 2 cut(s) 387, 464
BstMBI GATC 3 cut(s) 149, 303, 475
BstMWI GCNNNNNNNGC 3 cut(s) 186, 842, 899
BstNI CCWGG 2 cut(s) 504, 524
BstNSI RCATGY 1 cut(s) 1070
BstSCI CCNGG 4 cut(s) 114, 502, 522, 535
BstSFI CTRYAG 1 cut(s) 654
BstV1I GCAGC 5 cut(s) 344, 627, 640, 662, 905
BstX2I RGATCY 1 cut(s) 303
BstYI RGATCY 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 882, 1019
BtrI CACGTC 1 cut(s) 415
BtsCI GGATG 5 cut(s) 67, 226, 376, 691, 805
BtsI GCAGTG 1 cut(s) 872
BtsIMutI CAGTG 2 cut(s) 818, 872
Cac8I GCNNGC 1 cut(s) 834
CaiI CAGNNNCTG 1 cut(s) 640
Cfr13I GGNCC 2 cut(s) 730, 740
Csp6I GTAC 2 cut(s) 21, 764
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 5 cut(s) 432, 757, 883, 1020, 1067
CviQI GTAC 2 cut(s) 21, 764
DdeI CTNAG 3 cut(s) 46, 544, 699
DpnI GATC 3 cut(s) 151, 305, 477
DpnII GATC 3 cut(s) 149, 303, 475
Eam1104I CTCTTC 2 cut(s) 84, 170
EarI CTCTTC 2 cut(s) 84, 170
Ecl136II GAGCTC 1 cut(s) 500
Eco130I CCWWGG 3 cut(s) 573, 882, 1019
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 2 cut(s) 730, 740
Eco53kI GAGCTC 1 cut(s) 500
Eco57I CTGAAG 2 cut(s) 728, 924
EcoICRI GAGCTC 1 cut(s) 500
EcoRII CCWGG 2 cut(s) 502, 522
EcoT14I CCWWGG 3 cut(s) 573, 882, 1019
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 3 cut(s) 573, 882, 1019
FaeI CATG 5 cut(s) 435, 760, 886, 1023, 1070
FaqI GGGAC 1 cut(s) 645
FatI CATG 5 cut(s) 431, 756, 882, 1019, 1066
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 6 cut(s) 75, 358, 641, 651, 654, 894
FokI GGATG 5 cut(s) 54, 233, 383, 698, 812
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 6 cut(s) 75, 358, 641, 651, 654, 894
FspBI CTAG 3 cut(s) 18, 24, 147
GluI GCNGC 6 cut(s) 75, 358, 641, 651, 654, 894
GsuI CTGGAG 2 cut(s) 411, 545
HapII CCGG 5 cut(s) 116, 171, 177, 252, 536
Hin1II CATG 5 cut(s) 435, 760, 886, 1023, 1070
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HinfI GANTC 4 cut(s) 540, 599, 717, 924
HpaII CCGG 5 cut(s) 116, 171, 177, 252, 536
HphI GGTGA 5 cut(s) 52, 121, 436, 452, 1036
Hpy166II GTNNAC 5 cut(s) 129, 667, 743, 809, 1027
Hpy188I TCNGA 4 cut(s) 303, 370, 547, 565
Hpy188III TCNNGA 5 cut(s) 147, 252, 310, 469, 956
Hpy8I GTNNAC 5 cut(s) 129, 667, 743, 809, 1027
Hpy99I CGWCG 1 cut(s) 419
HpyAV CCTTC 4 cut(s) 142, 542, 790, 911
HpyCH4III ACNGT 2 cut(s) 109, 813
HpyCH4IV ACGT 4 cut(s) 94, 213, 414, 849
HpyCH4V TGCA 9 cut(s) 41, 124, 296, 374, 412, 611, 622, 656, 1066
HpyF10VI GCNNNNNNNGC 3 cut(s) 186, 842, 899
HpyF3I CTNAG 3 cut(s) 46, 544, 699
HpySE526I ACGT 4 cut(s) 94, 213, 414, 849
Hsp92II CATG 5 cut(s) 435, 760, 886, 1023, 1070
Kpn2I TCCGGA 1 cut(s) 251
Kzo9I GATC 3 cut(s) 149, 303, 475
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 4 cut(s) 164, 268, 497, 505
Lsp1109I GCAGC 5 cut(s) 344, 627, 640, 662, 905
LweI GCATC 2 cut(s) 361, 569
MaeI CTAG 3 cut(s) 18, 24, 147
MaeII ACGT 4 cut(s) 94, 213, 414, 849
MaeIII GTNAC 3 cut(s) 424, 694, 1069
