Rw7G029290

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000592
Physical Location & Seq
Reverse (-)
40493242 .. 40494723
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029290.1

Sequence Viewer

Length: 1377 bp
ATGAGCCACAAACTTGCTAGTTCTAATCCTCAAGCCCCTGTGGCAGTTTTAAATTTTCCATTCGCGTCCCATCCCAGCTCTCTTCTCCGATTCATACGTACCATTTCGGCAGTGGCCCCGGACATAAAGTTCACCTTCTTCAGCACTTCTATAACAAATAGCTCCCTCTTCTCGGGTTCCAACACAAAGGGCTTGGATAATATAAAGCCTTACAATGTATGGGATGGCTTGCCAGAGGGCTACGTGCCCCCCTCTGGACCTCCGCTGGTGCAAATTGGCATGTTCCTTGACAAGGCACCTCAAAGCTTCGAGAGAGCACTCAAAGAAGTGGAGGCTGAAACAGGACACAAGTTTGGCTGCTTGATTTCAGATGCATTTCTCTGGTTTTCAGGGGACATTGCCGAGAGAATGAACGTCCCTTGGGTGAGTACATGGAGTGGACCACGCCCGCTGCTTGTTCATCTGGAGACTGATATGATTAGAGAAAAAGTGGGAGCTCCTGGGCAAGAAGACAAGACCCTGGACTTCCTTCCAGGATTTTCAAATGAGTTCCAAGCATCTGACTTACCAAAGGAAGTTGTATTTGGAAACATAGAGTCGCCACTTGCAAATATGTTGCATAAAATGGGACAGAAGCTGCCACAAGCAACTGCGGTTGCTGTCAACTCTTTTGAAACAATGGACTTGAAAGTTGCCGAGGAGCTGAAGAAAAGACTCAAGAAGTTGCTACTTGTTGGACCGCTACATCTAGTCCGGGTGGTACCATCAGCACAATCAAATGATGATGAGGAGGAGAAGGATGTATGCTTATCGTGGCTGGACAACTATAAGCCCGCATCAGTAGCATACATCAGCTTTGGAAGTGTGGGGGCACTGCCCCCAATAGAGGTAGCAACATTAGCCGAGGCATTAGAGGAAGGGGGGTTCCCATTTCTTTGGTCATTTAGGGGAAACCTAGAGGACTTTCCCGAAGGATTTTTTGAAAGAATATCTACTGGAAAAGTTGTTCCCTGGGTGAACCAAGTGCAAATCCTAAACCATCCGTCAATTGGGGTGTTTGTTACACATGGCGGTTGGAAATCAGTTTTGGAGAGTGTAACTTGTGGTGTGCCTATGATTGGGAGGCCTCATTTTGCTGATCAAACGCTGAATATGCGGAGCATAGAAGTTGTATGGAAGATCGGTATGAGAATTGAGGGTGGCGTTTTCACTAAATCTGGAGCAATCAAGGTATTGGAACAGGCTCTATCGCTTGAGCAAGGAAAAGAAATGAGACACAGAGTTGGAGTCCTTAAACAGCTTGCTCAAGAGGCTGTTGGACCCAATGGGAGTTCAGCTCAAGACTTGAAAGCTCTGGTGGAGATCATCAAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00942 ko01100 ko01110 map00942 map01100 map01110
Pfam Domains
Protein Families
UDPGT

Protein Analysis

458

Amino Acids

50.21

Weight (kDa)