MalI GATC 3 cut(s) 151, 305, 477
MbiI CCGCTC 1 cut(s) 77
MboI GATC 3 cut(s) 149, 303, 475
MboII GAAGA 6 cut(s) 71, 74, 127, 157, 298, 721
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 273, 502
MluCI AATT 3 cut(s) 480, 579, 771
MlyI GAGTC 1 cut(s) 711
MmeI TCCRAC 1 cut(s) 798
Mph1103I ATGCAT 1 cut(s) 376
MroI TCCGGA 1 cut(s) 251
MseI TTAA 1 cut(s) 569
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 5 cut(s) 116, 171, 177, 252, 536
MspR9I CCNGG 4 cut(s) 116, 504, 524, 537
MunI CAATTG 1 cut(s) 771
MvaI CCWGG 2 cut(s) 504, 524
MwoI GCNNNNNNNGC 3 cut(s) 186, 842, 899
NciI CCSGG 2 cut(s) 116, 537
NcoI CCATGG 2 cut(s) 882, 1019
NdeII GATC 3 cut(s) 149, 303, 475
NlaIII CATG 5 cut(s) 435, 760, 886, 1023, 1070
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 1 cut(s) 424
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 1070
NspV TTCGAA 1 cut(s) 675
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PfeI GAWTC 3 cut(s) 540, 599, 924
PflMI CCANNNNNTGG 1 cut(s) 727
PfoI TCCNGGA 2 cut(s) 502, 535
PkrI GCNGC 6 cut(s) 76, 359, 642, 652, 655, 895
PleI GAGTC 1 cut(s) 711
PpsI GAGTC 1 cut(s) 711
Psp124BI GAGCTC 1 cut(s) 502
Psp6I CCWGG 2 cut(s) 502, 522
PspGI CCWGG 2 cut(s) 502, 522
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 730, 740
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 640
PsuI RGATCY 1 cut(s) 303
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 2 cut(s) 22, 765
RsaNI GTAC 2 cut(s) 21, 764
SacI GAGCTC 1 cut(s) 502
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 569
SatI GCNGC 6 cut(s) 75, 358, 641, 651, 654, 894
Sau3AI GATC 3 cut(s) 149, 303, 475
Sau96I GGNCC 2 cut(s) 730, 740
ScaI AGTACT 1 cut(s) 22
SchI GAGTC 1 cut(s) 711
ScrFI CCNGG 4 cut(s) 116, 504, 524, 537
SduI GDGCHC 2 cut(s) 273, 502
SfaNI GCATC 2 cut(s) 361, 569
SfcI CTRYAG 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 675
SinI GGWCC 2 cut(s) 730, 740
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 23
Sse9I AATT 3 cut(s) 480, 579, 771
SsiI CCGC 3 cut(s) 72, 75, 1080
SspMI CTAG 3 cut(s) 18, 24, 147
SstI GAGCTC 1 cut(s) 502
StyD4I CCNGG 4 cut(s) 114, 502, 522, 535
StyI CCWWGG 3 cut(s) 573, 882, 1019
TaaI ACNGT 2 cut(s) 109, 813
TaiI ACGT 4 cut(s) 97, 216, 417, 852
TaqI TCGA 6 cut(s) 85, 309, 468, 556, 675, 981
TasI AATT 3 cut(s) 480, 579, 771
TatI WGTACW 2 cut(s) 20, 763
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 3 cut(s) 540, 599, 924
Tru1I TTAA 1 cut(s) 569
Tru9I TTAA 1 cut(s) 569
TscAI CASTG 2 cut(s) 818, 879
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 5 cut(s) 357, 640, 650, 653, 893
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 3 cut(s) 274, 452, 504
TspRI CASTG 2 cut(s) 818, 879
Van91I CCANNNNNTGG 1 cut(s) 727
VpaK11BI GGWCC 2 cut(s) 730, 740
XbaI TCTAGA 1 cut(s) 146
XceI RCATGY 1 cut(s) 1070
XspI CTAG 3 cut(s) 18, 24, 147
ZrmI AGTACT 1 cut(s) 22
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.