5.77

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 116 - 419 1.2e-28 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000592)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04190 FvH4_2g02610 FvH4_3g13000 FvH4_4g03650 FvH4_4g03660 FvH4_4g09980
malus_domestica MD00G1134400.v1.1 MD16G1266400.v1.1 MD16G1266500.v1.1
prunus_persica Prupe.1G090400_v2.0.a1 Prupe.1G090500_v2.0.a1 Prupe.1G091000_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091100_v2.0.a1 Prupe.1G091200_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0393031 RchiOBHm_Chr4g0393051 RchiOBHm_Chr4g0393101 RchiOBHm_Chr4g0393121 RchiOBHm_Chr4g0393161 RchiOBHm_Chr4g0393201 RchiOBHm_Chr4g0393261 RchiOBHm_Chr4g0393271 RchiOBHm_Chr4g0403471
rosa_laevigata RLG00000002145 RLG00000008974 RLG00000009768 RLG00000009772
rosa_multiflora Rmu_co8079702.1_g000001 Rmu_co8169716.1_g000001 Rmu_co8283697.1_g000001 Rmu_co8424409.1_g000001 Rmu_co8489763.1_g000001 Rmu_co8489763.1_g000002 Rmu_sc0001590.1_g000014 Rmu_sc0004325.1_g000016 Rmu_sc0004828.1_g000004 Rmu_sc0004828.1_g000005 Rmu_sc0004828.1_g000007 Rmu_sc0007727.1_g000018 Rmu_sc0008186.1_g000005 Rmu_sc0008339.1_g000004 Rmu_sc0008339.1_g000008 Rmu_sc0009057.1_g000008 Rmu_sc0017178.1_g000006
rosa_roxburghii Rroxscaffold_5G00338130 Rroxscaffold_5G00338210 Rroxscaffold_5G00348140
rosa_rugosa Rorug04G0002000 Rorug04G0002100 Rorug04G0002100 Rorug04G0002200 Rorug04G0002300 Rorug04G0002400 Rorug04G0002500 Rorug04G0002600 Rorug04G0043500
rosa_samantha Rh4AG045600 Rh4AG045700 Rh4AG046000 Rh4AG046100 Rh4AG046200 Rh4AG046300 Rh4AG119100 Rh4BG041500 Rh4BG041700 Rh4BG041900 Rh4BG042000 Rh4BG112000 Rh4DG043000 Rh4DG043400 Rh4DG043500 Rh4DG043600 Rh4DG043700 Rh4DG111700 Rh7DG343500
rosa_wichuraiana Rw4G003590 Rw4G003620 Rw4G003660 Rw4G009660 Rw7G029290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 760
AccB1I GGYRCC 2 cut(s) 295, 760
AccII CGCG 1 cut(s) 65
AciI CCGC 7 cut(s) 263, 449, 653, 740, 834, 1071, 1156
AcsI RAATTY 1 cut(s) 52
AcuI CTGAAG 2 cut(s) 124, 725
AfaI GTAC 3 cut(s) 100, 430, 762
AfiI CCNNNNNNNGG 6 cut(s) 172, 254, 292, 886, 1049, 1118
AgsI TTSAA 5 cut(s) 543, 674, 688, 983, 1348
AjnI CCWGG 4 cut(s) 499, 519, 532, 1010
AjuI GAANNNNNNNTTGG 4 cut(s) 567, 599, 1070, 1102
AloI GAACNNNNNNTCC 6 cut(s) 113, 145, 908, 940, 990, 1022
Alw21I GWGCWC 2 cut(s) 319, 499
Alw26I GTCTC 2 cut(s) 461, 1267
AlwNI CAGNNNCTG 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 172
AoxI GGCC 2 cut(s) 114, 1124
ApeKI GCWGC 3 cut(s) 357, 451, 637
ApoI RAATTY 1 cut(s) 52
Asp718I GGTACC 1 cut(s) 760
AspS9I GGNCC 5 cut(s) 115, 257, 440, 737, 1319
AsuC2I CCSGG 2 cut(s) 119, 755
AsuHPI GGTGA 3 cut(s) 124, 436, 1027
AvaI CYCGRG 1 cut(s) 172
AvaII GGWCC 4 cut(s) 257, 440, 737, 1319
BaeGI GKGCMC 2 cut(s) 249, 874
BanI GGYRCC 2 cut(s) 295, 760
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 319, 499
BbvI GCAGC 3 cut(s) 344, 438, 624
BccI CCATC 4 cut(s) 78, 218, 772, 1047
BciT130I CCWGG 4 cut(s) 501, 521, 534, 1012
BclI TGATCA 1 cut(s) 1138
BcnI CCSGG 2 cut(s) 119, 755
BcoDI GTCTC 2 cut(s) 461, 1267
BfaI CTAG 3 cut(s) 18, 749, 956
BglI GCCNNNNNGGC 1 cut(s) 41
BisI GCNGC 3 cut(s) 358, 452, 638
BlsI GCNGC 3 cut(s) 359, 453, 639
Bme1390I CCNGG 6 cut(s) 119, 501, 521, 534, 755, 1012
Bme18I GGWCC 4 cut(s) 257, 440, 737, 1319
BmeT110I CYCGRG 1 cut(s) 172
BmgT120I GGNCC 5 cut(s) 115, 257, 440, 737, 1319
BmiI GGNNCC 6 cut(s) 117, 178, 297, 762, 926, 1321
BmrFI CCNGG 6 cut(s) 119, 501, 521, 534, 755, 1012
BmsI GCATC 3 cut(s) 361, 566, 845
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 1321, 1353
BpmI CTGGAG 2 cut(s) 485, 1239
BpuEI CTTGAG 5 cut(s) 15, 701, 1274, 1290, 1323
BpuMI CCSGG 2 cut(s) 119, 755
BsaAI YACGTR 2 cut(s) 98, 244
BsaJI CCNNGG 8 cut(s) 117, 419, 500, 519, 696, 903, 1010, 1011
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 254, 292, 886, 1049, 1118
Bse1I ACTGG 1 cut(s) 1000
Bse3DI GCAATG 1 cut(s) 396
BseBI CCWGG 4 cut(s) 501, 521, 534, 1012
BseDI CCNNGG 8 cut(s) 117, 419, 500, 519, 696, 903, 1010, 1011
BseGI GGATG 4 cut(s) 70, 229, 805, 1039
BseLI CCNNNNNNNGG 6 cut(s) 172, 254, 292, 886, 1049, 1118
BseMI GCAATG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 1000
BseRI GAGGAG 3 cut(s) 713, 803, 806
BseSI GKGCMC 2 cut(s) 249, 874
BseXI GCAGC 3 cut(s) 344, 438, 624
BseYI CCCAGC 1 cut(s) 74
Bsh1236I CGCG 1 cut(s) 65
BshFI GGCC 2 cut(s) 116, 1126
BshNI GGYRCC 2 cut(s) 295, 760
BsiHKAI GWGCWC 2 cut(s) 319, 499
BsiHKCI CYCGRG 1 cut(s) 172
BsiSI CCGG 2 cut(s) 119, 754
BslFI GGGAC 4 cut(s) 52, 401, 407, 642
BslI CCNNNNNNNGG 6 cut(s) 172, 254, 292, 886, 1049, 1118
BsmAI GTCTC 2 cut(s) 461, 1267
BsmFI GGGAC 4 cut(s) 52, 401, 407, 642
BsnI GGCC 2 cut(s) 116, 1126
BsoBI CYCGRG 1 cut(s) 172
Bsp1286I GDGCHC 4 cut(s) 249, 319, 499, 874
Bsp143I GATC 3 cut(s) 1138, 1179, 1362
BspACI CCGC 7 cut(s) 263, 449, 653, 740, 834, 1071, 1156
BspANI GGCC 2 cut(s) 116, 1126
BspFNI CGCG 1 cut(s) 65
BspHI TCATGA 1 cut(s) 1373
BspLI GGNNCC 6 cut(s) 117, 178, 297, 762, 926, 1321
BspT107I GGYRCC 2 cut(s) 295, 760
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 1 cut(s) 1000
BssECI CCNNGG 8 cut(s) 117, 419, 500, 519, 696, 903, 1010, 1011
BssMI GATC 3 cut(s) 1138, 1179, 1362
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 4 cut(s) 501, 521, 534, 1012
Bst6I CTCTTC 2 cut(s) 87, 173
BstBAI YACGTR 2 cut(s) 98, 244
BstC8I GCNNGC 4 cut(s) 230, 449, 834, 1302
BstENI CCTNNNNNAGG 1 cut(s) 290
BstF5I GGATG 4 cut(s) 70, 229, 805, 1039
BstFNI CGCG 1 cut(s) 65
BstKTI GATC 3 cut(s) 1141, 1182, 1365
BstMAI GTCTC 2 cut(s) 461, 1267
BstMBI GATC 3 cut(s) 1138, 1179, 1362
BstMWI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1153, 1310
BstNI CCWGG 4 cut(s) 501, 521, 534, 1012
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 6 cut(s) 117, 499, 519, 532, 753, 1010
BstSLI GKGCMC 2 cut(s) 249, 874
BstSNI TACGTA 1 cut(s) 98
BstUI CGCG 1 cut(s) 65
BstV1I GCAGC 3 cut(s) 344, 438, 624
BstV2I GAAGAC 1 cut(s) 516
BstXI CCANNNNNNTGG 1 cut(s) 936
BsuRI GGCC 2 cut(s) 116, 1126
BtsCI GGATG 4 cut(s) 70, 229, 805, 1039
BtsI GCAGTG 2 cut(s) 117, 872
BtsIMutI CAGTG 2 cut(s) 117, 872
Cac8I GCNNGC 4 cut(s) 230, 449, 834, 1302
CaiI CAGNNNCTG 1 cut(s) 637
CciI TCATGA 1 cut(s) 1373
Cfr13I GGNCC 5 cut(s) 115, 257, 440, 737, 1319
CseI GACGC 1 cut(s) 54
Csp6I GTAC 3 cut(s) 99, 429, 761
CviAII CATG 4 cut(s) 280, 432, 1067, 1374
CviQI GTAC 3 cut(s) 99, 429, 761
DpnI GATC 3 cut(s) 1140, 1181, 1364
DpnII GATC 3 cut(s) 1138, 1179, 1362
DraI TTTAAA 1 cut(s) 51
Eam1104I CTCTTC 2 cut(s) 87, 173
EarI CTCTTC 2 cut(s) 87, 173
Ecl136II GAGCTC 1 cut(s) 497
Eco105I TACGTA 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 419
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 4 cut(s) 257, 440, 737, 1319
Eco53kI GAGCTC 1 cut(s) 497
Eco57I CTGAAG 2 cut(s) 124, 725
Eco88I CYCGRG 1 cut(s) 172
EcoICRI GAGCTC 1 cut(s) 497
EcoNI CCTNNNNNAGG 1 cut(s) 290
EcoRII CCWGG 4 cut(s) 499, 519, 532, 1010
EcoT14I CCWWGG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 4 cut(s) 283, 435, 1070, 1377
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FaqI GGGAC 4 cut(s) 52, 401, 407, 642
FatI CATG 4 cut(s) 279, 431, 1066, 1373
FauI CCCGC 2 cut(s) 456, 841
FbaI TGATCA 1 cut(s) 1138
Fnu4HI GCNGC 3 cut(s) 358, 452, 638
FokI GGATG 4 cut(s) 57, 236, 812, 1026
FriOI GRGCYC 1 cut(s) 499
Fsp4HI GCNGC 3 cut(s) 358, 452, 638
FspBI CTAG 3 cut(s) 18, 749, 956
GluI GCNGC 3 cut(s) 358, 452, 638
GsaI CCCAGC 1 cut(s) 78
GsuI CTGGAG 2 cut(s) 485, 1239
HaeIII GGCC 2 cut(s) 116, 1126
HapII CCGG 2 cut(s) 119, 754
HgaI GACGC 1 cut(s) 54
Hin1II CATG 4 cut(s) 283, 435, 1070, 1377
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 304
HinfI GANTC 4 cut(s) 90, 596, 714, 1287
HpaII CCGG 2 cut(s) 119, 754
HphI GGTGA 3 cut(s) 124, 436, 1027
Hpy166II GTNNAC 4 cut(s) 132, 440, 664, 1018
Hpy188I TCNGA 3 cut(s) 89, 370, 562
Hpy188III TCNNGA 9 cut(s) 255, 310, 464, 718, 968, 1218, 1307, 1340, 1374
Hpy8I GTNNAC 4 cut(s) 132, 440, 664, 1018
HpyAV CCTTC 5 cut(s) 145, 539, 790, 911, 965
HpyCH4IV ACGT 3 cut(s) 97, 243, 414
HpyCH4V TGCA 5 cut(s) 271, 374, 608, 619, 1027
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1153, 1310
HpySE526I ACGT 3 cut(s) 97, 243, 414
Hsp92II CATG 4 cut(s) 283, 435, 1070, 1377
KpnI GGTACC 1 cut(s) 764
Ksp22I TGATCA 1 cut(s) 1138
Kzo9I GATC 3 cut(s) 1138, 1179, 1362
LmnI GCTCC 6 cut(s) 167, 494, 502, 700, 1158, 1220
Lsp1109I GCAGC 3 cut(s) 344, 438, 624
LweI GCATC 3 cut(s) 361, 566, 845
MaeI CTAG 3 cut(s) 18, 749, 956
MaeII ACGT 3 cut(s) 97, 243, 414
MaeIII GTNAC 2 cut(s) 1060, 1096
MalI GATC 3 cut(s) 1140, 1181, 1364
MboI GATC 3 cut(s) 1138, 1179, 1362
MboII GAAGA 6 cut(s) 74, 130, 160, 521, 718, 1189
MfeI CAATTG 1 cut(s) 1047
MhlI GDGCHC 4 cut(s) 249, 319, 499, 874
MluCI AATT 4 cut(s) 52, 273, 1047, 1191
MlyI GAGTC 3 cut(s) 605, 708, 1296
MmeI TCCRAC 5 cut(s) 204, 715, 1055, 1264, 1297
Mph1103I ATGCAT 1 cut(s) 376
MseI TTAA 2 cut(s) 50, 1293
MspA1I CMGCKG 2 cut(s) 265, 451
MspI CCGG 2 cut(s) 119, 754
MspR9I CCNGG 6 cut(s) 119, 501, 521, 534, 755, 1012
MunI CAATTG 1 cut(s) 1047
MvaI CCWGG 4 cut(s) 501, 521, 534, 1012
MvnI CGCG 1 cut(s) 65
MwoI GCNNNNNNNGC 5 cut(s) 41, 842, 899, 1153, 1310
NciI CCSGG 2 cut(s) 119, 755
NdeII GATC 3 cut(s) 1138, 1179, 1362
NlaIII CATG 4 cut(s) 283, 435, 1070, 1377
NlaIV GGNNCC 6 cut(s) 117, 178, 297, 762, 926, 1321
NmeAIII GCCGAG 3 cut(s) 427, 721, 928
NsiI ATGCAT 1 cut(s) 376
NspI RCATGY 1 cut(s) 283
PagI TCATGA 1 cut(s) 1373
PasI CCCWGGG 1 cut(s) 1011
PceI AGGCCT 1 cut(s) 1126
PfeI GAWTC 1 cut(s) 90
PfoI TCCNGGA 1 cut(s) 532
PkrI GCNGC 3 cut(s) 359, 453, 639
PleI GAGTC 3 cut(s) 604, 708, 1295
PpsI GAGTC 3 cut(s) 604, 708, 1295
Ppu21I YACGTR 2 cut(s) 98, 244
Psp124BI GAGCTC 1 cut(s) 499
Psp6I CCWGG 4 cut(s) 499, 519, 532, 1010
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 4 cut(s) 499, 519, 532, 1010
PspN4I GGNNCC 6 cut(s) 117, 178, 297, 762, 926, 1321
PspPI GGNCC 5 cut(s) 115, 257, 440, 737, 1319
PstNI CAGNNNCTG 1 cut(s) 637
RsaI GTAC 3 cut(s) 100, 430, 762
RsaNI GTAC 3 cut(s) 99, 429, 761
SacI GAGCTC 1 cut(s) 499
SaqAI TTAA 2 cut(s) 50, 1293
SatI GCNGC 3 cut(s) 358, 452, 638
Sau3AI GATC 3 cut(s) 1138, 1179, 1362
Sau96I GGNCC 5 cut(s) 115, 257, 440, 737, 1319
SchI GAGTC 3 cut(s) 605, 708, 1296
ScrFI CCNGG 6 cut(s) 119, 501, 521, 534, 755, 1012
SduI GDGCHC 4 cut(s) 249, 319, 499, 874
SfaNI GCATC 3 cut(s) 361, 566, 845
SinI GGWCC 4 cut(s) 257, 440, 737, 1319
SmlI CTYRAG 5 cut(s) 30, 716, 1253, 1305, 1338
SmoI CTYRAG 5 cut(s) 30, 716, 1253, 1305, 1338
SnaBI TACGTA 1 cut(s) 98
Sse9I AATT 4 cut(s) 52, 273, 1047, 1191
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 7 cut(s) 263, 449, 653, 740, 834, 1071, 1156
SspMI CTAG 3 cut(s) 18, 749, 956
SstI GAGCTC 1 cut(s) 499
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 6 cut(s) 117, 499, 519, 532, 753, 1010
StyI CCWWGG 1 cut(s) 419
TaiI ACGT 3 cut(s) 100, 246, 417
TaqI TCGA 1 cut(s) 309
TasI AATT 4 cut(s) 52, 273, 1047, 1191
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 1 cut(s) 90
Tru1I TTAA 2 cut(s) 50, 1293
Tru9I TTAA 2 cut(s) 50, 1293
TscAI CASTG 2 cut(s) 117, 879
TseI GCWGC 3 cut(s) 357, 451, 637
TspDTI ATGAA 3 cut(s) 82, 425, 449
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 2 cut(s) 117, 879
VpaK11BI GGWCC 4 cut(s) 257, 440, 737, 1319
XagI CCTNNNNNAGG 1 cut(s) 290
XapI RAATTY 1 cut(s) 52
XceI RCATGY 1 cut(s) 283
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 1046
XspI CTAG 3 cut(s) 18, 749, 956
Zsp2I ATGCAT 1 cut(s) 376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.